RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 DZIP3Q86Y13 1208 aaKnown RBP6.12□□□□□ -1.43
HMGB3P17-201ENST00000504195 PGBD3Q8N328 593 aa6.12□□□□□ -1.43
HMGB3P17-201ENST00000504195 A0A1W2PRU2 124 aa6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 NEURL1BA8MQ27 555 aa6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 SPATA31C2B4DYI2 1134 aa6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 HYAL3O43820 417 aaPredicted RBP6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 FGFR3P22607 806 aa6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 LBRQ14739 615 aaKnown RBP6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 PLVAPQ9BX97 442 aa6.11□□□□□ -1.43
HMGB3P17-201ENST00000504195 ARAFP10398 606 aa6.1□□□□□ -1.43
HMGB3P17-201ENST00000504195 GPSM3Q9Y4H4 160 aa6.1□□□□□ -1.43
HMGB3P17-201ENST00000504195 LILRB3O75022 631 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 EFHC2Q5JST6 749 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 BARGINQ6ZT62 677 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 SEPT12Q8IYM1 358 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 ABHD17AQ96GS6 310 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 GRIP2Q9C0E4 1043 aa6.09□□□□□ -1.43
HMGB3P17-201ENST00000504195 A0A1B0GTH6 734 aa6.08□□□□□ -1.44
HMGB3P17-201ENST00000504195 C2CD2LO14523 706 aa6.08□□□□□ -1.44
HMGB3P17-201ENST00000504195 THBS1P07996 1170 aa6.08□□□□□ -1.44
HMGB3P17-201ENST00000504195 TRIM11Q96F44 468 aa6.08□□□□□ -1.44
HMGB3P17-201ENST00000504195 NACC1Q96RE7 527 aa6.08□□□□□ -1.44
HMGB3P17-201ENST00000504195 PPP2R2DQ66LE6 453 aa6.07□□□□□ -1.44
HMGB3P17-201ENST00000504195 LIMD1Q9UGP4 676 aa6.07□□□□□ -1.44
HMGB3P17-201ENST00000504195 ESPNB1AK53 854 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 ADH6P28332 368 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 CTBSQ01459 385 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 CLN3Q13286 438 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 CYP2U1Q7Z449 544 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 PNMA1Q8ND90 353 aa6.06□□□□□ -1.44
HMGB3P17-201ENST00000504195 ZMYND10O75800 440 aa6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 GTF2E1P29083 439 aaPredicted RBP6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 FZD5Q13467 585 aa6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 RTL5Q5HYW3 569 aaPredicted RBP6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 OCSTAMPQ9BR26 566 aa6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 RUBCNLQ9H714 662 aa6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 ARID1BQ8NFD5 2236 aaPredicted RBP6.05□□□□□ -1.44
HMGB3P17-201ENST00000504195 H2AFB1P0C5Y9 115 aa6.04□□□□□ -1.44
HMGB3P17-201ENST00000504195 H2AFB2P0C5Z0 115 aa6.04□□□□□ -1.44
HMGB3P17-201ENST00000504195 ELNP15502 786 aa6.04□□□□□ -1.44
HMGB3P17-201ENST00000504195 PHKA2P46019 1235 aa6.04□□□□□ -1.44
HMGB3P17-201ENST00000504195 KRTAP4-9Q9BYQ8 210 aa6.04□□□□□ -1.44
HMGB3P17-201ENST00000504195 COL17A1Q9UMD9 1497 aaPredicted RBP6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 CTDSPL2Q05D32 466 aa6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 UBAP2LQ14157 1087 aaKnown RBP6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 NR6A1Q15406 480 aa6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 MYSM1Q5VVJ2 828 aa6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 CC2D2BQ6DHV5 1058 aa6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 PARP9Q8IXQ6 854 aa6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 ESF1Q9H501 851 aaKnown RBP6.03□□□□□ -1.44
HMGB3P17-201ENST00000504195 BNIP3LO60238 219 aa6.02□□□□□ -1.45
HMGB3P17-201ENST00000504195 GNASQ5JWF2 1037 aa6.02□□□□□ -1.45
HMGB3P17-201ENST00000504195 FMNL2Q96PY5 1086 aa6.02□□□□□ -1.45
HMGB3P17-201ENST00000504195 ARHGEF10LQ9HCE6 1279 aa6.02□□□□□ -1.45
HMGB3P17-201ENST00000504195 FIGNL1Q6PIW4 674 aa6.01□□□□□ -1.45
HMGB3P17-201ENST00000504195 LRRN4Q8WUT4 740 aa6.01□□□□□ -1.45
HMGB3P17-201ENST00000504195 HAP1P54257 671 aaPredicted RBP6□□□□□ -1.45
HMGB3P17-201ENST00000504195 AVENQ9NQS1 362 aaPredicted RBP6□□□□□ -1.45
HMGB3P17-201ENST00000504195 NDFIP2Q9NV92 336 aa6□□□□□ -1.45
HMGB3P17-201ENST00000504195 CLK2P49760 499 aaKnown RBP5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 ERVK-9P63128 1117 aa5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 TRIM28Q13263 835 aaKnown RBP5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 FCHSD1Q86WN1 690 aa5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 CCDC125Q86Z20 511 aa5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 ZSCAN10Q96SZ4 725 aaPredicted RBP5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 RSPH6AQ9H0K4 717 aa5.99□□□□□ -1.45
HMGB3P17-201ENST00000504195 FAM229AH3BQW9 127 aa5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 ALAS2P22557 587 aa5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 MSX1P28360 303 aa5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 IRAK1P51617 712 aa5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 LAMC2Q13753 1193 aa5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 TMEM214Q6NUQ4 689 aaKnown RBP5.98□□□□□ -1.45
HMGB3P17-201ENST00000504195 TRIM66O15016 1216 aa5.97□□□□□ -1.45
HMGB3P17-201ENST00000504195 RAB6BQ9NRW1 208 aa5.97□□□□□ -1.45
HMGB3P17-201ENST00000504195 PCMTD2Q9NV79 361 aa5.97□□□□□ -1.45
HMGB3P17-201ENST00000504195 C9orf172C9J069 976 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 VSIG10Q8N0Z9 540 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 CNKSR1Q969H4 720 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 AK7Q96M32 723 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 KRTAP4-2Q9BYR5 136 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 CRISPLD1Q9H336 500 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 PRR12Q9ULL5 1215 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 RNF114Q9Y508 228 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 PCDHGC4Q9Y5F7 938 aa5.96□□□□□ -1.46
HMGB3P17-201ENST00000504195 GIGYF1O75420 1035 aaPredicted RBP5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 CENPCQ03188 943 aa5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 RNF20Q5VTR2 975 aa5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 ZC3H15Q8WU90 426 aaKnown RBP5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 TP53INP1Q96A56 240 aa5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 ESYT1Q9BSJ8 1104 aa5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 RNF112Q9ULX5 631 aa5.95□□□□□ -1.46
HMGB3P17-201ENST00000504195 DCDC2BA2VCK2 349 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 CD33P20138 364 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 PCBP4P57723 403 aaKnown RBP5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 GRIK4Q16099 956 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 C4orf17Q53FE4 359 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 FAM182BQ5T319 152 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 KLF15Q9UIH9 416 aa5.94□□□□□ -1.46
HMGB3P17-201ENST00000504195 PCDHB9Q9Y5E1 797 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms