RNA–Protein interactions for RNA: ENST00000503659.5

RNF4-204, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 558 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-204ENST00000503659 ATG3Q9NT62 314 aa24.72■■□□□ 1.55
RNF4-204ENST00000503659 LOC102724428A0A0B4J2F2 783 aa24.71■■□□□ 1.55
RNF4-204ENST00000503659 SIK1P57059 783 aa24.71■■□□□ 1.55
RNF4-204ENST00000503659 COL5A3P25940 1745 aaPredicted RBP24.7■■□□□ 1.54
RNF4-204ENST00000503659 ADAMTS7Q9UKP4 1686 aa24.7■■□□□ 1.54
RNF4-204ENST00000503659 C1orf141Q5JVX7 400 aa24.7■■□□□ 1.54
RNF4-204ENST00000503659 COL23A1Q86Y22 540 aaPredicted RBP24.69■■□□□ 1.54
RNF4-204ENST00000503659 ITPK1Q13572 414 aa24.67■■□□□ 1.54
RNF4-204ENST00000503659 AMIGO3Q86WK7 504 aa24.67■■□□□ 1.54
RNF4-204ENST00000503659 LINC00116Q8NCU8 138 aa24.67■■□□□ 1.54
RNF4-204ENST00000503659 MRC1P22897 1456 aa24.66■■□□□ 1.54
RNF4-204ENST00000503659 MSH5O43196 834 aa24.66■■□□□ 1.54
RNF4-204ENST00000503659 AKAP4Q5JQC9 854 aa24.65■■□□□ 1.54
RNF4-204ENST00000503659 PPP2R1AP30153 589 aa24.64■■□□□ 1.54
RNF4-204ENST00000503659 CABP4P57796 275 aa24.64■■□□□ 1.54
RNF4-204ENST00000503659 AK7Q96M32 723 aa24.64■■□□□ 1.54
RNF4-204ENST00000503659 SLC4A9Q96Q91 983 aa24.64■■□□□ 1.54
RNF4-204ENST00000503659 CICQ96RK0 1608 aaPredicted RBP24.64■■□□□ 1.53
RNF4-204ENST00000503659 ATP6V1AP38606 617 aa24.63■■□□□ 1.53
RNF4-204ENST00000503659 TJP1Q07157 1748 aa24.63■■□□□ 1.53
RNF4-204ENST00000503659 U2SURPO15042 1029 aaKnown RBP24.62■■□□□ 1.53
RNF4-204ENST00000503659 MTHFSDQ2M296 383 aaKnown RBP24.62■■□□□ 1.53
RNF4-204ENST00000503659 NFATC2IPQ8NCF5 419 aa24.61■■□□□ 1.53
RNF4-204ENST00000503659 SMIM5Q71RC9 77 aa24.6■■□□□ 1.53
RNF4-204ENST00000503659 LGR6Q9HBX8 967 aa24.6■■□□□ 1.53
RNF4-204ENST00000503659 UTRNP46939 3433 aa24.59■■□□□ 1.53
RNF4-204ENST00000503659 SSFA2P28290 1259 aa24.59■■□□□ 1.53
RNF4-204ENST00000503659 KLHL34Q8N239 644 aa24.59■■□□□ 1.53
RNF4-204ENST00000503659 CFAP53Q96M91 514 aa24.59■■□□□ 1.53
RNF4-204ENST00000503659 MYH14Q7Z406 1995 aaKnown RBP24.59■■□□□ 1.53
RNF4-204ENST00000503659 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.58■■□□□ 1.53
RNF4-204ENST00000503659 MSL1Q68DK7 614 aa24.58■■□□□ 1.53
RNF4-204ENST00000503659 RBM42Q9BTD8 480 aaKnown RBP24.58■■□□□ 1.53
RNF4-204ENST00000503659 SIPA1L3O60292 1781 aaPredicted RBP24.57■■□□□ 1.52
RNF4-204ENST00000503659 CHD4Q14839 1912 aa24.57■■□□□ 1.52
RNF4-204ENST00000503659 RNMTO43148 476 aaKnown RBP24.57■■□□□ 1.52
RNF4-204ENST00000503659 PHF14O94880 888 aa24.57■■□□□ 1.52
RNF4-204ENST00000503659 SLC52A2Q9HAB3 445 aa24.57■■□□□ 1.52
RNF4-204ENST00000503659 GPR162Q16538 588 aa24.56■■□□□ 1.52
RNF4-204ENST00000503659 UBR2Q8IWV8 1755 aa24.56■■□□□ 1.52
RNF4-204ENST00000503659 GNPATO15228 680 aa24.55■■□□□ 1.52
RNF4-204ENST00000503659 C4AP0C0L4 1744 aa24.55■■□□□ 1.52
RNF4-204ENST00000503659 RSPH6AQ9H0K4 717 aa24.54■■□□□ 1.52
RNF4-204ENST00000503659 CD2APQ9Y5K6 639 aa24.54■■□□□ 1.52
RNF4-204ENST00000503659 KCPQ6ZWJ8 1503 aa24.54■■□□□ 1.52
RNF4-204ENST00000503659 PTCD1O75127 700 aaKnown RBP24.53■■□□□ 1.52
RNF4-204ENST00000503659 NLGN2Q8NFZ4 835 aa24.53■■□□□ 1.52
RNF4-204ENST00000503659 CNTNAP4Q9C0A0 1308 aa24.53■■□□□ 1.52
RNF4-204ENST00000503659 PRKAR2BP31323 418 aa24.51■■□□□ 1.51
RNF4-204ENST00000503659 GAS2L2Q8NHY3 880 aa24.51■■□□□ 1.51
RNF4-204ENST00000503659 PHACTR3Q96KR7 559 aa24.51■■□□□ 1.51
RNF4-204ENST00000503659 RC3H1Q5TC82 1133 aaKnown RBP24.5■■□□□ 1.51
RNF4-204ENST00000503659 NUDCQ9Y266 331 aa24.5■■□□□ 1.51
RNF4-204ENST00000503659 GRIN3BO60391 1043 aa24.48■■□□□ 1.51
RNF4-204ENST00000503659 U2AF1L5P0DN76 240 aaPredicted RBP24.48■■□□□ 1.51
RNF4-204ENST00000503659 U2AF1Q01081 240 aaKnown RBP eCLIP24.48■■□□□ 1.51
RNF4-204ENST00000503659 SLC39A6Q13433 755 aa24.48■■□□□ 1.51
RNF4-204ENST00000503659 GNAT3A8MTJ3 354 aa24.47■■□□□ 1.51
RNF4-204ENST00000503659 ADRA2BP18089 450 aa24.47■■□□□ 1.51
RNF4-204ENST00000503659 ZNF784Q8NCA9 323 aaPredicted RBP24.47■■□□□ 1.51
RNF4-204ENST00000503659 IL17REQ8NFR9 667 aa24.47■■□□□ 1.51
RNF4-204ENST00000503659 RTCBQ9Y3I0 505 aaKnown RBP24.47■■□□□ 1.51
RNF4-204ENST00000503659 GOLGB1Q14789 3259 aaKnown RBP24.46■■□□□ 1.51
RNF4-204ENST00000503659 PELP1Q8IZL8 1130 aaKnown RBP24.46■■□□□ 1.51
RNF4-204ENST00000503659 CEMIPQ8WUJ3 1361 aa24.45■■□□□ 1.5
RNF4-204ENST00000503659 TRAPPC3LQ5T215 181 aa24.45■■□□□ 1.5
RNF4-204ENST00000503659 RPS6KA4O75676 772 aa24.44■■□□□ 1.5
RNF4-204ENST00000503659 CRKLP46109 303 aaKnown RBP24.44■■□□□ 1.5
RNF4-204ENST00000503659 FCHSD2O94868 740 aa24.43■■□□□ 1.5
RNF4-204ENST00000503659 DDX10Q13206 875 aaKnown RBP24.43■■□□□ 1.5
RNF4-204ENST00000503659 DNAJC10Q8IXB1 793 aa24.43■■□□□ 1.5
RNF4-204ENST00000503659 ARHGEF1Q92888 912 aaKnown RBP24.43■■□□□ 1.5
RNF4-204ENST00000503659 DLG5Q8TDM6 1919 aa24.43■■□□□ 1.5
RNF4-204ENST00000503659 KIF13BQ9NQT8 1826 aa24.41■■□□□ 1.5
RNF4-204ENST00000503659 YBX3P16989 372 aaKnown RBP eCLIP24.41■■□□□ 1.5
RNF4-204ENST00000503659 INTS5Q6P9B9 1019 aaKnown RBP24.41■■□□□ 1.5
RNF4-204ENST00000503659 NLGN1Q8N2Q7 840 aa24.41■■□□□ 1.5
RNF4-204ENST00000503659 TEFQ10587 303 aa24.4■■□□□ 1.5
RNF4-204ENST00000503659 CYP19A1P11511 503 aaPredicted RBP24.38■■□□□ 1.49
RNF4-204ENST00000503659 GYS1P13807 737 aa24.38■■□□□ 1.49
RNF4-204ENST00000503659 VSIG10Q8N0Z9 540 aa24.38■■□□□ 1.49
RNF4-204ENST00000503659 KIAA1551Q9HCM1 1747 aa24.38■■□□□ 1.49
RNF4-204ENST00000503659 MMP10P09238 476 aa24.37■■□□□ 1.49
RNF4-204ENST00000503659 RFC4P35249 363 aa24.37■■□□□ 1.49
RNF4-204ENST00000503659 RALBP1Q15311 655 aa24.37■■□□□ 1.49
RNF4-204ENST00000503659 CCDC87Q9NVE4 849 aa24.37■■□□□ 1.49
RNF4-204ENST00000503659 ZNF790Q6PG37 636 aa24.36■■□□□ 1.49
RNF4-204ENST00000503659 SOS1Q07889 1333 aaPredicted RBP24.35■■□□□ 1.49
RNF4-204ENST00000503659 TTC5Q8N0Z6 440 aa24.35■■□□□ 1.49
RNF4-204ENST00000503659 ZNF496Q96IT1 587 aaPredicted RBP24.35■■□□□ 1.49
RNF4-204ENST00000503659 USP42Q9H9J4 1324 aaKnown RBP24.35■■□□□ 1.49
RNF4-204ENST00000503659 HEG1Q9ULI3 1381 aa24.34■■□□□ 1.49
RNF4-204ENST00000503659 MCM10Q7L590 875 aa24.34■■□□□ 1.49
RNF4-204ENST00000503659 PLEKHF1Q96S99 279 aa24.34■■□□□ 1.49
RNF4-204ENST00000503659 SRP68Q9UHB9 627 aaKnown RBP24.34■■□□□ 1.49
RNF4-204ENST00000503659 ZBTB1Q9Y2K1 713 aa24.33■■□□□ 1.49
RNF4-204ENST00000503659 COL15A1P39059 1388 aa24.31■■□□□ 1.48
RNF4-204ENST00000503659 KCNQ3O43525 872 aa24.31■■□□□ 1.48
RNF4-204ENST00000503659 DCTN1Q14203 1278 aa24.31■■□□□ 1.48
RNF4-204ENST00000503659 C10orf71Q711Q0 1435 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms