RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 TGFB2P61812 414 aa21.9■■□□□ 1.1
HDAC6-236ENST00000498808 SLC24A1O60721 1099 aa21.89■■□□□ 1.09
HDAC6-236ENST00000498808 TMOD3Q9NYL9 352 aa21.89■■□□□ 1.09
HDAC6-236ENST00000498808 BRCA1P38398 1863 aaKnown RBP21.89■■□□□ 1.09
HDAC6-236ENST00000498808 SPG7Q9UQ90 795 aa21.88■■□□□ 1.09
HDAC6-236ENST00000498808 ARHGAP27Q6ZUM4 889 aa21.87■■□□□ 1.09
HDAC6-236ENST00000498808 KDRP35968 1356 aa21.87■■□□□ 1.09
HDAC6-236ENST00000498808 ANKRD26Q9UPS8 1709 aa21.86■■□□□ 1.09
HDAC6-236ENST00000498808 HTRA3P83110 453 aa21.86■■□□□ 1.09
HDAC6-236ENST00000498808 ATG3Q9NT62 314 aa21.86■■□□□ 1.09
HDAC6-236ENST00000498808 C4AP0C0L4 1744 aa21.86■■□□□ 1.09
HDAC6-236ENST00000498808 DPEP1P16444 411 aa21.85■■□□□ 1.09
HDAC6-236ENST00000498808 RBM46Q8TBY0 533 aaKnown RBP21.85■■□□□ 1.09
HDAC6-236ENST00000498808 FCHSD2O94868 740 aa21.84■■□□□ 1.09
HDAC6-236ENST00000498808 PHKG2P15735 406 aa21.84■■□□□ 1.09
HDAC6-236ENST00000498808 NLGN1Q8N2Q7 840 aa21.84■■□□□ 1.09
HDAC6-236ENST00000498808 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.84■■□□□ 1.092e-6■■■□□ 16
HDAC6-236ENST00000498808 TMF1P82094 1093 aa21.83■■□□□ 1.09
HDAC6-236ENST00000498808 TRAPPC3LQ5T215 181 aa21.83■■□□□ 1.09
HDAC6-236ENST00000498808 COL13A1Q5TAT6 717 aaPredicted RBP21.83■■□□□ 1.09
HDAC6-236ENST00000498808 KLRG1Q96E93 195 aa21.83■■□□□ 1.09
HDAC6-236ENST00000498808 SLC4A9Q96Q91 983 aa21.83■■□□□ 1.09
HDAC6-236ENST00000498808 EYA1Q99502 592 aa21.83■■□□□ 1.09
HDAC6-236ENST00000498808 RTCBQ9Y3I0 505 aaKnown RBP21.83■■□□□ 1.09
HDAC6-236ENST00000498808 ARFGEF1Q9Y6D6 1849 aa21.83■■□□□ 1.08
HDAC6-236ENST00000498808 C9orf131Q5VYM1 1079 aa21.82■■□□□ 1.08
HDAC6-236ENST00000498808 IFNL2Q8IZJ0 200 aa21.82■■□□□ 1.08
HDAC6-236ENST00000498808 JMYQ8N9B5 988 aa21.82■■□□□ 1.08
HDAC6-236ENST00000498808 ARHGEF1Q92888 912 aaKnown RBP21.82■■□□□ 1.08
HDAC6-236ENST00000498808 CCDC87Q9NVE4 849 aa21.82■■□□□ 1.08
HDAC6-236ENST00000498808 ZNF831Q5JPB2 1677 aa21.82■■□□□ 1.08
HDAC6-236ENST00000498808 COL5A3P25940 1745 aaPredicted RBP21.81■■□□□ 1.08
HDAC6-236ENST00000498808 PPM1GO15355 546 aaPredicted RBP21.81■■□□□ 1.08
HDAC6-236ENST00000498808 GYS1P13807 737 aa21.81■■□□□ 1.08
HDAC6-236ENST00000498808 KCNA3P22001 575 aa21.81■■□□□ 1.08
HDAC6-236ENST00000498808 CARD14Q9BXL6 1004 aa21.81■■□□□ 1.08
HDAC6-236ENST00000498808 PLEKHG2Q9H7P9 1386 aa21.81■■□□□ 1.08
HDAC6-236ENST00000498808 KCPQ6ZWJ8 1503 aa21.8■■□□□ 1.08
HDAC6-236ENST00000498808 WASHC2AQ641Q2 1341 aa21.8■■□□□ 1.08
HDAC6-236ENST00000498808 ADRA2BP18089 450 aa21.78■■□□□ 1.08
HDAC6-236ENST00000498808 FSTL1Q12841 308 aa21.78■■□□□ 1.08
HDAC6-236ENST00000498808 RC3H1Q5TC82 1133 aaKnown RBP21.78■■□□□ 1.08
HDAC6-236ENST00000498808 C16orf71Q8IYS4 520 aaPredicted RBP21.78■■□□□ 1.08
HDAC6-236ENST00000498808 CNTNAP4Q9C0A0 1308 aa21.78■■□□□ 1.08
HDAC6-236ENST00000498808 MYH14Q7Z406 1995 aaKnown RBP21.78■■□□□ 1.08
HDAC6-236ENST00000498808 PARP3Q9Y6F1 533 aa21.77■■□□□ 1.08
HDAC6-236ENST00000498808 RPS6KA4O75676 772 aa21.76■■□□□ 1.07
HDAC6-236ENST00000498808 RBM42Q9BTD8 480 aaKnown RBP21.76■■□□□ 1.07
HDAC6-236ENST00000498808 RFC4P35249 363 aa21.75■■□□□ 1.07
HDAC6-236ENST00000498808 DCAF5Q96JK2 942 aa21.75■■□□□ 1.07
HDAC6-236ENST00000498808 PIM2Q9P1W9 311 aa21.74■■□□□ 1.07
HDAC6-236ENST00000498808 KDM2BQ8NHM5 1336 aa21.74■■□□□ 1.07
HDAC6-236ENST00000498808 TNRC6CQ9HCJ0 1690 aaKnown RBP21.73■■□□□ 1.07
HDAC6-236ENST00000498808 CAPN15O75808 1086 aa21.73■■□□□ 1.07
HDAC6-236ENST00000498808 RNF181Q9P0P0 153 aa21.73■■□□□ 1.07
HDAC6-236ENST00000498808 SBF1O95248 1867 aa21.73■■□□□ 1.07
HDAC6-236ENST00000498808 ERVV-2B6SEH9 535 aa21.72■■□□□ 1.07
HDAC6-236ENST00000498808 RRAGCQ9HB90 399 aa21.72■■□□□ 1.07
HDAC6-236ENST00000498808 POLKQ9UBT6 870 aa21.72■■□□□ 1.07
HDAC6-236ENST00000498808 CDCA8Q53HL2 280 aa21.71■■□□□ 1.07
HDAC6-236ENST00000498808 DALRD3Q5D0E6 543 aaKnown RBP21.71■■□□□ 1.07
HDAC6-236ENST00000498808 PCNTO95613 3336 aa21.7■■□□□ 1.06
HDAC6-236ENST00000498808 DDR1Q08345 913 aa21.7■■□□□ 1.06
HDAC6-236ENST00000498808 EIF4A2Q14240 407 aaKnown RBP21.7■■□□□ 1.06
HDAC6-236ENST00000498808 TNS4Q8IZW8 715 aa21.7■■□□□ 1.06
HDAC6-236ENST00000498808 SRP68Q9UHB9 627 aaKnown RBP21.7■■□□□ 1.06
HDAC6-236ENST00000498808 KDM6AO15550 1401 aaPredicted RBP21.7■■□□□ 1.06
HDAC6-236ENST00000498808 FKBP8Q14318 412 aa21.69■■□□□ 1.06
HDAC6-236ENST00000498808 CHRNA5P30532 468 aa21.68■■□□□ 1.06
HDAC6-236ENST00000498808 USP42Q9H9J4 1324 aaKnown RBP21.67■■□□□ 1.06
HDAC6-236ENST00000498808 SMC1BQ8NDV3 1235 aa21.67■■□□□ 1.06
HDAC6-236ENST00000498808 HSP90AB1P08238 724 aaKnown RBP21.66■■□□□ 1.06
HDAC6-236ENST00000498808 CRKLP46109 303 aaKnown RBP21.66■■□□□ 1.06
HDAC6-236ENST00000498808 PRELPP51888 382 aa21.66■■□□□ 1.06
HDAC6-236ENST00000498808 TJP1Q07157 1748 aa21.66■■□□□ 1.06
HDAC6-236ENST00000498808 ADAMTS7Q9UKP4 1686 aa21.66■■□□□ 1.06
HDAC6-236ENST00000498808 PTCD1O75127 700 aaKnown RBP21.64■■□□□ 1.05
HDAC6-236ENST00000498808 CABP4P57796 275 aa21.64■■□□□ 1.05
HDAC6-236ENST00000498808 POLRMTO00411 1230 aaKnown RBP21.63■■□□□ 1.05
HDAC6-236ENST00000498808 RASSF7Q02833 373 aa21.63■■□□□ 1.05
HDAC6-236ENST00000498808 ZNF530Q6P9A1 599 aaPredicted RBP21.62■■□□□ 1.05
HDAC6-236ENST00000498808 ZC3H4Q9UPT8 1303 aaKnown RBP21.61■■□□□ 1.05
HDAC6-236ENST00000498808 HSPA1AP0DMV8 641 aaKnown RBP21.61■■□□□ 1.05
HDAC6-236ENST00000498808 HSPA1BP0DMV9 641 aaKnown RBP21.61■■□□□ 1.05
HDAC6-236ENST00000498808 TM4SF1P30408 202 aa21.61■■□□□ 1.05
HDAC6-236ENST00000498808 TNNT2P45379 298 aaPredicted RBP21.61■■□□□ 1.05
HDAC6-236ENST00000498808 PLEKHO1Q53GL0 409 aaPredicted RBP21.61■■□□□ 1.05
HDAC6-236ENST00000498808 INTS5Q6P9B9 1019 aaKnown RBP21.59■■□□□ 1.05
HDAC6-236ENST00000498808 AFDNP55196 1824 aaKnown RBP21.58■■□□□ 1.05
HDAC6-236ENST00000498808 MTHFSP49914 203 aa21.58■■□□□ 1.05
HDAC6-236ENST00000498808 AMOTQ4VCS5 1084 aa21.58■■□□□ 1.05
HDAC6-236ENST00000498808 NFATC2IPQ8NCF5 419 aa21.58■■□□□ 1.05
HDAC6-236ENST00000498808 DLEC1Q9Y238 1755 aa21.57■■□□□ 1.04
HDAC6-236ENST00000498808 GLTPD2A6NH11 291 aa21.57■■□□□ 1.04
HDAC6-236ENST00000498808 TIAM2Q8IVF5 1701 aa21.57■■□□□ 1.04
HDAC6-236ENST00000498808 NRXN2Q9P2S2 1712 aa21.56■■□□□ 1.04
HDAC6-236ENST00000498808 VEGFAP15692 232 aaPredicted RBP21.56■■□□□ 1.04
HDAC6-236ENST00000498808 LMNB1P20700 586 aa21.56■■□□□ 1.04
HDAC6-236ENST00000498808 USPL1Q5W0Q7 1092 aa21.56■■□□□ 1.04
HDAC6-236ENST00000498808 AEBP1Q8IUX7 1158 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms