RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RBM46Q8TBY0 533 aaKnown RBP23.17■■□□□ 1.3
VIM-208ENST00000497849 KLRG1Q96E93 195 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 ASAP1Q9ULH1 1129 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 PCNTO95613 3336 aa23.17■■□□□ 1.3
VIM-208ENST00000497849 ATP6V1AP38606 617 aa23.16■■□□□ 1.3
VIM-208ENST00000497849 JMYQ8N9B5 988 aa23.16■■□□□ 1.3
VIM-208ENST00000497849 KIF20BQ96Q89 1820 aa23.16■■□□□ 1.3
VIM-208ENST00000497849 DPEP1P16444 411 aa23.14■■□□□ 1.29
VIM-208ENST00000497849 TMOD3Q9NYL9 352 aa23.14■■□□□ 1.29
VIM-208ENST00000497849 C4AP0C0L4 1744 aa23.13■■□□□ 1.29
VIM-208ENST00000497849 ARFGEF1Q9Y6D6 1849 aa23.12■■□□□ 1.29
VIM-208ENST00000497849 ATG3Q9NT62 314 aa23.12■■□□□ 1.29
VIM-208ENST00000497849 SPG7Q9UQ90 795 aa23.12■■□□□ 1.29
VIM-208ENST00000497849 EMILIN1Q9Y6C2 1016 aa23.12■■□□□ 1.29
VIM-208ENST00000497849 FCHSD2O94868 740 aa23.11■■□□□ 1.29
VIM-208ENST00000497849 C9orf131Q5VYM1 1079 aa23.11■■□□□ 1.29
VIM-208ENST00000497849 NLGN1Q8N2Q7 840 aa23.11■■□□□ 1.29
VIM-208ENST00000497849 KCNA3P22001 575 aa23.1■■□□□ 1.29
VIM-208ENST00000497849 TMF1P82094 1093 aa23.1■■□□□ 1.29
VIM-208ENST00000497849 TRAPPC3LQ5T215 181 aa23.1■■□□□ 1.29
VIM-208ENST00000497849 KDRP35968 1356 aa23.1■■□□□ 1.29
VIM-208ENST00000497849 CAPN15O75808 1086 aa23.09■■□□□ 1.29
VIM-208ENST00000497849 FSTL1Q12841 308 aa23.09■■□□□ 1.29
VIM-208ENST00000497849 SLC4A9Q96Q91 983 aa23.09■■□□□ 1.29
VIM-208ENST00000497849 RTCBQ9Y3I0 505 aaKnown RBP23.09■■□□□ 1.29
VIM-208ENST00000497849 KCPQ6ZWJ8 1503 aa23.08■■□□□ 1.29
VIM-208ENST00000497849 SLC24A1O60721 1099 aa23.08■■□□□ 1.29
VIM-208ENST00000497849 C16orf71Q8IYS4 520 aaPredicted RBP23.08■■□□□ 1.29
VIM-208ENST00000497849 ARHGEF1Q92888 912 aaKnown RBP23.08■■□□□ 1.29
VIM-208ENST00000497849 CCDC87Q9NVE4 849 aa23.08■■□□□ 1.29
VIM-208ENST00000497849 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.08■■□□□ 1.29
VIM-208ENST00000497849 TONSLQ96HA7 1378 aa23.08■■□□□ 1.29
VIM-208ENST00000497849 PLEKHG2Q9H7P9 1386 aa23.08■■□□□ 1.29
VIM-208ENST00000497849 COL5A3P25940 1745 aaPredicted RBP23.08■■□□□ 1.28
VIM-208ENST00000497849 ZNF831Q5JPB2 1677 aa23.07■■□□□ 1.28
VIM-208ENST00000497849 GYS1P13807 737 aa23.07■■□□□ 1.28
VIM-208ENST00000497849 PHKG2P15735 406 aa23.07■■□□□ 1.28
VIM-208ENST00000497849 ANKRD26Q9UPS8 1709 aa23.07■■□□□ 1.28
VIM-208ENST00000497849 IFNL2Q8IZJ0 200 aa23.05■■□□□ 1.28
VIM-208ENST00000497849 EYA1Q99502 592 aa23.05■■□□□ 1.28
VIM-208ENST00000497849 MYH14Q7Z406 1995 aaKnown RBP23.05■■□□□ 1.28
VIM-208ENST00000497849 ADRA2BP18089 450 aa23.04■■□□□ 1.28
VIM-208ENST00000497849 TNS4Q8IZW8 715 aa23.04■■□□□ 1.28
VIM-208ENST00000497849 SBF1O95248 1867 aa23.04■■□□□ 1.28
VIM-208ENST00000497849 RC3H1Q5TC82 1133 aaKnown RBP23.03■■□□□ 1.28
VIM-208ENST00000497849 DCAF5Q96JK2 942 aa23.03■■□□□ 1.28
VIM-208ENST00000497849 PARP3Q9Y6F1 533 aa23.03■■□□□ 1.28
VIM-208ENST00000497849 KDM2BQ8NHM5 1336 aa23.03■■□□□ 1.28
VIM-208ENST00000497849 TNRC6CQ9HCJ0 1690 aaKnown RBP23.03■■□□□ 1.28
VIM-208ENST00000497849 PPM1GO15355 546 aaPredicted RBP23.02■■□□□ 1.28
VIM-208ENST00000497849 PRELPP51888 382 aa23.02■■□□□ 1.28
VIM-208ENST00000497849 RRAGCQ9HB90 399 aa23.02■■□□□ 1.28
VIM-208ENST00000497849 PIM2Q9P1W9 311 aa23.02■■□□□ 1.28
VIM-208ENST00000497849 WASHC2AQ641Q2 1341 aa23.02■■□□□ 1.28
VIM-208ENST00000497849 RPS6KA4O75676 772 aa23.01■■□□□ 1.27
VIM-208ENST00000497849 RFC4P35249 363 aa23.01■■□□□ 1.27
VIM-208ENST00000497849 CARD14Q9BXL6 1004 aa23.01■■□□□ 1.27
VIM-208ENST00000497849 RNF181Q9P0P0 153 aa23.01■■□□□ 1.27
VIM-208ENST00000497849 CNTNAP4Q9C0A0 1308 aa23.01■■□□□ 1.27
VIM-208ENST00000497849 RBM42Q9BTD8 480 aaKnown RBP23■■□□□ 1.27
VIM-208ENST00000497849 DALRD3Q5D0E6 543 aaKnown RBP22.98■■□□□ 1.27
VIM-208ENST00000497849 SMC1BQ8NDV3 1235 aa22.96■■□□□ 1.27
VIM-208ENST00000497849 ERVV-2B6SEH9 535 aa22.95■■□□□ 1.26
VIM-208ENST00000497849 CHRNA5P30532 468 aa22.95■■□□□ 1.26
VIM-208ENST00000497849 DDR1Q08345 913 aa22.95■■□□□ 1.26
VIM-208ENST00000497849 FKBP8Q14318 412 aa22.94■■□□□ 1.26
VIM-208ENST00000497849 SRP68Q9UHB9 627 aaKnown RBP22.94■■□□□ 1.26
VIM-208ENST00000497849 POLKQ9UBT6 870 aa22.92■■□□□ 1.26
VIM-208ENST00000497849 KDM6AO15550 1401 aaPredicted RBP22.91■■□□□ 1.26
VIM-208ENST00000497849 USP42Q9H9J4 1324 aaKnown RBP22.91■■□□□ 1.26
VIM-208ENST00000497849 HSPA1AP0DMV8 641 aaKnown RBP22.91■■□□□ 1.26
VIM-208ENST00000497849 HSPA1BP0DMV9 641 aaKnown RBP22.91■■□□□ 1.26
VIM-208ENST00000497849 EIF4A2Q14240 407 aaKnown RBP22.91■■□□□ 1.26
VIM-208ENST00000497849 ADAMTS7Q9UKP4 1686 aa22.9■■□□□ 1.26
VIM-208ENST00000497849 TJP1Q07157 1748 aa22.89■■□□□ 1.26
VIM-208ENST00000497849 CRKLP46109 303 aaKnown RBP22.89■■□□□ 1.25
VIM-208ENST00000497849 RASSF7Q02833 373 aa22.89■■□□□ 1.25
VIM-208ENST00000497849 ZC3H4Q9UPT8 1303 aaKnown RBP22.88■■□□□ 1.25
VIM-208ENST00000497849 POLRMTO00411 1230 aaKnown RBP22.88■■□□□ 1.25
VIM-208ENST00000497849 CDCA8Q53HL2 280 aa22.88■■□□□ 1.25
VIM-208ENST00000497849 HSP90AB1P08238 724 aaKnown RBP22.87■■□□□ 1.25
VIM-208ENST00000497849 TM4SF1P30408 202 aa22.87■■□□□ 1.25
VIM-208ENST00000497849 PTCD1O75127 700 aaKnown RBP22.86■■□□□ 1.25
VIM-208ENST00000497849 CABP4P57796 275 aa22.86■■□□□ 1.25
VIM-208ENST00000497849 CCDC88AQ3V6T2 1871 aa22.85■■□□□ 1.25
VIM-208ENST00000497849 GLTPD2A6NH11 291 aa22.85■■□□□ 1.25
VIM-208ENST00000497849 VEGFAP15692 232 aaPredicted RBP22.85■■□□□ 1.25
VIM-208ENST00000497849 AFDNP55196 1824 aaKnown RBP22.85■■□□□ 1.25
VIM-208ENST00000497849 TIAM2Q8IVF5 1701 aa22.83■■□□□ 1.25
VIM-208ENST00000497849 DLEC1Q9Y238 1755 aa22.83■■□□□ 1.24
VIM-208ENST00000497849 LMNB1P20700 586 aa22.82■■□□□ 1.24
VIM-208ENST00000497849 PLEKHO1Q53GL0 409 aaPredicted RBP22.82■■□□□ 1.24
VIM-208ENST00000497849 ZNF530Q6P9A1 599 aaPredicted RBP22.82■■□□□ 1.24
VIM-208ENST00000497849 INTS5Q6P9B9 1019 aaKnown RBP22.82■■□□□ 1.24
VIM-208ENST00000497849 NFATC2IPQ8NCF5 419 aa22.81■■□□□ 1.24
VIM-208ENST00000497849 NRXN2Q9P2S2 1712 aa22.81■■□□□ 1.24
VIM-208ENST00000497849 POTECB2RU33 542 aa22.8■■□□□ 1.24
VIM-208ENST00000497849 USPL1Q5W0Q7 1092 aa22.8■■□□□ 1.24
VIM-208ENST00000497849 TNNT2P45379 298 aaPredicted RBP22.79■■□□□ 1.24
VIM-208ENST00000497849 MTHFSP49914 203 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms