RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 HOXB7P09629 217 aa13.69□□□□□ -0.22
CMSS1-208ENST00000496116 PLEKHO1Q53GL0 409 aaPredicted RBP13.69□□□□□ -0.22
CMSS1-208ENST00000496116 NCOA3Q9Y6Q9 1424 aa13.69□□□□□ -0.22
CMSS1-208ENST00000496116 HSP90AB1P08238 724 aaKnown RBP13.69□□□□□ -0.22
CMSS1-208ENST00000496116 AMOTQ4VCS5 1084 aa13.69□□□□□ -0.22
CMSS1-208ENST00000496116 AKAP4Q5JQC9 854 aa13.69□□□□□ -0.22
CMSS1-208ENST00000496116 MED1Q15648 1581 aaPredicted RBP13.68□□□□□ -0.22
CMSS1-208ENST00000496116 SMARCA5O60264 1052 aaPredicted RBP13.68□□□□□ -0.22
CMSS1-208ENST00000496116 GCP02774 474 aa13.68□□□□□ -0.22
CMSS1-208ENST00000496116 ORAI2Q96SN7 254 aa13.68□□□□□ -0.22
CMSS1-208ENST00000496116 KIF2CQ99661 725 aa13.68□□□□□ -0.22
CMSS1-208ENST00000496116 SLIT3O75094 1523 aa13.68□□□□□ -0.22
CMSS1-208ENST00000496116 LMO7Q8WWI1 1683 aa13.68□□□□□ -0.22
CMSS1-208ENST00000496116 TEFQ10587 303 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 OSBPL3Q9H4L5 887 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 RGPD2P0DJD1 1756 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 SDSP20132 328 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 KCNA4P22459 653 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 ARHGEF25Q86VW2 580 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 OTUD7AQ8TE49 926 aaPredicted RBP13.67□□□□□ -0.22
CMSS1-208ENST00000496116 KDM3BQ7LBC6 1761 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 KIF1AQ12756 1690 aa13.67□□□□□ -0.22
CMSS1-208ENST00000496116 EIF4A1P60842 406 aaKnown RBP13.66□□□□□ -0.22
CMSS1-208ENST00000496116 ATP8B2P98198 1209 aa13.66□□□□□ -0.22
CMSS1-208ENST00000496116 ZNF530Q6P9A1 599 aaPredicted RBP13.66□□□□□ -0.22
CMSS1-208ENST00000496116 CIZ1Q9ULV3 898 aaPredicted RBP13.66□□□□□ -0.22
CMSS1-208ENST00000496116 NCAPD2Q15021 1401 aa13.66□□□□□ -0.22
CMSS1-208ENST00000496116 K7ELQ4 463 aaPredicted RBP13.66□□□□□ -0.22
CMSS1-208ENST00000496116 HSP90AA1P07900 732 aaKnown RBP13.66□□□□□ -0.22
CMSS1-208ENST00000496116 C1orf141Q5JVX7 400 aa13.66□□□□□ -0.22
CMSS1-208ENST00000496116 LMOD2Q6P5Q4 547 aa13.66□□□□□ -0.22
CMSS1-208ENST00000496116 LRRCC1Q9C099 1032 aa13.66□□□□□ -0.22
CMSS1-208ENST00000496116 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
CMSS1-208ENST00000496116 PROSER2Q86WR7 435 aaPredicted RBP13.65□□□□□ -0.22
CMSS1-208ENST00000496116 LRRC59Q96AG4 307 aaKnown RBP13.65□□□□□ -0.22
CMSS1-208ENST00000496116 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
CMSS1-208ENST00000496116 BTBD11A6QL63 1104 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 REC8O95072 547 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 MCM4P33991 863 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 PDE1AP54750 535 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 XPCQ01831 940 aaPredicted RBP13.64□□□□□ -0.23
CMSS1-208ENST00000496116 RABEP1Q15276 862 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 EXOC6BQ9Y2D4 811 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 TRPM3Q9HCF6 1732 aaPredicted RBP13.64□□□□□ -0.23
CMSS1-208ENST00000496116 OVOS2A0A0G2JMS6 1433 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 EIF2S2P20042 333 aaKnown RBP13.64□□□□□ -0.23
CMSS1-208ENST00000496116 KRT28Q7Z3Y7 464 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 ANKRD24Q8TF21 1146 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 USP26Q9BXU7 913 aa13.64□□□□□ -0.23
CMSS1-208ENST00000496116 PHAXQ9H814 394 aaKnown RBP13.64□□□□□ -0.23
CMSS1-208ENST00000496116 LRRFIP2Q9Y608 721 aaKnown RBP13.64□□□□□ -0.23
CMSS1-208ENST00000496116 DDIT3P35638 169 aa13.63□□□□□ -0.23
CMSS1-208ENST00000496116 SRCIN1Q9C0H9 1055 aa13.63□□□□□ -0.23
CMSS1-208ENST00000496116 USP44Q9H0E7 712 aa13.63□□□□□ -0.23
CMSS1-208ENST00000496116 C19orf44Q9H6X5 657 aa13.63□□□□□ -0.23
CMSS1-208ENST00000496116 IBTKQ9P2D0 1353 aaPredicted RBP13.63□□□□□ -0.23
CMSS1-208ENST00000496116 PNMA6EA0A0J9YXQ4 647 aa13.63□□□□□ -0.23
CMSS1-208ENST00000496116 C1orf167Q5SNV9 1468 aa13.62□□□□□ -0.23
CMSS1-208ENST00000496116 DDX11L8A8MPP1 907 aa13.62□□□□□ -0.23
CMSS1-208ENST00000496116 RNMTO43148 476 aaKnown RBP13.62□□□□□ -0.23
CMSS1-208ENST00000496116 MPRIPQ6WCQ1 1025 aa13.62□□□□□ -0.23
CMSS1-208ENST00000496116 CAMTA1Q9Y6Y1 1673 aa13.62□□□□□ -0.23
CMSS1-208ENST00000496116 ERC2O15083 957 aa13.61□□□□□ -0.23
CMSS1-208ENST00000496116 MX1P20591 662 aa13.61□□□□□ -0.23
CMSS1-208ENST00000496116 CHPF2Q9P2E5 772 aa13.61□□□□□ -0.23
CMSS1-208ENST00000496116 MST1RQ04912 1400 aa13.61□□□□□ -0.23
CMSS1-208ENST00000496116 RBM42Q9BTD8 480 aaKnown RBP13.61□□□□□ -0.23
CMSS1-208ENST00000496116 SALL3Q9BXA9 1300 aa13.6□□□□□ -0.23
CMSS1-208ENST00000496116 PLEKHG5O94827 1062 aa13.6□□□□□ -0.23
CMSS1-208ENST00000496116 CD2BP2O95400 341 aaKnown RBP13.6□□□□□ -0.23
CMSS1-208ENST00000496116 DNAAF4Q8WXU2 420 aa13.6□□□□□ -0.23
CMSS1-208ENST00000496116 DBF4Q9UBU7 674 aaPredicted RBP13.6□□□□□ -0.23
CMSS1-208ENST00000496116 RAB11FIP3O75154 756 aa13.6□□□□□ -0.23
CMSS1-208ENST00000496116 SSH3Q8TE77 659 aa13.6□□□□□ -0.23
CMSS1-208ENST00000496116 LMTK3Q96Q04 1460 aa13.59□□□□□ -0.23
CMSS1-208ENST00000496116 GBP4Q96PP9 640 aa13.59□□□□□ -0.23
CMSS1-208ENST00000496116 PXDNQ92626 1479 aa13.59□□□□□ -0.23
CMSS1-208ENST00000496116 AOX1Q06278 1338 aa13.59□□□□□ -0.23
CMSS1-208ENST00000496116 PI4KAP2A4QPH2 592 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 KCNQ3O43525 872 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 ST18O60284 1047 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 ATF3P18847 181 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 RAB3GAP1Q15042 981 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 BEND3Q5T5X7 828 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 PI4KAP1Q8N8J0 262 aa13.58□□□□□ -0.23
CMSS1-208ENST00000496116 ALS2Q96Q42 1657 aa13.58□□□□□ -0.24
CMSS1-208ENST00000496116 PTMSP20962 102 aa13.58□□□□□ -0.24
CMSS1-208ENST00000496116 PPP1R42Q7Z4L9 355 aa13.58□□□□□ -0.24
CMSS1-208ENST00000496116 STAP2Q9UGK3 403 aa13.58□□□□□ -0.24
CMSS1-208ENST00000496116 AXIN2Q9Y2T1 843 aa13.58□□□□□ -0.24
CMSS1-208ENST00000496116 ERBB3P21860 1342 aa13.57□□□□□ -0.24
CMSS1-208ENST00000496116 TUBGCP6Q96RT7 1819 aa13.57□□□□□ -0.24
CMSS1-208ENST00000496116 POLA2Q14181 598 aa13.57□□□□□ -0.24
CMSS1-208ENST00000496116 L1TD1Q5T7N2 865 aaKnown RBP13.57□□□□□ -0.24
CMSS1-208ENST00000496116 TNPO1Q92973 898 aaKnown RBP13.57□□□□□ -0.24
CMSS1-208ENST00000496116 DCCP43146 1447 aa13.57□□□□□ -0.24
CMSS1-208ENST00000496116 HDAC5Q9UQL6 1122 aa13.57□□□□□ -0.24
CMSS1-208ENST00000496116 RGPD5Q99666 1765 aa13.56□□□□□ -0.24
CMSS1-208ENST00000496116 TRIM6-TRIM34B2RNG4 842 aa13.56□□□□□ -0.24
CMSS1-208ENST00000496116 SRGAP3O43295 1099 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms