RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 IPO8O15397 1037 aaKnown RBP13.16□□□□□ -0.3
HDAC3-214ENST00000495485 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
HDAC3-214ENST00000495485 NKX1-1Q15270 411 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-214ENST00000495485 MARCH10Q8NA82 808 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-214ENST00000495485 CFAP44Q96MT7 982 aa13.16□□□□□ -0.3
HDAC3-214ENST00000495485 NHSQ6T4R5 1651 aa13.15□□□□□ -0.3
HDAC3-214ENST00000495485 ALDH1L2Q3SY69 923 aa13.15□□□□□ -0.3
HDAC3-214ENST00000495485 UPF1Q92900 1129 aaKnown RBP eCLIP13.15□□□□□ -0.3
HDAC3-214ENST00000495485 BCL11BQ9C0K0 894 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-214ENST00000495485 LAS1LQ9Y4W2 734 aaKnown RBP13.15□□□□□ -0.3
HDAC3-214ENST00000495485 PLIN1O60240 522 aa13.14□□□□□ -0.31
HDAC3-214ENST00000495485 EXOSC9Q06265 439 aaKnown RBP13.14□□□□□ -0.31
HDAC3-214ENST00000495485 C1orf141Q5JVX7 400 aa13.14□□□□□ -0.31
HDAC3-214ENST00000495485 EXOC6Q8TAG9 804 aa13.14□□□□□ -0.31
HDAC3-214ENST00000495485 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
HDAC3-214ENST00000495485 BAG6P46379 1132 aa13.13□□□□□ -0.31
HDAC3-214ENST00000495485 B4GALNT3Q6L9W6 998 aa13.13□□□□□ -0.31
HDAC3-214ENST00000495485 DCAF5Q96JK2 942 aa13.13□□□□□ -0.31
HDAC3-214ENST00000495485 CHMP4BQ9H444 224 aaKnown RBP13.13□□□□□ -0.31
HDAC3-214ENST00000495485 VIRMAQ69YN4 1812 aaKnown RBP13.13□□□□□ -0.31
HDAC3-214ENST00000495485 TNS1Q9HBL0 1735 aaKnown RBP13.13□□□□□ -0.31
HDAC3-214ENST00000495485 PLSCR1O15162 318 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 BCAR3O75815 825 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 AKAP4Q5JQC9 854 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 ZKSCAN2Q63HK3 967 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 AEBP1Q8IUX7 1158 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
HDAC3-214ENST00000495485 TSR2Q969E8 191 aaKnown RBP13.12□□□□□ -0.31
HDAC3-214ENST00000495485 CRBNQ96SW2 442 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 CHMP4AQ9BY43 222 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 SCN11AQ9UI33 1791 aa13.12□□□□□ -0.31
HDAC3-214ENST00000495485 ITGB4P16144 1822 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 GNAT3A8MTJ3 354 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 CYP27B1O15528 508 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 ZNF853P0CG23 659 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 PHKG2P15735 406 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 ZNF530Q6P9A1 599 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-214ENST00000495485 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-214ENST00000495485 SMC4Q9NTJ3 1288 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 BABAM1Q9NWV8 329 aa13.11□□□□□ -0.31
HDAC3-214ENST00000495485 DOT1LQ8TEK3 1739 aa13.1□□□□□ -0.31
HDAC3-214ENST00000495485 BTAF1O14981 1849 aa13.09□□□□□ -0.31
HDAC3-214ENST00000495485 BRPF1P55201 1214 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-214ENST00000495485 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
HDAC3-214ENST00000495485 FTSJ3Q8IY81 847 aaKnown RBP13.09□□□□□ -0.31
HDAC3-214ENST00000495485 SOS1Q07889 1333 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-214ENST00000495485 ADAMTS7Q9UKP4 1686 aa13.08□□□□□ -0.31
HDAC3-214ENST00000495485 TRIM37O94972 964 aa13.08□□□□□ -0.32
HDAC3-214ENST00000495485 SMARCC1Q92922 1105 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-214ENST00000495485 MBIPQ9NS73 344 aa13.08□□□□□ -0.32
HDAC3-214ENST00000495485 MAP3K5Q99683 1374 aa13.07□□□□□ -0.32
HDAC3-214ENST00000495485 CHL1O00533 1208 aa13.07□□□□□ -0.32
HDAC3-214ENST00000495485 TWISTNBQ3B726 338 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-214ENST00000495485 DZIP1LQ8IYY4 767 aaKnown RBP13.07□□□□□ -0.32
HDAC3-214ENST00000495485 ARHGAP45Q92619 1136 aa13.07□□□□□ -0.32
HDAC3-214ENST00000495485 APBA3O96018 575 aa13.06□□□□□ -0.32
HDAC3-214ENST00000495485 FAM182BQ5T319 152 aa13.06□□□□□ -0.32
HDAC3-214ENST00000495485 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
HDAC3-214ENST00000495485 TOGARAM1Q9Y4F4 1720 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 MRC1P22897 1456 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 VAMP4O75379 141 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 SLC27A3Q5K4L6 730 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 C20orf194Q5TEA3 1177 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 ATF7IPQ6VMQ6 1270 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 CENPQQ7L2Z9 268 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-214ENST00000495485 MCM10Q7L590 875 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 SSH1Q8WYL5 1049 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 THUMPD2Q9BTF0 503 aaKnown RBP13.05□□□□□ -0.32
HDAC3-214ENST00000495485 ZNF831Q5JPB2 1677 aa13.05□□□□□ -0.32
HDAC3-214ENST00000495485 PRIM1P49642 420 aaKnown RBP13.04□□□□□ -0.32
HDAC3-214ENST00000495485 TSPYL4Q9UJ04 414 aa13.04□□□□□ -0.32
HDAC3-214ENST00000495485 DDX19BQ9UMR2 479 aa13.04□□□□□ -0.32
HDAC3-214ENST00000495485 RREB1Q92766 1687 aa13.04□□□□□ -0.32
HDAC3-214ENST00000495485 LY75O60449 1722 aa13.04□□□□□ -0.32
HDAC3-214ENST00000495485 DCTN1Q14203 1278 aa13.03□□□□□ -0.32
HDAC3-214ENST00000495485 TAF7Q15545 349 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-214ENST00000495485 CLUAP1Q96AJ1 413 aa13.03□□□□□ -0.32
HDAC3-214ENST00000495485 SYTL4Q96C24 671 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-214ENST00000495485 CAMKK2Q96RR4 588 aa13.03□□□□□ -0.32
HDAC3-214ENST00000495485 BCL2L13Q9BXK5 485 aa13.03□□□□□ -0.32
HDAC3-214ENST00000495485 API5Q9BZZ5 524 aaKnown RBP13.03□□□□□ -0.32
HDAC3-214ENST00000495485 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
HDAC3-214ENST00000495485 KDM6AO15550 1401 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-214ENST00000495485 RNMTO43148 476 aaKnown RBP13.02□□□□□ -0.33
HDAC3-214ENST00000495485 CABP4P57796 275 aa13.02□□□□□ -0.33
HDAC3-214ENST00000495485 MVPQ14764 893 aaKnown RBP13.02□□□□□ -0.33
HDAC3-214ENST00000495485 ACSBG1Q96GR2 724 aa13.02□□□□□ -0.33
HDAC3-214ENST00000495485 SLC52A2Q9HAB3 445 aa13.02□□□□□ -0.33
HDAC3-214ENST00000495485 NOB1Q9ULX3 412 aaKnown RBP13.02□□□□□ -0.33
HDAC3-214ENST00000495485 COG6Q9Y2V7 657 aa13.02□□□□□ -0.33
HDAC3-214ENST00000495485 KCNQ2O43526 872 aa13.01□□□□□ -0.33
HDAC3-214ENST00000495485 TEFQ10587 303 aa13.01□□□□□ -0.33
HDAC3-214ENST00000495485 MPRIPQ6WCQ1 1025 aa13.01□□□□□ -0.33
HDAC3-214ENST00000495485 SIPA1L3O60292 1781 aaPredicted RBP13.01□□□□□ -0.33
HDAC3-214ENST00000495485 CACNA1FO60840 1977 aa13□□□□□ -0.33
HDAC3-214ENST00000495485 TCERG1O14776 1098 aaKnown RBP13□□□□□ -0.33
HDAC3-214ENST00000495485 MRPL50Q8N5N7 158 aaKnown RBP13□□□□□ -0.33
HDAC3-214ENST00000495485 PANK1Q8TE04 598 aa13□□□□□ -0.33
HDAC3-214ENST00000495485 PIGBQ92521 554 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 140.5 ms