RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CENPCQ03188 943 aa10.05□□□□□ -0.8
VPS50-219ENST00000495039 ZSCAN10Q96SZ4 725 aaPredicted RBP10.05□□□□□ -0.8
VPS50-219ENST00000495039 OXCT2Q9BYC2 517 aaPredicted RBP10.05□□□□□ -0.8
VPS50-219ENST00000495039 PHF24Q9UPV7 400 aa10.05□□□□□ -0.8
VPS50-219ENST00000495039 GNASQ5JWF2 1037 aa10.04□□□□□ -0.8
VPS50-219ENST00000495039 GPAMQ9HCL2 828 aa10.04□□□□□ -0.8
VPS50-219ENST00000495039 LBRQ14739 615 aaKnown RBP10.03□□□□□ -0.8
VPS50-219ENST00000495039 CEP126Q9P2H0 1117 aa10.03□□□□□ -0.8
VPS50-219ENST00000495039 PHKA2P46019 1235 aa10.02□□□□□ -0.81
VPS50-219ENST00000495039 ESCO1Q5FWF5 840 aa10.02□□□□□ -0.81
VPS50-219ENST00000495039 XAGE2Q96GT9 111 aa10.02□□□□□ -0.81
VPS50-219ENST00000495039 CCDC85AQ96PX6 553 aaPredicted RBP10.02□□□□□ -0.81
VPS50-219ENST00000495039 SPOCK3Q9BQ16 436 aa10.02□□□□□ -0.81
VPS50-219ENST00000495039 HRH3Q9Y5N1 445 aa10.02□□□□□ -0.81
VPS50-219ENST00000495039 THBS1P07996 1170 aa10.01□□□□□ -0.81
VPS50-219ENST00000495039 CSB-PGBD3P0DP91 1061 aa10.01□□□□□ -0.81
VPS50-219ENST00000495039 TMEM214Q6NUQ4 689 aaKnown RBP10.01□□□□□ -0.81
VPS50-219ENST00000495039 PGBD3Q8N328 593 aa10.01□□□□□ -0.81
VPS50-219ENST00000495039 CDCA7Q9BWT1 371 aaPredicted RBP10.01□□□□□ -0.81
VPS50-219ENST00000495039 SNRKQ9NRH2 765 aa10.01□□□□□ -0.81
VPS50-219ENST00000495039 GDF2Q9UK05 429 aaPredicted RBP10□□□□□ -0.81
VPS50-219ENST00000495039 BRPF1P55201 1214 aaPredicted RBP9.99□□□□□ -0.81
VPS50-219ENST00000495039 FHDC1Q9C0D6 1143 aaPredicted RBP9.99□□□□□ -0.81
VPS50-219ENST00000495039 ITGB2P05107 769 aa9.98□□□□□ -0.81
VPS50-219ENST00000495039 C4orf17Q53FE4 359 aa9.98□□□□□ -0.81
VPS50-219ENST00000495039 GALNT6Q8NCL4 622 aa9.98□□□□□ -0.81
VPS50-219ENST00000495039 KLRG1Q96E93 195 aa9.98□□□□□ -0.81
VPS50-219ENST00000495039 MKL2Q9ULH7 1088 aa9.98□□□□□ -0.81
VPS50-219ENST00000495039 EIF4G2P78344 907 aaKnown RBP eCLIP9.97□□□□□ -0.81
VPS50-219ENST00000495039 USP4Q13107 963 aa9.97□□□□□ -0.81
VPS50-219ENST00000495039 EFHC2Q5JST6 749 aa9.97□□□□□ -0.81
VPS50-219ENST00000495039 RHBDD1Q8TEB9 315 aa9.97□□□□□ -0.81
VPS50-219ENST00000495039 RUBCNLQ9H714 662 aa9.97□□□□□ -0.81
VPS50-219ENST00000495039 ATXN7L1Q9ULK2 861 aaPredicted RBP9.97□□□□□ -0.81
VPS50-219ENST00000495039 DOLKQ9UPQ8 538 aa9.97□□□□□ -0.81
VPS50-219ENST00000495039 SHISA8B8ZZ34 492 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 ADAM23O75077 832 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 PROCP04070 461 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 MSX1P28360 303 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 SNRPNP63162 240 aaKnown RBP9.96□□□□□ -0.82
VPS50-219ENST00000495039 UBAP2LQ14157 1087 aaKnown RBP9.96□□□□□ -0.82
VPS50-219ENST00000495039 GOLGA6L1Q8N7Z2 621 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 PRM3Q9NNZ6 103 aa9.96□□□□□ -0.82
VPS50-219ENST00000495039 ALYREFQ86V81 257 aaKnown RBP9.95□□□□□ -0.82
VPS50-219ENST00000495039 BMP4P12644 408 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 SLFNL1Q499Z3 407 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 PPARGC1BQ86YN6 1023 aaKnown RBP9.94□□□□□ -0.82
VPS50-219ENST00000495039 EDARADDQ8WWZ3 215 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 SIRT1Q96EB6 747 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 RRAGCQ9HB90 399 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 ETNK1Q9HBU6 452 aa9.94□□□□□ -0.82
VPS50-219ENST00000495039 TLR1Q15399 786 aa9.93□□□□□ -0.82
VPS50-219ENST00000495039 C1orf229Q6ZS94 237 aaPredicted RBP9.93□□□□□ -0.82
VPS50-219ENST00000495039 TBC1D2BQ9UPU7 963 aa9.93□□□□□ -0.82
VPS50-219ENST00000495039 FGFR3P22607 806 aa9.92□□□□□ -0.82
VPS50-219ENST00000495039 RNF135Q8IUD6 432 aa9.92□□□□□ -0.82
VPS50-219ENST00000495039 PHTF2Q8N3S3 785 aa9.92□□□□□ -0.82
VPS50-219ENST00000495039 ABHD17AQ96GS6 310 aa9.92□□□□□ -0.82
VPS50-219ENST00000495039 CRISPLD1Q9H336 500 aa9.92□□□□□ -0.82
VPS50-219ENST00000495039 SLCO4C1Q6ZQN7 724 aa9.91□□□□□ -0.82
VPS50-219ENST00000495039 TBC1D9Q6ZT07 1266 aa9.91□□□□□ -0.82
VPS50-219ENST00000495039 KRBA1A5PL33 1030 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 AMPD1P23109 780 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 TSGA10IPQ3SY00 556 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 OXLD1Q5BKU9 147 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 FIGNL1Q6PIW4 674 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 NDFIP2Q9NV92 336 aa9.9□□□□□ -0.82
VPS50-219ENST00000495039 PIK3R2O00459 728 aa9.89□□□□□ -0.83
VPS50-219ENST00000495039 C2CD2LO14523 706 aa9.89□□□□□ -0.83
VPS50-219ENST00000495039 BNIP3LO60238 219 aa9.89□□□□□ -0.83
VPS50-219ENST00000495039 STAU1O95793 577 aaKnown RBP9.89□□□□□ -0.83
VPS50-219ENST00000495039 PLA2G4AP47712 749 aa9.89□□□□□ -0.83
VPS50-219ENST00000495039 GGA1Q9UJY5 639 aa9.89□□□□□ -0.83
VPS50-219ENST00000495039 C1orf216Q8TAB5 229 aa9.88□□□□□ -0.83
VPS50-219ENST00000495039 CHIC2Q9UKJ5 165 aa9.88□□□□□ -0.83
VPS50-219ENST00000495039 COL8A1P27658 744 aa9.87□□□□□ -0.83
VPS50-219ENST00000495039 CTBSQ01459 385 aa9.87□□□□□ -0.83
VPS50-219ENST00000495039 IRF5Q13568 498 aa9.87□□□□□ -0.83
VPS50-219ENST00000495039 K7ELQ4 463 aaPredicted RBP9.86□□□□□ -0.83
VPS50-219ENST00000495039 INHAP05111 366 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 ARAFP10398 606 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 SCNN1DP51172 638 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 GDF10P55107 478 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 GRIN2CQ14957 1233 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 PCDHGC4Q9Y5F7 938 aa9.86□□□□□ -0.83
VPS50-219ENST00000495039 EPXP11678 715 aa9.85□□□□□ -0.83
VPS50-219ENST00000495039 BAG6P46379 1132 aa9.85□□□□□ -0.83
VPS50-219ENST00000495039 LINC00114Q6XXX2 140 aa9.85□□□□□ -0.83
VPS50-219ENST00000495039 NLRP8Q86W28 1048 aa9.85□□□□□ -0.83
VPS50-219ENST00000495039 NIFKQ9BYG3 293 aaKnown RBP9.85□□□□□ -0.83
VPS50-219ENST00000495039 DNAAF2Q9NVR5 837 aaKnown RBP9.85□□□□□ -0.83
VPS50-219ENST00000495039 GNB5O14775 395 aa9.84□□□□□ -0.83
VPS50-219ENST00000495039 HOXB4P17483 251 aaPredicted RBP9.84□□□□□ -0.83
VPS50-219ENST00000495039 ATP4AP20648 1035 aa9.84□□□□□ -0.83
VPS50-219ENST00000495039 VAC14Q08AM6 782 aa9.84□□□□□ -0.83
VPS50-219ENST00000495039 MAP7D1Q3KQU3 841 aa9.84□□□□□ -0.83
VPS50-219ENST00000495039 ZCCHC2Q9C0B9 1178 aaKnown RBP9.84□□□□□ -0.83
VPS50-219ENST00000495039 AIDAQ96BJ3 306 aa9.83□□□□□ -0.84
VPS50-219ENST00000495039 BTBD6Q96KE9 485 aa9.83□□□□□ -0.84
VPS50-219ENST00000495039 ATXN7O15265 892 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms