RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 NPC1L1Q9UHC9 1359 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 SCN11AQ9UI33 1791 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 DIAPH1O60610 1272 aaKnown RBP14.38□□□□□ -0.11
NELFE-213ENST00000494956 AMOTQ4VCS5 1084 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 KLHL34Q8N239 644 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 DCAF5Q96JK2 942 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 SLC4A9Q96Q91 983 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 ARXQ96QS3 562 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 SYT17Q9BSW7 474 aa14.38□□□□□ -0.11
NELFE-213ENST00000494956 PHF14O94880 888 aa14.37□□□□□ -0.11
NELFE-213ENST00000494956 ATP6V1AP38606 617 aa14.37□□□□□ -0.11
NELFE-213ENST00000494956 C1orf141Q5JVX7 400 aa14.37□□□□□ -0.11
NELFE-213ENST00000494956 ERVV-2B6SEH9 535 aa14.36□□□□□ -0.11
NELFE-213ENST00000494956 CABP4P57796 275 aa14.36□□□□□ -0.11
NELFE-213ENST00000494956 SLC16A10Q8TF71 515 aa14.36□□□□□ -0.11
NELFE-213ENST00000494956 RBM42Q9BTD8 480 aaKnown RBP14.36□□□□□ -0.11
NELFE-213ENST00000494956 LGR6Q9HBX8 967 aa14.36□□□□□ -0.11
NELFE-213ENST00000494956 PLEKHG2Q9H7P9 1386 aa14.35□□□□□ -0.11
NELFE-213ENST00000494956 U2SURPO15042 1029 aaKnown RBP14.35□□□□□ -0.11
NELFE-213ENST00000494956 HSP90AB1P08238 724 aaKnown RBP14.35□□□□□ -0.11
NELFE-213ENST00000494956 MTHFSDQ2M296 383 aaKnown RBP14.35□□□□□ -0.11
NELFE-213ENST00000494956 NFATC2IPQ8NCF5 419 aa14.35□□□□□ -0.11
NELFE-213ENST00000494956 AK7Q96M32 723 aa14.35□□□□□ -0.11
NELFE-213ENST00000494956 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
NELFE-213ENST00000494956 COL5A3P25940 1745 aaPredicted RBP14.33□□□□□ -0.12
NELFE-213ENST00000494956 PTCD1O75127 700 aaKnown RBP14.33□□□□□ -0.12
NELFE-213ENST00000494956 POLD1P28340 1107 aa14.33□□□□□ -0.12
NELFE-213ENST00000494956 MYH14Q7Z406 1995 aaKnown RBP14.33□□□□□ -0.12
NELFE-213ENST00000494956 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.32□□□□□ -0.12
NELFE-213ENST00000494956 GNPATO15228 680 aa14.32□□□□□ -0.12
NELFE-213ENST00000494956 PPP2R1AP30153 589 aa14.32□□□□□ -0.12
NELFE-213ENST00000494956 AKAP4Q5JQC9 854 aa14.32□□□□□ -0.12
NELFE-213ENST00000494956 NLGN2Q8NFZ4 835 aa14.32□□□□□ -0.12
NELFE-213ENST00000494956 RNMTO43148 476 aaKnown RBP14.31□□□□□ -0.12
NELFE-213ENST00000494956 TJP1Q07157 1748 aa14.31□□□□□ -0.12
NELFE-213ENST00000494956 SLC39A6Q13433 755 aa14.3□□□□□ -0.12
NELFE-213ENST00000494956 ZNF831Q5JPB2 1677 aa14.3□□□□□ -0.12
NELFE-213ENST00000494956 SLC52A2Q9HAB3 445 aa14.29□□□□□ -0.12
NELFE-213ENST00000494956 ADAMTS7Q9UKP4 1686 aa14.29□□□□□ -0.12
NELFE-213ENST00000494956 FLAD1Q8NFF5 587 aa14.28□□□□□ -0.12
NELFE-213ENST00000494956 PHACTR3Q96KR7 559 aa14.28□□□□□ -0.12
NELFE-213ENST00000494956 MAP3K5Q99683 1374 aa14.28□□□□□ -0.12
NELFE-213ENST00000494956 MRC1P22897 1456 aa14.27□□□□□ -0.12
NELFE-213ENST00000494956 DCAF8L1A6NGE4 600 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 YY1P25490 414 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 SSFA2P28290 1259 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 PRKAR2BP31323 418 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.13
NELFE-213ENST00000494956 CFAP53Q96M91 514 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 RSPH6AQ9H0K4 717 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 C4AP0C0L4 1744 aa14.27□□□□□ -0.13
NELFE-213ENST00000494956 KCPQ6ZWJ8 1503 aa14.25□□□□□ -0.13
NELFE-213ENST00000494956 CNTNAP4Q9C0A0 1308 aa14.25□□□□□ -0.13
NELFE-213ENST00000494956 U2AF1L5P0DN76 240 aaPredicted RBP14.25□□□□□ -0.13
NELFE-213ENST00000494956 CRKLP46109 303 aaKnown RBP14.25□□□□□ -0.13
NELFE-213ENST00000494956 U2AF1Q01081 240 aaKnown RBP eCLIP14.25□□□□□ -0.13
NELFE-213ENST00000494956 DNAJC10Q8IXB1 793 aa14.25□□□□□ -0.13
NELFE-213ENST00000494956 IL17REQ8NFR9 667 aa14.25□□□□□ -0.13
NELFE-213ENST00000494956 ARHGEF1Q92888 912 aaKnown RBP14.25□□□□□ -0.13
NELFE-213ENST00000494956 WWC3Q9ULE0 1092 aa14.25□□□□□ -0.13
NELFE-213ENST00000494956 RTCBQ9Y3I0 505 aaKnown RBP14.25□□□□□ -0.13
NELFE-213ENST00000494956 SIPA1L3O60292 1781 aaPredicted RBP14.24□□□□□ -0.13
NELFE-213ENST00000494956 GPR162Q16538 588 aa14.24□□□□□ -0.13
NELFE-213ENST00000494956 TRAPPC3LQ5T215 181 aa14.24□□□□□ -0.13
NELFE-213ENST00000494956 CICQ96RK0 1608 aaPredicted RBP14.23□□□□□ -0.13
NELFE-213ENST00000494956 GNAT3A8MTJ3 354 aa14.23□□□□□ -0.13
NELFE-213ENST00000494956 RPS6KA4O75676 772 aa14.23□□□□□ -0.13
NELFE-213ENST00000494956 HMGB2P26583 209 aaKnown RBP14.23□□□□□ -0.13
NELFE-213ENST00000494956 DDX10Q13206 875 aaKnown RBP14.23□□□□□ -0.13
NELFE-213ENST00000494956 RC3H1Q5TC82 1133 aaKnown RBP14.23□□□□□ -0.13
NELFE-213ENST00000494956 SRP68Q9UHB9 627 aaKnown RBP14.23□□□□□ -0.13
NELFE-213ENST00000494956 UBR2Q8IWV8 1755 aa14.23□□□□□ -0.13
NELFE-213ENST00000494956 CHD4Q14839 1912 aa14.23□□□□□ -0.13
NELFE-213ENST00000494956 MMP10P09238 476 aa14.22□□□□□ -0.13
NELFE-213ENST00000494956 YBX3P16989 372 aaKnown RBP eCLIP14.22□□□□□ -0.137e-7■□□□□ 10.2
NELFE-213ENST00000494956 INTS5Q6P9B9 1019 aaKnown RBP14.22□□□□□ -0.13
NELFE-213ENST00000494956 GAS2L2Q8NHY3 880 aa14.22□□□□□ -0.13
NELFE-213ENST00000494956 NUDCQ9Y266 331 aa14.22□□□□□ -0.13
NELFE-213ENST00000494956 KCNQ3O43525 872 aa14.21□□□□□ -0.13
NELFE-213ENST00000494956 HOXD11P31277 338 aaPredicted RBP14.21□□□□□ -0.13
NELFE-213ENST00000494956 DLG5Q8TDM6 1919 aa14.2□□□□□ -0.14
NELFE-213ENST00000494956 CYP19A1P11511 503 aaPredicted RBP14.2□□□□□ -0.14
NELFE-213ENST00000494956 GYS1P13807 737 aa14.2□□□□□ -0.14
NELFE-213ENST00000494956 RFC4P35249 363 aa14.2□□□□□ -0.14
NELFE-213ENST00000494956 DCTN1Q14203 1278 aa14.2□□□□□ -0.14
NELFE-213ENST00000494956 N4BP2Q86UW6 1770 aaPredicted RBP14.19□□□□□ -0.14
NELFE-213ENST00000494956 TEFQ10587 303 aa14.19□□□□□ -0.14
NELFE-213ENST00000494956 MCM10Q7L590 875 aa14.19□□□□□ -0.14
NELFE-213ENST00000494956 ZNF496Q96IT1 587 aaPredicted RBP14.19□□□□□ -0.14
NELFE-213ENST00000494956 CCDC87Q9NVE4 849 aa14.19□□□□□ -0.14
NELFE-213ENST00000494956 ZBTB1Q9Y2K1 713 aa14.19□□□□□ -0.14
NELFE-213ENST00000494956 CD2APQ9Y5K6 639 aa14.18□□□□□ -0.14
NELFE-213ENST00000494956 CEMIPQ8WUJ3 1361 aa14.18□□□□□ -0.14
NELFE-213ENST00000494956 KIAA1551Q9HCM1 1747 aa14.18□□□□□ -0.14
NELFE-213ENST00000494956 FCHSD2O94868 740 aa14.17□□□□□ -0.14
NELFE-213ENST00000494956 FKBP8Q14318 412 aa14.17□□□□□ -0.14
NELFE-213ENST00000494956 ZNF790Q6PG37 636 aa14.17□□□□□ -0.14
NELFE-213ENST00000494956 TTC5Q8N0Z6 440 aa14.17□□□□□ -0.14
NELFE-213ENST00000494956 SOS1Q07889 1333 aaPredicted RBP14.16□□□□□ -0.14
NELFE-213ENST00000494956 USP42Q9H9J4 1324 aaKnown RBP14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms