RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 TEFQ10587 303 aa23.41■■□□□ 1.34
TSPAN4-212ENST00000494815 MPRIPQ6WCQ1 1025 aa23.4■■□□□ 1.34
TSPAN4-212ENST00000494815 ADAMTS7Q9UKP4 1686 aa23.4■■□□□ 1.34
TSPAN4-212ENST00000494815 SPG7Q9UQ90 795 aa23.4■■□□□ 1.34
TSPAN4-212ENST00000494815 MEGF6O75095 1541 aa23.39■■□□□ 1.34
TSPAN4-212ENST00000494815 SLC4A2P04920 1241 aa23.39■■□□□ 1.33
TSPAN4-212ENST00000494815 KDM3BQ7LBC6 1761 aa23.39■■□□□ 1.33
TSPAN4-212ENST00000494815 HDAC1Q13547 482 aaPredicted RBP23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 CCDC30Q5VVM6 783 aa23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 STK31Q9BXU1 1019 aa23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 RGS12O14924 1447 aa23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 WDR17Q8IZU2 1322 aa23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 ZBTB7BO15156 539 aaPredicted RBP23.38■■□□□ 1.33
TSPAN4-212ENST00000494815 HOXB7P09629 217 aa23.37■■□□□ 1.33
TSPAN4-212ENST00000494815 INTS3Q68E01 1043 aaKnown RBP23.37■■□□□ 1.33
TSPAN4-212ENST00000494815 CHMP4AQ9BY43 222 aa23.37■■□□□ 1.33
TSPAN4-212ENST00000494815 AHDC1Q5TGY3 1603 aaPredicted RBP23.36■■□□□ 1.33
TSPAN4-212ENST00000494815 COL5A2P05997 1499 aaPredicted RBP23.36■■□□□ 1.33
TSPAN4-212ENST00000494815 ROBO1Q9Y6N7 1651 aa23.36■■□□□ 1.33
TSPAN4-212ENST00000494815 EIF4A1P60842 406 aaKnown RBP23.35■■□□□ 1.33
TSPAN4-212ENST00000494815 SKAP1Q86WV1 359 aa23.35■■□□□ 1.33
TSPAN4-212ENST00000494815 BTBD11A6QL63 1104 aa23.35■■□□□ 1.33
TSPAN4-212ENST00000494815 VIRMAQ69YN4 1812 aaKnown RBP23.34■■□□□ 1.33
TSPAN4-212ENST00000494815 PKD1L3Q7Z443 1732 aa23.34■■□□□ 1.33
TSPAN4-212ENST00000494815 CACNA1FO60840 1977 aa23.33■■□□□ 1.33
TSPAN4-212ENST00000494815 PHKG2P15735 406 aa23.33■■□□□ 1.33
TSPAN4-212ENST00000494815 IFNL2Q8IZJ0 200 aa23.33■■□□□ 1.32
TSPAN4-212ENST00000494815 SIPA1L3O60292 1781 aaPredicted RBP23.32■■□□□ 1.32
TSPAN4-212ENST00000494815 TOM1L2Q6ZVM7 507 aa23.31■■□□□ 1.32
TSPAN4-212ENST00000494815 HDGFL1Q5TGJ6 251 aa23.3■■□□□ 1.32
TSPAN4-212ENST00000494815 KDM6AO15550 1401 aaPredicted RBP23.3■■□□□ 1.32
TSPAN4-212ENST00000494815 IL27Q8NEV9 243 aa23.3■■□□□ 1.32
TSPAN4-212ENST00000494815 HSP90AB1P08238 724 aaKnown RBP23.29■■□□□ 1.32
TSPAN4-212ENST00000494815 G2E3Q7L622 706 aa23.29■■□□□ 1.32
TSPAN4-212ENST00000494815 CARD10Q9BWT7 1032 aa23.29■■□□□ 1.32
TSPAN4-212ENST00000494815 SCN11AQ9UI33 1791 aa23.29■■□□□ 1.32
TSPAN4-212ENST00000494815 PARP4Q9UKK3 1724 aaKnown RBP23.28■■□□□ 1.32
TSPAN4-212ENST00000494815 RGS3P49796 1198 aa23.28■■□□□ 1.32
TSPAN4-212ENST00000494815 FLIIQ13045 1269 aa23.28■■□□□ 1.32
TSPAN4-212ENST00000494815 DCAF5Q96JK2 942 aa23.28■■□□□ 1.32
TSPAN4-212ENST00000494815 HEG1Q9ULI3 1381 aa23.28■■□□□ 1.32
TSPAN4-212ENST00000494815 COL22A1Q8NFW1 1626 aaPredicted RBP23.27■■□□□ 1.32
TSPAN4-212ENST00000494815 SMC5Q8IY18 1101 aa23.27■■□□□ 1.32
TSPAN4-212ENST00000494815 SLC52A2Q9HAB3 445 aa23.27■■□□□ 1.32
TSPAN4-212ENST00000494815 CYP27B1O15528 508 aa23.27■■□□□ 1.32
TSPAN4-212ENST00000494815 KCNQ3O43525 872 aa23.27■■□□□ 1.32
TSPAN4-212ENST00000494815 MRC1P22897 1456 aa23.26■■□□□ 1.31
TSPAN4-212ENST00000494815 CCT4P50991 539 aaKnown RBP23.26■■□□□ 1.31
TSPAN4-212ENST00000494815 PDZRN3Q9UPQ7 1066 aa23.26■■□□□ 1.31
TSPAN4-212ENST00000494815 NECTIN2Q92692 538 aa23.24■■□□□ 1.31
TSPAN4-212ENST00000494815 EVA1CP58658 441 aa23.24■■□□□ 1.31
TSPAN4-212ENST00000494815 FKBP5Q13451 457 aaPredicted RBP23.24■■□□□ 1.31
TSPAN4-212ENST00000494815 PCDH11XQ9BZA7 1347 aa23.23■■□□□ 1.31
TSPAN4-212ENST00000494815 PCDH11YQ9BZA8 1340 aa23.23■■□□□ 1.31
TSPAN4-212ENST00000494815 GIGYF1O75420 1035 aaPredicted RBP23.23■■□□□ 1.31
TSPAN4-212ENST00000494815 IL2RBP14784 551 aa23.23■■□□□ 1.31
TSPAN4-212ENST00000494815 PXDNLA1KZ92 1463 aa23.22■■□□□ 1.31
TSPAN4-212ENST00000494815 LARP1Q6PKG0 1096 aaKnown RBP23.22■■□□□ 1.31
TSPAN4-212ENST00000494815 ZCRB1Q8TBF4 217 aaKnown RBP23.22■■□□□ 1.31
TSPAN4-212ENST00000494815 STRN4Q9NRL3 753 aa23.22■■□□□ 1.31
TSPAN4-212ENST00000494815 FAM161AQ3B820 660 aa23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 C1orf115Q9H7X2 142 aa23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 COL14A1Q05707 1796 aaKnown RBP23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 F6X3S4 739 aa23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 EIF2S2P20042 333 aaKnown RBP23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 ZNF790Q6PG37 636 aa23.21■■□□□ 1.31
TSPAN4-212ENST00000494815 GCC1Q96CN9 775 aa23.2■■□□□ 1.3
TSPAN4-212ENST00000494815 NFKBIBQ15653 356 aa23.2■■□□□ 1.3
TSPAN4-212ENST00000494815 SLC4A10Q6U841 1118 aa23.2■■□□□ 1.3
TSPAN4-212ENST00000494815 NFATC2IPQ8NCF5 419 aa23.2■■□□□ 1.3
TSPAN4-212ENST00000494815 DBF4Q9UBU7 674 aaPredicted RBP23.19■■□□□ 1.3
TSPAN4-212ENST00000494815 C8orf34Q49A92 452 aa23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 SIRT2Q8IXJ6 389 aa23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 CHPF2Q9P2E5 772 aa23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 GSE1Q14687 1217 aa23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 BTG4Q9NY30 223 aa23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 N4BP2Q86UW6 1770 aaPredicted RBP23.18■■□□□ 1.3
TSPAN4-212ENST00000494815 TOM1O60784 492 aa23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 RPAP2Q8IXW5 612 aaPredicted RBP23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 DAXXQ9UER7 740 aaPredicted RBP23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 ATP10DQ9P241 1426 aa23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 COL16A1Q07092 1604 aaPredicted RBP23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 NUCB1Q02818 461 aa23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 MEIS3Q99687 375 aa23.17■■□□□ 1.3
TSPAN4-212ENST00000494815 NKX1-1Q15270 411 aaPredicted RBP23.16■■□□□ 1.3
TSPAN4-212ENST00000494815 PHAXQ9H814 394 aaKnown RBP23.16■■□□□ 1.3
TSPAN4-212ENST00000494815 PHLPP1O60346 1717 aa23.16■■□□□ 1.3
TSPAN4-212ENST00000494815 ANKRD44Q8N8A2 993 aa23.16■■□□□ 1.3
TSPAN4-212ENST00000494815 CABP4P57796 275 aa23.15■■□□□ 1.3
TSPAN4-212ENST00000494815 ERVV-2B6SEH9 535 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 SLC39A6Q13433 755 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 TTC5Q8N0Z6 440 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 GNAI3P08754 354 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 SLC4A3P48751 1232 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 CEP85Q6P2H3 762 aa23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 RTN4Q9NQC3 1192 aaKnown RBP23.13■■□□□ 1.29
TSPAN4-212ENST00000494815 SHANK3Q9BYB0 1731 aa23.12■■□□□ 1.29
TSPAN4-212ENST00000494815 CHD1LQ86WJ1 897 aa23.11■■□□□ 1.29
TSPAN4-212ENST00000494815 HYPKQ9NX55 129 aa23.11■■□□□ 1.29
TSPAN4-212ENST00000494815 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms