RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 MCM10Q7L590 875 aa17.92■□□□□ 0.46
COL1A1-208ENST00000494334 RUNDC1Q96C34 613 aa17.92■□□□□ 0.46
COL1A1-208ENST00000494334 ANO8Q9HCE9 1232 aaPredicted RBP17.92■□□□□ 0.46
COL1A1-208ENST00000494334 CEMIPQ8WUJ3 1361 aa17.91■□□□□ 0.46
COL1A1-208ENST00000494334 ADAMTS7Q9UKP4 1686 aa17.91■□□□□ 0.46
COL1A1-208ENST00000494334 DCTN1Q14203 1278 aa17.91■□□□□ 0.46
COL1A1-208ENST00000494334 R3HDM1Q15032 1099 aaKnown RBP17.91■□□□□ 0.46
COL1A1-208ENST00000494334 NUP188Q5SRE5 1749 aa17.91■□□□□ 0.46
COL1A1-208ENST00000494334 SCN11AQ9UI33 1791 aa17.91■□□□□ 0.46
COL1A1-208ENST00000494334 MRC1P22897 1456 aa17.9■□□□□ 0.46
COL1A1-208ENST00000494334 LOC102724428A0A0B4J2F2 783 aa17.9■□□□□ 0.46
COL1A1-208ENST00000494334 SIK1P57059 783 aa17.9■□□□□ 0.46
COL1A1-208ENST00000494334 TEFQ10587 303 aa17.9■□□□□ 0.46
COL1A1-208ENST00000494334 PSDA5PKW4 1024 aaPredicted RBP17.89■□□□□ 0.45
COL1A1-208ENST00000494334 TMPOP42166 694 aaKnown RBP17.89■□□□□ 0.45
COL1A1-208ENST00000494334 RIPK4P57078 832 aa17.89■□□□□ 0.45
COL1A1-208ENST00000494334 SLC39A6Q13433 755 aa17.89■□□□□ 0.45
COL1A1-208ENST00000494334 LY75O60449 1722 aa17.89■□□□□ 0.45
COL1A1-208ENST00000494334 SLC15A2Q16348 729 aa17.88■□□□□ 0.45
COL1A1-208ENST00000494334 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
COL1A1-208ENST00000494334 SLC4A9Q96Q91 983 aa17.88■□□□□ 0.45
COL1A1-208ENST00000494334 RBM42Q9BTD8 480 aaKnown RBP17.88■□□□□ 0.45
COL1A1-208ENST00000494334 STK32BQ9NY57 414 aa17.88■□□□□ 0.45
COL1A1-208ENST00000494334 RRP7AQ9Y3A4 280 aaKnown RBP17.88■□□□□ 0.45
COL1A1-208ENST00000494334 PTCD1O75127 700 aaKnown RBP17.87■□□□□ 0.45
COL1A1-208ENST00000494334 ATP6V1AP38606 617 aa17.87■□□□□ 0.45
COL1A1-208ENST00000494334 ZNF827Q17R98 1081 aa17.87■□□□□ 0.45
COL1A1-208ENST00000494334 AKT1S1Q96B36 256 aa17.87■□□□□ 0.45
COL1A1-208ENST00000494334 ITPK1Q13572 414 aa17.86■□□□□ 0.45
COL1A1-208ENST00000494334 NEUROD2Q15784 382 aa17.86■□□□□ 0.45
COL1A1-208ENST00000494334 BTBD11A6QL63 1104 aa17.85■□□□□ 0.45
COL1A1-208ENST00000494334 APAF1O14727 1248 aa17.85■□□□□ 0.45
COL1A1-208ENST00000494334 THUMPD2Q9BTF0 503 aaKnown RBP17.85■□□□□ 0.45
COL1A1-208ENST00000494334 PAPPAQ13219 1627 aa17.84■□□□□ 0.45
COL1A1-208ENST00000494334 HMGB2P26583 209 aaKnown RBP17.84■□□□□ 0.45
COL1A1-208ENST00000494334 ZNF790Q6PG37 636 aa17.84■□□□□ 0.45
COL1A1-208ENST00000494334 LINC00116Q8NCU8 138 aa17.84■□□□□ 0.45
COL1A1-208ENST00000494334 TAF7Q15545 349 aaPredicted RBP17.83■□□□□ 0.44
COL1A1-208ENST00000494334 TTC5Q8N0Z6 440 aa17.83■□□□□ 0.44
COL1A1-208ENST00000494334 TRIM35Q9UPQ4 493 aa17.83■□□□□ 0.44
COL1A1-208ENST00000494334 VIRMAQ69YN4 1812 aaKnown RBP17.82■□□□□ 0.44
COL1A1-208ENST00000494334 KCNQ3O43525 872 aa17.82■□□□□ 0.44
COL1A1-208ENST00000494334 LMOD3Q0VAK6 560 aa17.82■□□□□ 0.44
COL1A1-208ENST00000494334 FAM9BQ8IZU0 186 aa17.82■□□□□ 0.44
COL1A1-208ENST00000494334 CCER2I3L3R5 266 aa17.81■□□□□ 0.44
COL1A1-208ENST00000494334 TFCP2L1Q9NZI6 479 aa17.81■□□□□ 0.44
COL1A1-208ENST00000494334 DLG5Q8TDM6 1919 aa17.8■□□□□ 0.44
COL1A1-208ENST00000494334 ZNF496Q96IT1 587 aaPredicted RBP17.8■□□□□ 0.44
COL1A1-208ENST00000494334 PDGFDQ9GZP0 370 aaPredicted RBP17.8■□□□□ 0.44
COL1A1-208ENST00000494334 MIS18AQ9NYP9 233 aa17.8■□□□□ 0.44
COL1A1-208ENST00000494334 SIPA1L3O60292 1781 aaPredicted RBP17.79■□□□□ 0.44
COL1A1-208ENST00000494334 KCPQ6ZWJ8 1503 aa17.79■□□□□ 0.44
COL1A1-208ENST00000494334 DNAJC10Q8IXB1 793 aa17.79■□□□□ 0.44
COL1A1-208ENST00000494334 VSIG10Q8N0Z9 540 aa17.79■□□□□ 0.44
COL1A1-208ENST00000494334 PNPLA7Q6ZV29 1317 aa17.78■□□□□ 0.44
COL1A1-208ENST00000494334 MIER1Q8N108 512 aa17.78■□□□□ 0.44
COL1A1-208ENST00000494334 AK7Q96M32 723 aa17.78■□□□□ 0.44
COL1A1-208ENST00000494334 FMNL2Q96PY5 1086 aa17.78■□□□□ 0.44
COL1A1-208ENST00000494334 C5P01031 1676 aa17.77■□□□□ 0.44
COL1A1-208ENST00000494334 SENP3-EIF4A1A0A087X0R7 540 aa17.77■□□□□ 0.44
COL1A1-208ENST00000494334 RC3H1Q5TC82 1133 aaKnown RBP17.77■□□□□ 0.44
COL1A1-208ENST00000494334 AMIGO3Q86WK7 504 aa17.77■□□□□ 0.44
COL1A1-208ENST00000494334 HEG1Q9ULI3 1381 aa17.77■□□□□ 0.43
COL1A1-208ENST00000494334 SMIM5Q71RC9 77 aa17.76■□□□□ 0.43
COL1A1-208ENST00000494334 TAF1LQ8IZX4 1826 aa17.76■□□□□ 0.43
COL1A1-208ENST00000494334 ZNF831Q5JPB2 1677 aa17.76■□□□□ 0.43
COL1A1-208ENST00000494334 C4BP0C0L5 1744 aa17.75■□□□□ 0.43
COL1A1-208ENST00000494334 CNTNAP4Q9C0A0 1308 aa17.75■□□□□ 0.43
COL1A1-208ENST00000494334 GNPATO15228 680 aa17.75■□□□□ 0.43
COL1A1-208ENST00000494334 CYP19A1P11511 503 aaPredicted RBP17.75■□□□□ 0.43
COL1A1-208ENST00000494334 COL23A1Q86Y22 540 aaPredicted RBP17.75■□□□□ 0.43
COL1A1-208ENST00000494334 CRKLP46109 303 aaKnown RBP17.74■□□□□ 0.43
COL1A1-208ENST00000494334 BABAM1Q9NWV8 329 aa17.74■□□□□ 0.43
COL1A1-208ENST00000494334 TSPYL4Q9UJ04 414 aa17.74■□□□□ 0.43
COL1A1-208ENST00000494334 UBR2Q8IWV8 1755 aa17.74■□□□□ 0.43
COL1A1-208ENST00000494334 RPS6KA4O75676 772 aa17.73■□□□□ 0.43
COL1A1-208ENST00000494334 PHF14O94880 888 aa17.73■□□□□ 0.43
COL1A1-208ENST00000494334 SSFA2P28290 1259 aa17.73■□□□□ 0.43
COL1A1-208ENST00000494334 EIF4A1P60842 406 aaKnown RBP17.73■□□□□ 0.43
COL1A1-208ENST00000494334 CCDC27Q2M243 656 aa17.73■□□□□ 0.43
COL1A1-208ENST00000494334 NCBP3Q53F19 620 aaKnown RBP17.73■□□□□ 0.43
COL1A1-208ENST00000494334 INTS5Q6P9B9 1019 aaKnown RBP17.73■□□□□ 0.43
COL1A1-208ENST00000494334 FLAD1Q8NFF5 587 aa17.73■□□□□ 0.43
COL1A1-208ENST00000494334 TEX13AQ9BXU3 409 aaPredicted RBP17.73■□□□□ 0.43
COL1A1-208ENST00000494334 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.72■□□□□ 0.43
COL1A1-208ENST00000494334 PRAMEF22A3QJZ6 481 aa17.72■□□□□ 0.43
COL1A1-208ENST00000494334 CHL1O00533 1208 aa17.72■□□□□ 0.43
COL1A1-208ENST00000494334 ZBTB7AO95365 584 aa17.72■□□□□ 0.43
COL1A1-208ENST00000494334 SNRPA1P09661 255 aaKnown RBP17.72■□□□□ 0.43
COL1A1-208ENST00000494334 RTCBQ9Y3I0 505 aaKnown RBP17.72■□□□□ 0.43
COL1A1-208ENST00000494334 LAS1LQ9Y4W2 734 aaKnown RBP17.72■□□□□ 0.43
COL1A1-208ENST00000494334 USP16Q9Y5T5 823 aa17.72■□□□□ 0.43
COL1A1-208ENST00000494334 TJP1Q07157 1748 aa17.72■□□□□ 0.43
COL1A1-208ENST00000494334 MSH5O43196 834 aa17.71■□□□□ 0.43
COL1A1-208ENST00000494334 STARD3NLO95772 234 aa17.71■□□□□ 0.43
COL1A1-208ENST00000494334 SLC16A10Q8TF71 515 aa17.71■□□□□ 0.43
COL1A1-208ENST00000494334 CCDC87Q9NVE4 849 aa17.71■□□□□ 0.43
COL1A1-208ENST00000494334 CICQ96RK0 1608 aaPredicted RBP17.71■□□□□ 0.43
COL1A1-208ENST00000494334 COL5A3P25940 1745 aaPredicted RBP17.7■□□□□ 0.42
COL1A1-208ENST00000494334 TRAPPC3LQ5T215 181 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms