RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 TRIM27P14373 513 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 WAPLQ7Z5K2 1190 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 SMTNL1A8MU46 457 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 AMOTQ4VCS5 1084 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 TAF7Q15545 349 aaPredicted RBP22.47■■□□□ 1.19
COL27A1-207ENST00000494090 DEF6Q9H4E7 631 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 IMMTQ16891 758 aaKnown RBP22.46■■□□□ 1.19
COL27A1-207ENST00000494090 PPP1R1BQ9UD71 204 aaPredicted RBP22.46■■□□□ 1.19
COL27A1-207ENST00000494090 LARP1Q6PKG0 1096 aaKnown RBP22.46■■□□□ 1.19
COL27A1-207ENST00000494090 SH2B1Q9NRF2 756 aaPredicted RBP22.46■■□□□ 1.19
COL27A1-207ENST00000494090 LAMC3Q9Y6N6 1575 aa22.46■■□□□ 1.19
COL27A1-207ENST00000494090 ZHX3Q9H4I2 956 aa22.45■■□□□ 1.18
COL27A1-207ENST00000494090 ZSCAN29Q8IWY8 852 aaPredicted RBP22.45■■□□□ 1.18
COL27A1-207ENST00000494090 CCDC191Q8NCU4 936 aa22.45■■□□□ 1.18
COL27A1-207ENST00000494090 CEP131Q9UPN4 1083 aa22.45■■□□□ 1.18
COL27A1-207ENST00000494090 DHX29Q7Z478 1369 aaKnown RBP22.45■■□□□ 1.18
COL27A1-207ENST00000494090 PRPF40BQ6NWY9 871 aaKnown RBP22.44■■□□□ 1.18
COL27A1-207ENST00000494090 CCDC83Q8IWF9 413 aa22.44■■□□□ 1.18
COL27A1-207ENST00000494090 AIDAQ96BJ3 306 aa22.44■■□□□ 1.18
COL27A1-207ENST00000494090 PTPRCP08575 1304 aa22.44■■□□□ 1.18
COL27A1-207ENST00000494090 NME9Q86XW9 330 aa22.44■■□□□ 1.18
COL27A1-207ENST00000494090 CCDC183Q5T5S1 534 aa22.43■■□□□ 1.18
COL27A1-207ENST00000494090 TANGO6Q9C0B7 1094 aa22.43■■□□□ 1.18
COL27A1-207ENST00000494090 FBXO3Q9UK99 471 aa22.43■■□□□ 1.18
COL27A1-207ENST00000494090 SCAND2PQ9GZW5 306 aaPredicted RBP22.43■■□□□ 1.18
COL27A1-207ENST00000494090 U3KPZ7 1027 aaPredicted RBP22.43■■□□□ 1.18
COL27A1-207ENST00000494090 DISP3Q9P2K9 1392 aa22.43■■□□□ 1.18
COL27A1-207ENST00000494090 ZRSR2Q15696 482 aaKnown RBP22.42■■□□□ 1.18
COL27A1-207ENST00000494090 BMP2KLQ5H9B9 411 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 LEKR1Q6ZMV7 388 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 ANKRD18AQ8IVF6 992 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 EMILIN1Q9Y6C2 1016 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 STK11IPQ8N1F8 1099 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 GRIN2AQ12879 1464 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 DESP17661 470 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 TNPO1Q92973 898 aaKnown RBP22.42■■□□□ 1.18
COL27A1-207ENST00000494090 DDX11Q96FC9 970 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 IL16Q14005 1332 aa22.42■■□□□ 1.18
COL27A1-207ENST00000494090 ERLIN1O75477 346 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 HSP90AB3PQ58FF7 597 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 IFIT1P09914 478 aaKnown RBP22.41■■□□□ 1.18
COL27A1-207ENST00000494090 FILIP1Q7Z7B0 1213 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 METTL24Q5JXM2 366 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 IDH1O75874 414 aaKnown RBP22.41■■□□□ 1.18
COL27A1-207ENST00000494090 TMOD3Q9NYL9 352 aa22.41■■□□□ 1.18
COL27A1-207ENST00000494090 CCDC181Q5TID7 509 aa22.4■■□□□ 1.18
COL27A1-207ENST00000494090 ZC3H6P61129 1189 aaKnown RBP22.4■■□□□ 1.18
COL27A1-207ENST00000494090 GOLGA6L10A6NI86 522 aa22.4■■□□□ 1.18
COL27A1-207ENST00000494090 SSFA2P28290 1259 aa22.4■■□□□ 1.18
COL27A1-207ENST00000494090 ZNF76P36508 570 aa22.4■■□□□ 1.18
COL27A1-207ENST00000494090 H0YHG0 523 aa22.39■■□□□ 1.18
COL27A1-207ENST00000494090 MPHOSPH10O00566 681 aaKnown RBP22.39■■□□□ 1.18
COL27A1-207ENST00000494090 CAVIN4Q5BKX8 364 aa22.39■■□□□ 1.18
COL27A1-207ENST00000494090 AXDND1Q5T1B0 1012 aaPredicted RBP22.39■■□□□ 1.18
COL27A1-207ENST00000494090 IQCEQ6IPM2 695 aa22.39■■□□□ 1.18
COL27A1-207ENST00000494090 FERMT3Q86UX7 667 aa22.39■■□□□ 1.18
COL27A1-207ENST00000494090 RRP9O43818 475 aaKnown RBP22.39■■□□□ 1.17
COL27A1-207ENST00000494090 CD109Q6YHK3 1445 aa22.39■■□□□ 1.17
COL27A1-207ENST00000494090 WASLO00401 505 aaPredicted RBP22.38■■□□□ 1.17
COL27A1-207ENST00000494090 LIMCH1Q9UPQ0 1083 aa22.38■■□□□ 1.17
COL27A1-207ENST00000494090 F6X3S4 739 aa22.38■■□□□ 1.17
COL27A1-207ENST00000494090 CCDC196A0A1B0GTZ2 297 aa22.38■■□□□ 1.17
COL27A1-207ENST00000494090 CAMK4Q16566 473 aa22.38■■□□□ 1.17
COL27A1-207ENST00000494090 DNAAF4Q8WXU2 420 aa22.38■■□□□ 1.17
COL27A1-207ENST00000494090 C14orf93Q9H972 538 aaKnown RBP22.38■■□□□ 1.17
COL27A1-207ENST00000494090 HMGB1P09429 215 aaKnown RBP22.37■■□□□ 1.17
COL27A1-207ENST00000494090 LRRFIP2Q9Y608 721 aaKnown RBP22.37■■□□□ 1.17
COL27A1-207ENST00000494090 IGHDP01880 384 aa22.37■■□□□ 1.17
COL27A1-207ENST00000494090 BOLA2Q9H3K6 86 aa22.37■■□□□ 1.17
COL27A1-207ENST00000494090 TBC1D32Q96NH3 1257 aa22.37■■□□□ 1.17
COL27A1-207ENST00000494090 SSBP05455 408 aaKnown RBP eCLIP22.37■■□□□ 1.17
COL27A1-207ENST00000494090 TBC1D9Q6ZT07 1266 aa22.37■■□□□ 1.17
COL27A1-207ENST00000494090 BIVM-ERCC5R4GMW8 1640 aa22.36■■□□□ 1.17
COL27A1-207ENST00000494090 FAM177A1Q8N128 213 aaPredicted RBP22.36■■□□□ 1.17
COL27A1-207ENST00000494090 NOS1P29475 1434 aa22.36■■□□□ 1.17
COL27A1-207ENST00000494090 KIF2AO00139 706 aaPredicted RBP22.36■■□□□ 1.17
COL27A1-207ENST00000494090 EIF3JO75822 258 aaKnown RBP22.36■■□□□ 1.17
COL27A1-207ENST00000494090 ANO10Q9NW15 660 aa22.36■■□□□ 1.17
COL27A1-207ENST00000494090 ZPR1O75312 459 aa22.35■■□□□ 1.17
COL27A1-207ENST00000494090 TNIP1Q15025 636 aa22.35■■□□□ 1.17
COL27A1-207ENST00000494090 NEFHP12036 1026 aa22.35■■□□□ 1.17
COL27A1-207ENST00000494090 TRIM21P19474 475 aaKnown RBP22.35■■□□□ 1.17
COL27A1-207ENST00000494090 DNAI2Q9GZS0 605 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 TTC21BQ7Z4L5 1316 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 ABCF2Q9UG63 623 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 ANKRD36BQ8N2N9 1353 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 PPP1R12BO60237 982 aaPredicted RBP22.34■■□□□ 1.17
COL27A1-207ENST00000494090 BICDL1Q6ZP65 573 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 SEC63Q9UGP8 760 aaKnown RBP22.34■■□□□ 1.17
COL27A1-207ENST00000494090 MYD88Q99836 296 aa22.34■■□□□ 1.17
COL27A1-207ENST00000494090 FLIIQ13045 1269 aa22.33■■□□□ 1.17
COL27A1-207ENST00000494090 PHAXQ9H814 394 aaKnown RBP22.33■■□□□ 1.17
COL27A1-207ENST00000494090 XPCQ01831 940 aaPredicted RBP22.33■■□□□ 1.17
COL27A1-207ENST00000494090 HDAC1Q13547 482 aaPredicted RBP22.33■■□□□ 1.17
COL27A1-207ENST00000494090 CFAP100Q494V2 611 aa22.33■■□□□ 1.17
COL27A1-207ENST00000494090 HYPKQ9NX55 129 aa22.33■■□□□ 1.16
COL27A1-207ENST00000494090 DBF4Q9UBU7 674 aaPredicted RBP22.33■■□□□ 1.16
COL27A1-207ENST00000494090 RALGAPBQ86X10 1494 aa22.32■■□□□ 1.16
COL27A1-207ENST00000494090 SEPT7Q16181 437 aaKnown RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms