RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SYTL4Q96C24 671 aaPredicted RBP25.22■■□□□ 1.63
USP39-218ENST00000493829 ACSBG1Q96GR2 724 aa25.22■■□□□ 1.63
USP39-218ENST00000493829 MYH16Q9H6N6 1097 aa25.22■■□□□ 1.63
USP39-218ENST00000493829 MBIPQ9NS73 344 aa25.22■■□□□ 1.63
USP39-218ENST00000493829 ITGB4P16144 1822 aa25.21■■□□□ 1.63
USP39-218ENST00000493829 NFATC2IPQ8NCF5 419 aa25.21■■□□□ 1.63
USP39-218ENST00000493829 CFAP44Q96MT7 982 aa25.21■■□□□ 1.63
USP39-218ENST00000493829 TSPYL4Q9UJ04 414 aa25.21■■□□□ 1.63
USP39-218ENST00000493829 TAF7Q15545 349 aaPredicted RBP25.2■■□□□ 1.63
USP39-218ENST00000493829 ZNF853P0CG23 659 aa25.2■■□□□ 1.62
USP39-218ENST00000493829 DUSP27Q5VZP5 1158 aa25.2■■□□□ 1.62
USP39-218ENST00000493829 KDM3BQ7LBC6 1761 aa25.2■■□□□ 1.62
USP39-218ENST00000493829 KRT27Q7Z3Y8 459 aa25.19■■□□□ 1.62
USP39-218ENST00000493829 BTBD11A6QL63 1104 aa25.18■■□□□ 1.62
USP39-218ENST00000493829 ERVV-2B6SEH9 535 aa25.18■■□□□ 1.62
USP39-218ENST00000493829 CHL1O00533 1208 aa25.17■■□□□ 1.62
USP39-218ENST00000493829 TMOD3Q9NYL9 352 aa25.17■■□□□ 1.62
USP39-218ENST00000493829 CENPBP07199 599 aaPredicted RBP25.17■■□□□ 1.62
USP39-218ENST00000493829 PRIM1P49642 420 aaKnown RBP25.17■■□□□ 1.62
USP39-218ENST00000493829 TRMT2AQ8IZ69 625 aaKnown RBP25.17■■□□□ 1.62
USP39-218ENST00000493829 KAT6BQ8WYB5 2073 aa25.16■■□□□ 1.62
USP39-218ENST00000493829 KCNQ3O43525 872 aa25.15■■□□□ 1.62
USP39-218ENST00000493829 SLC39A6Q13433 755 aa25.15■■□□□ 1.62
USP39-218ENST00000493829 PAPPAQ13219 1627 aa25.14■■□□□ 1.62
USP39-218ENST00000493829 EXOSC9Q06265 439 aaKnown RBP25.13■■□□□ 1.61
USP39-218ENST00000493829 KRT24Q2M2I5 525 aa25.13■■□□□ 1.61
USP39-218ENST00000493829 NHSQ6T4R5 1651 aa25.13■■□□□ 1.61
USP39-218ENST00000493829 KCNQ2O43526 872 aa25.13■■□□□ 1.61
USP39-218ENST00000493829 PIGBQ92521 554 aa25.13■■□□□ 1.61
USP39-218ENST00000493829 BCL9O00512 1426 aa25.12■■□□□ 1.61
USP39-218ENST00000493829 SBF2Q86WG5 1849 aa25.11■■□□□ 1.61
USP39-218ENST00000493829 ELL2O00472 640 aaPredicted RBP25.1■■□□□ 1.61
USP39-218ENST00000493829 PTF1AQ7RTS3 328 aa25.1■■□□□ 1.61
USP39-218ENST00000493829 ZNF790Q6PG37 636 aa25.09■■□□□ 1.61
USP39-218ENST00000493829 TTC5Q8N0Z6 440 aa25.09■■□□□ 1.61
USP39-218ENST00000493829 BABAM1Q9NWV8 329 aa25.09■■□□□ 1.61
USP39-218ENST00000493829 C8orf58Q8NAV2 365 aa25.08■■□□□ 1.61
USP39-218ENST00000493829 UBR2Q8IWV8 1755 aa25.08■■□□□ 1.6
USP39-218ENST00000493829 TSPYL6Q8N831 410 aa25.07■■□□□ 1.6
USP39-218ENST00000493829 ASAP1Q9ULH1 1129 aa25.07■■□□□ 1.6
USP39-218ENST00000493829 BTAF1O14981 1849 aa25.07■■□□□ 1.6
USP39-218ENST00000493829 KCPQ6ZWJ8 1503 aa25.06■■□□□ 1.6
USP39-218ENST00000493829 EIF4A1P60842 406 aaKnown RBP25.06■■□□□ 1.6
USP39-218ENST00000493829 FAM196AQ6ZSG2 479 aa25.06■■□□□ 1.6
USP39-218ENST00000493829 C5P01031 1676 aa25.05■■□□□ 1.6
USP39-218ENST00000493829 EP400Q96L91 3159 aa25.05■■□□□ 1.6
USP39-218ENST00000493829 ATG3Q9NT62 314 aa25.04■■□□□ 1.6
USP39-218ENST00000493829 PTCD1O75127 700 aaKnown RBP25.04■■□□□ 1.6
USP39-218ENST00000493829 TWISTNBQ3B726 338 aaPredicted RBP25.04■■□□□ 1.6
USP39-218ENST00000493829 ZNF496Q96IT1 587 aaPredicted RBP25.04■■□□□ 1.6
USP39-218ENST00000493829 PRAMEF22A3QJZ6 481 aa25.01■■□□□ 1.59
USP39-218ENST00000493829 TRIM37O94972 964 aa25.01■■□□□ 1.59
USP39-218ENST00000493829 FMNL2Q96PY5 1086 aa25.01■■□□□ 1.59
USP39-218ENST00000493829 RBM42Q9BTD8 480 aaKnown RBP25.01■■□□□ 1.59
USP39-218ENST00000493829 NECTIN2Q92692 538 aa25■■□□□ 1.59
USP39-218ENST00000493829 PALLDQ8WX93 1383 aa24.99■■□□□ 1.59
USP39-218ENST00000493829 TCERG1O14776 1098 aaKnown RBP24.99■■□□□ 1.59
USP39-218ENST00000493829 RCAN3Q9UKA8 241 aa24.99■■□□□ 1.59
USP39-218ENST00000493829 BCL2L13Q9BXK5 485 aa24.98■■□□□ 1.59
USP39-218ENST00000493829 VAMP4O75379 141 aa24.97■■□□□ 1.59
USP39-218ENST00000493829 HEG1Q9ULI3 1381 aa24.97■■□□□ 1.59
USP39-218ENST00000493829 LAMB4A4D0S4 1761 aa24.97■■□□□ 1.59
USP39-218ENST00000493829 BCL11BQ9C0K0 894 aaPredicted RBP24.97■■□□□ 1.59
USP39-218ENST00000493829 GIGYF1O75420 1035 aaPredicted RBP24.96■■□□□ 1.59
USP39-218ENST00000493829 EIF2S2P20042 333 aaKnown RBP24.95■■□□□ 1.58
USP39-218ENST00000493829 TJP1Q07157 1748 aa24.94■■□□□ 1.58
USP39-218ENST00000493829 TNS1Q9HBL0 1735 aaKnown RBP24.94■■□□□ 1.58
USP39-218ENST00000493829 SNRPA1P09661 255 aaKnown RBP24.93■■□□□ 1.58
USP39-218ENST00000493829 CT47B1P0C2W7 299 aaPredicted RBP24.93■■□□□ 1.58
USP39-218ENST00000493829 HDGFL1Q5TGJ6 251 aa24.93■■□□□ 1.58
USP39-218ENST00000493829 SMARCC1Q92922 1105 aaPredicted RBP24.93■■□□□ 1.58
USP39-218ENST00000493829 BCAR3O75815 825 aa24.92■■□□□ 1.58
USP39-218ENST00000493829 RARSP54136 660 aaKnown RBP24.92■■□□□ 1.58
USP39-218ENST00000493829 SLC4A9Q96Q91 983 aa24.92■■□□□ 1.58
USP39-218ENST00000493829 SMC4Q9NTJ3 1288 aa24.92■■□□□ 1.58
USP39-218ENST00000493829 SSH1Q8WYL5 1049 aa24.91■■□□□ 1.58
USP39-218ENST00000493829 KCNQ4P56696 695 aa24.91■■□□□ 1.58
USP39-218ENST00000493829 LY75O60449 1722 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 LOC102724428A0A0B4J2F2 783 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 HOXB7P09629 217 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 SIK1P57059 783 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 DNAJC10Q8IXB1 793 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 USP16Q9Y5T5 823 aa24.9■■□□□ 1.58
USP39-218ENST00000493829 ATP6V1AP38606 617 aa24.88■■□□□ 1.57
USP39-218ENST00000493829 SUPT16HQ9Y5B9 1047 aaKnown RBP24.88■■□□□ 1.57
USP39-218ENST00000493829 SOS1Q07889 1333 aaPredicted RBP24.88■■□□□ 1.57
USP39-218ENST00000493829 PIP4K2AP48426 406 aaPredicted RBP24.87■■□□□ 1.57
USP39-218ENST00000493829 CCDC30Q5VVM6 783 aa24.87■■□□□ 1.57
USP39-218ENST00000493829 CHPF2Q9P2E5 772 aa24.87■■□□□ 1.57
USP39-218ENST00000493829 APBA3O96018 575 aa24.86■■□□□ 1.57
USP39-218ENST00000493829 ANXA1P04083 346 aa24.86■■□□□ 1.57
USP39-218ENST00000493829 VSIG10Q8N0Z9 540 aa24.86■■□□□ 1.57
USP39-218ENST00000493829 STK31Q9BXU1 1019 aa24.86■■□□□ 1.57
USP39-218ENST00000493829 ITPK1Q13572 414 aa24.85■■□□□ 1.57
USP39-218ENST00000493829 ALDH1L2Q3SY69 923 aa24.85■■□□□ 1.57
USP39-218ENST00000493829 ZNF428Q96B54 188 aa24.85■■□□□ 1.57
USP39-218ENST00000493829 CICQ96RK0 1608 aaPredicted RBP24.85■■□□□ 1.57
USP39-218ENST00000493829 FRAT1Q92837 279 aaPredicted RBP24.85■■□□□ 1.57
USP39-218ENST00000493829 CCNL1Q9UK58 526 aaPredicted RBP24.85■■□□□ 1.57
USP39-218ENST00000493829 COL5A3P25940 1745 aaPredicted RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 318.6 ms