RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SBF2Q86WG5 1849 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 RGPD8O14715 1765 aaPredicted RBP9.39□□□□□ -0.91
VPS52-219ENST00000493379 CD163L1Q9NR16 1453 aa9.39□□□□□ -0.91
VPS52-219ENST00000493379 PLSCR1O15162 318 aa9.38□□□□□ -0.91
VPS52-219ENST00000493379 ATMINO43313 823 aaPredicted RBP9.38□□□□□ -0.91
VPS52-219ENST00000493379 MLLT3P42568 568 aaPredicted RBP9.38□□□□□ -0.91
VPS52-219ENST00000493379 FOXK1P85037 733 aa9.38□□□□□ -0.91
VPS52-219ENST00000493379 ASTLQ6HA08 431 aaPredicted RBP9.38□□□□□ -0.91
VPS52-219ENST00000493379 TMEM121BQ9BXQ6 578 aaPredicted RBP9.38□□□□□ -0.91
VPS52-219ENST00000493379 TNRC18O15417 2968 aaPredicted RBP9.38□□□□□ -0.91
VPS52-219ENST00000493379 USP6P35125 1406 aa9.38□□□□□ -0.91
VPS52-219ENST00000493379 PDE4DIPQ5VU43 2346 aa9.37□□□□□ -0.91
VPS52-219ENST00000493379 C11orf95C9JLR9 678 aaPredicted RBP9.37□□□□□ -0.91
VPS52-219ENST00000493379 TMC2Q8TDI7 906 aa9.37□□□□□ -0.91
VPS52-219ENST00000493379 OCEL1Q9H607 264 aa9.37□□□□□ -0.91
VPS52-219ENST00000493379 TTC21BQ7Z4L5 1316 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 TTC21AQ8NDW8 1320 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 DPYSL4O14531 572 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 ZEB1P37275 1124 aaPredicted RBP9.36□□□□□ -0.91
VPS52-219ENST00000493379 RBM26Q5T8P6 1007 aaKnown RBP9.36□□□□□ -0.91
VPS52-219ENST00000493379 IER5LQ5T953 404 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 TERF2IPQ9NYB0 399 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 ITSN1Q15811 1721 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 TRPM3Q9HCF6 1732 aaPredicted RBP9.36□□□□□ -0.91
VPS52-219ENST00000493379 USP31Q70CQ4 1352 aa9.36□□□□□ -0.91
VPS52-219ENST00000493379 USP19O94966 1318 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 PDIA6Q15084 440 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 BARGINQ6ZT62 677 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 STRN4Q9NRL3 753 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 BOLA1Q9Y3E2 137 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 ANKRD36BQ8N2N9 1353 aa9.35□□□□□ -0.91
VPS52-219ENST00000493379 PEAK1Q9H792 1746 aa9.34□□□□□ -0.91
VPS52-219ENST00000493379 SPDYE16A6NNV3 312 aaPredicted RBP9.34□□□□□ -0.91
VPS52-219ENST00000493379 HDGFL2Q7Z4V5 671 aaPredicted RBP9.34□□□□□ -0.91
VPS52-219ENST00000493379 NLRP13Q86W25 1043 aa9.34□□□□□ -0.91
VPS52-219ENST00000493379 NMRK2Q9NPI5 230 aa9.34□□□□□ -0.91
VPS52-219ENST00000493379 ALS2Q96Q42 1657 aa9.34□□□□□ -0.91
VPS52-219ENST00000493379 EDC4Q6P2E9 1401 aaKnown RBP9.33□□□□□ -0.92
VPS52-219ENST00000493379 NEUROD2Q15784 382 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 TXNRD1Q16881 649 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 ABTB2Q8N961 1025 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 ABHD8Q96I13 439 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 CARD14Q9BXL6 1004 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 A0A1W2PP64 1363 aa9.33□□□□□ -0.92
VPS52-219ENST00000493379 KTN1Q86UP2 1357 aaKnown RBP9.33□□□□□ -0.92
VPS52-219ENST00000493379 C2orf72A6NCS6 295 aa9.32□□□□□ -0.92
VPS52-219ENST00000493379 GCP02774 474 aa9.32□□□□□ -0.92
VPS52-219ENST00000493379 PLPP6Q8IY26 295 aa9.32□□□□□ -0.92
VPS52-219ENST00000493379 TMC1Q8TDI8 760 aa9.32□□□□□ -0.92
VPS52-219ENST00000493379 CPDO75976 1380 aa9.32□□□□□ -0.92
VPS52-219ENST00000493379 KIF7Q2M1P5 1343 aa9.31□□□□□ -0.92
VPS52-219ENST00000493379 FYB1O15117 783 aa9.31□□□□□ -0.92
VPS52-219ENST00000493379 PER1O15534 1290 aaPredicted RBP9.31□□□□□ -0.92
VPS52-219ENST00000493379 GPIHBP1Q8IV16 184 aa9.31□□□□□ -0.92
VPS52-219ENST00000493379 FOXN1O15353 648 aa9.3□□□□□ -0.92
VPS52-219ENST00000493379 CHRNA2Q15822 529 aa9.3□□□□□ -0.92
VPS52-219ENST00000493379 KCNH5Q8NCM2 988 aa9.3□□□□□ -0.92
VPS52-219ENST00000493379 COL24A1Q17RW2 1714 aa9.3□□□□□ -0.92
VPS52-219ENST00000493379 AKAP12Q02952 1782 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 G3V3G9 751 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 PLCG2P16885 1265 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 POLD1P28340 1107 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 RGS19P49795 217 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 ZNF827Q17R98 1081 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 ARHGEF25Q86VW2 580 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 RBM46Q8TBY0 533 aaKnown RBP9.29□□□□□ -0.92
VPS52-219ENST00000493379 SLIT3O75094 1523 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 WASHC2AQ641Q2 1341 aa9.29□□□□□ -0.92
VPS52-219ENST00000493379 CCDC7Q96M83 1385 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 CCDC85CA6NKD9 419 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 NME9Q86XW9 330 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 PANK3Q9H999 370 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 PRDM11Q9NQV5 511 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 OVOS2A0A0G2JMS6 1433 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 OVOS2A0A0J9YW53 1432 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 OVOS2Q6IE36 1432 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 MON2Q7Z3U7 1717 aa9.28□□□□□ -0.92
VPS52-219ENST00000493379 PAPPAQ13219 1627 aa9.27□□□□□ -0.92
VPS52-219ENST00000493379 USP54Q70EL1 1684 aa9.27□□□□□ -0.93
VPS52-219ENST00000493379 L3MBTL3Q96JM7 780 aaPredicted RBP9.27□□□□□ -0.93
VPS52-219ENST00000493379 PARP4Q9UKK3 1724 aaKnown RBP9.27□□□□□ -0.93
VPS52-219ENST00000493379 CRYBG1Q9Y4K1 1723 aa9.27□□□□□ -0.93
VPS52-219ENST00000493379 PHRF1Q9P1Y6 1649 aaKnown RBP9.27□□□□□ -0.93
VPS52-219ENST00000493379 NPC1L1Q9UHC9 1359 aa9.26□□□□□ -0.93
VPS52-219ENST00000493379 NUTM2GQ5VZR2 741 aa9.26□□□□□ -0.93
VPS52-219ENST00000493379 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS52-219ENST00000493379 AK7Q96M32 723 aa9.26□□□□□ -0.93
VPS52-219ENST00000493379 PIK3C2AO00443 1686 aa9.26□□□□□ -0.93
VPS52-219ENST00000493379 KIAA0232Q92628 1395 aa9.25□□□□□ -0.93
VPS52-219ENST00000493379 GABBR2O75899 941 aa9.25□□□□□ -0.93
VPS52-219ENST00000493379 LARP1Q6PKG0 1096 aaKnown RBP9.25□□□□□ -0.93
VPS52-219ENST00000493379 ERICH6Q7L0X2 663 aa9.25□□□□□ -0.93
VPS52-219ENST00000493379 CGNL1Q0VF96 1302 aa9.25□□□□□ -0.93
VPS52-219ENST00000493379 TUBGCP6Q96RT7 1819 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 ZC3H6P61129 1189 aaKnown RBP9.24□□□□□ -0.93
VPS52-219ENST00000493379 MAP3K9P80192 1104 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 FSTL1Q12841 308 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 TMEM92Q6UXU6 159 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 KRI1Q8N9T8 703 aaKnown RBP9.24□□□□□ -0.93
VPS52-219ENST00000493379 COG3Q96JB2 828 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms