RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 TMOD3Q9NYL9 352 aa12.22□□□□□ -0.45
HDAC3-211ENST00000491581 SCN11AQ9UI33 1791 aa12.22□□□□□ -0.45
HDAC3-211ENST00000491581 C4AP0C0L4 1744 aa12.22□□□□□ -0.45
HDAC3-211ENST00000491581 TJP1Q07157 1748 aa12.22□□□□□ -0.45
HDAC3-211ENST00000491581 MYH14Q7Z406 1995 aaKnown RBP12.21□□□□□ -0.45
HDAC3-211ENST00000491581 LOC102724428A0A0B4J2F2 783 aa12.21□□□□□ -0.45
HDAC3-211ENST00000491581 HMOX1P09601 288 aa12.21□□□□□ -0.45
HDAC3-211ENST00000491581 SIK1P57059 783 aa12.21□□□□□ -0.45
HDAC3-211ENST00000491581 SULT6B1Q6IMI4 303 aa12.21□□□□□ -0.45
HDAC3-211ENST00000491581 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.2□□□□□ -0.46
HDAC3-211ENST00000491581 POLD1P28340 1107 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 IL13P35225 146 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 ATP6V1AP38606 617 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 GPR162Q16538 588 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 ZNF530Q6P9A1 599 aaPredicted RBP12.2□□□□□ -0.46
HDAC3-211ENST00000491581 SLC16A10Q8TF71 515 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 AK7Q96M32 723 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 KNSTRNQ9Y448 316 aa12.2□□□□□ -0.46
HDAC3-211ENST00000491581 N4BP2Q86UW6 1770 aaPredicted RBP12.2□□□□□ -0.46
HDAC3-211ENST00000491581 KDRP35968 1356 aa12.19□□□□□ -0.46
HDAC3-211ENST00000491581 MAP3K5Q99683 1374 aa12.19□□□□□ -0.46
HDAC3-211ENST00000491581 PER1O15534 1290 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-211ENST00000491581 MTHFSP49914 203 aa12.19□□□□□ -0.46
HDAC3-211ENST00000491581 ZNF784Q8NCA9 323 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-211ENST00000491581 RBM42Q9BTD8 480 aaKnown RBP12.19□□□□□ -0.46
HDAC3-211ENST00000491581 RNF216Q9NWF9 866 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-211ENST00000491581 GOLGB1Q14789 3259 aaKnown RBP12.19□□□□□ -0.46
HDAC3-211ENST00000491581 KIAA1551Q9HCM1 1747 aa12.19□□□□□ -0.46
HDAC3-211ENST00000491581 GNPATO15228 680 aa12.18□□□□□ -0.46
HDAC3-211ENST00000491581 LGR6Q9HBX8 967 aa12.18□□□□□ -0.46
HDAC3-211ENST00000491581 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.18□□□□□ -0.46
HDAC3-211ENST00000491581 PTCD1O75127 700 aaKnown RBP12.17□□□□□ -0.46
HDAC3-211ENST00000491581 SMARCC1Q92922 1105 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-211ENST00000491581 COL3A1P02461 1466 aaPredicted RBP12.16□□□□□ -0.46
HDAC3-211ENST00000491581 PLEKHO1Q53GL0 409 aaPredicted RBP12.16□□□□□ -0.46
HDAC3-211ENST00000491581 NFATC2IPQ8NCF5 419 aa12.16□□□□□ -0.46
HDAC3-211ENST00000491581 CNKSR2Q8WXI2 1034 aa12.16□□□□□ -0.46
HDAC3-211ENST00000491581 CABP4P57796 275 aa12.15□□□□□ -0.46
HDAC3-211ENST00000491581 ZNF831Q5JPB2 1677 aa12.15□□□□□ -0.46
HDAC3-211ENST00000491581 ADAMTS7Q9UKP4 1686 aa12.15□□□□□ -0.46
HDAC3-211ENST00000491581 CICQ96RK0 1608 aaPredicted RBP12.15□□□□□ -0.47
HDAC3-211ENST00000491581 SLC39A6Q13433 755 aa12.14□□□□□ -0.47
HDAC3-211ENST00000491581 DCAF5Q96JK2 942 aa12.14□□□□□ -0.47
HDAC3-211ENST00000491581 MTHFSDQ2M296 383 aaKnown RBP12.13□□□□□ -0.47
HDAC3-211ENST00000491581 SRP68Q9UHB9 627 aaKnown RBP12.13□□□□□ -0.47
HDAC3-211ENST00000491581 KIF13BQ9NQT8 1826 aa12.12□□□□□ -0.47
HDAC3-211ENST00000491581 ERVV-2B6SEH9 535 aa12.12□□□□□ -0.47
HDAC3-211ENST00000491581 SSFA2P28290 1259 aa12.12□□□□□ -0.47
HDAC3-211ENST00000491581 C1orf141Q5JVX7 400 aa12.12□□□□□ -0.47
HDAC3-211ENST00000491581 ARHGEF1Q92888 912 aaKnown RBP12.12□□□□□ -0.47
HDAC3-211ENST00000491581 KCPQ6ZWJ8 1503 aa12.11□□□□□ -0.47
HDAC3-211ENST00000491581 SIPA1L3O60292 1781 aaPredicted RBP12.11□□□□□ -0.47
HDAC3-211ENST00000491581 MMP10P09238 476 aa12.11□□□□□ -0.47
HDAC3-211ENST00000491581 UBR2Q8IWV8 1755 aa12.1□□□□□ -0.47
HDAC3-211ENST00000491581 U2SURPO15042 1029 aaKnown RBP12.1□□□□□ -0.47
HDAC3-211ENST00000491581 DIAPH1O60610 1272 aaKnown RBP12.1□□□□□ -0.47
HDAC3-211ENST00000491581 AMOTQ4VCS5 1084 aa12.1□□□□□ -0.47
HDAC3-211ENST00000491581 DNAJC10Q8IXB1 793 aa12.1□□□□□ -0.47
HDAC3-211ENST00000491581 BRCA1P38398 1863 aaKnown RBP12.1□□□□□ -0.47
HDAC3-211ENST00000491581 PXDNLA1KZ92 1463 aa12.09□□□□□ -0.47
HDAC3-211ENST00000491581 MRC1P22897 1456 aa12.09□□□□□ -0.47
HDAC3-211ENST00000491581 RNMTO43148 476 aaKnown RBP12.09□□□□□ -0.47
HDAC3-211ENST00000491581 GYS1P13807 737 aa12.09□□□□□ -0.47
HDAC3-211ENST00000491581 CRKLP46109 303 aaKnown RBP12.09□□□□□ -0.47
HDAC3-211ENST00000491581 FLAD1Q8NFF5 587 aa12.09□□□□□ -0.47
HDAC3-211ENST00000491581 RTCBQ9Y3I0 505 aaKnown RBP12.09□□□□□ -0.47
HDAC3-211ENST00000491581 A0A0G2JLW4 131 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 HSP90AB1P08238 724 aaKnown RBP12.08□□□□□ -0.48
HDAC3-211ENST00000491581 FKBP8Q14318 412 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 AKAP4Q5JQC9 854 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 TRAPPC3LQ5T215 181 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 INTS5Q6P9B9 1019 aaKnown RBP12.08□□□□□ -0.48
HDAC3-211ENST00000491581 ZNF526Q8TF50 670 aaPredicted RBP12.08□□□□□ -0.48
HDAC3-211ENST00000491581 SLC52A2Q9HAB3 445 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 CD2APQ9Y5K6 639 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 AFDNP55196 1824 aaKnown RBP12.08□□□□□ -0.48
HDAC3-211ENST00000491581 CNTNAP4Q9C0A0 1308 aa12.08□□□□□ -0.48
HDAC3-211ENST00000491581 RPS6KA4O75676 772 aa12.07□□□□□ -0.48
HDAC3-211ENST00000491581 DDR1Q08345 913 aa12.07□□□□□ -0.48
HDAC3-211ENST00000491581 PHACTR3Q96KR7 559 aa12.07□□□□□ -0.48
HDAC3-211ENST00000491581 KCNQ3O43525 872 aa12.06□□□□□ -0.48
HDAC3-211ENST00000491581 IL17REQ8NFR9 667 aa12.06□□□□□ -0.48
HDAC3-211ENST00000491581 C10orf71Q711Q0 1435 aa12.05□□□□□ -0.48
HDAC3-211ENST00000491581 ATP10DQ9P241 1426 aa12.05□□□□□ -0.48
HDAC3-211ENST00000491581 RFC4P35249 363 aa12.05□□□□□ -0.48
HDAC3-211ENST00000491581 RC3H1Q5TC82 1133 aaKnown RBP12.05□□□□□ -0.48
HDAC3-211ENST00000491581 ZBTB1Q9Y2K1 713 aa12.05□□□□□ -0.48
HDAC3-211ENST00000491581 PLEKHG2Q9H7P9 1386 aa12.05□□□□□ -0.48
HDAC3-211ENST00000491581 DPEP1P16444 411 aa12.04□□□□□ -0.48
HDAC3-211ENST00000491581 PIP4K2AP48426 406 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-211ENST00000491581 USP42Q9H9J4 1324 aaKnown RBP12.04□□□□□ -0.48
HDAC3-211ENST00000491581 DLG5Q8TDM6 1919 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 PRAMEF22A3QJZ6 481 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 CYP19A1P11511 503 aaPredicted RBP12.03□□□□□ -0.48
HDAC3-211ENST00000491581 KCNA3P22001 575 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 PPP2R1AP30153 589 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 CHRNA5P30532 468 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 PRKAR2BP31323 418 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 DCTN1Q14203 1278 aa12.03□□□□□ -0.48
HDAC3-211ENST00000491581 USPL1Q5W0Q7 1092 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms