RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 DCAF8L1A6NGE4 600 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 HMOX1P09601 288 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 POLD1P28340 1107 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 AKAP4Q5JQC9 854 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 AK7Q96M32 723 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 CFAP53Q96M91 514 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 ARXQ96QS3 562 aa14.14□□□□□ -0.15
SCAMP4-208ENST00000489554 MSH5O43196 834 aa14.13□□□□□ -0.15
SCAMP4-208ENST00000489554 ATP6V1AP38606 617 aa14.13□□□□□ -0.15
SCAMP4-208ENST00000489554 COL23A1Q86Y22 540 aaPredicted RBP14.13□□□□□ -0.15
SCAMP4-208ENST00000489554 TUBGCP6Q96RT7 1819 aa14.13□□□□□ -0.15
SCAMP4-208ENST00000489554 CCER2I3L3R5 266 aa14.12□□□□□ -0.15
SCAMP4-208ENST00000489554 FHDC1Q9C0D6 1143 aaPredicted RBP14.12□□□□□ -0.15
SCAMP4-208ENST00000489554 C4BP0C0L5 1744 aa14.12□□□□□ -0.15
SCAMP4-208ENST00000489554 MAP3K5Q99683 1374 aa14.11□□□□□ -0.15
SCAMP4-208ENST00000489554 TAF1LQ8IZX4 1826 aa14.11□□□□□ -0.15
SCAMP4-208ENST00000489554 U2SURPO15042 1029 aaKnown RBP14.11□□□□□ -0.15
SCAMP4-208ENST00000489554 LINC00116Q8NCU8 138 aa14.11□□□□□ -0.15
SCAMP4-208ENST00000489554 SYT17Q9BSW7 474 aa14.11□□□□□ -0.15
SCAMP4-208ENST00000489554 SSFA2P28290 1259 aa14.1□□□□□ -0.15
SCAMP4-208ENST00000489554 ITPK1Q13572 414 aa14.1□□□□□ -0.15
SCAMP4-208ENST00000489554 NFATC2IPQ8NCF5 419 aa14.1□□□□□ -0.15
SCAMP4-208ENST00000489554 RBM42Q9BTD8 480 aaKnown RBP14.1□□□□□ -0.15
SCAMP4-208ENST00000489554 COL24A1Q17RW2 1714 aa14.1□□□□□ -0.15
SCAMP4-208ENST00000489554 MTHFSDQ2M296 383 aaKnown RBP14.09□□□□□ -0.15
SCAMP4-208ENST00000489554 NUDCQ9Y266 331 aa14.09□□□□□ -0.15
SCAMP4-208ENST00000489554 ZNF831Q5JPB2 1677 aa14.08□□□□□ -0.16
SCAMP4-208ENST00000489554 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.08□□□□□ -0.16
SCAMP4-208ENST00000489554 GNPATO15228 680 aa14.08□□□□□ -0.16
SCAMP4-208ENST00000489554 SLC52A2Q9HAB3 445 aa14.08□□□□□ -0.16
SCAMP4-208ENST00000489554 RNMTO43148 476 aaKnown RBP14.07□□□□□ -0.16
SCAMP4-208ENST00000489554 PHF14O94880 888 aa14.07□□□□□ -0.16
SCAMP4-208ENST00000489554 RC3H1Q5TC82 1133 aaKnown RBP14.07□□□□□ -0.16
SCAMP4-208ENST00000489554 GAS2L2Q8NHY3 880 aa14.07□□□□□ -0.16
SCAMP4-208ENST00000489554 SLC4A9Q96Q91 983 aa14.07□□□□□ -0.16
SCAMP4-208ENST00000489554 SCN11AQ9UI33 1791 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 MRC1P22897 1456 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 PTCD1O75127 700 aaKnown RBP14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 MSL1Q68DK7 614 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 AMIGO3Q86WK7 504 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 LGR6Q9HBX8 967 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 CNTNAP4Q9C0A0 1308 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 UBR3Q6ZT12 1888 aa14.06□□□□□ -0.16
SCAMP4-208ENST00000489554 RTCBQ9Y3I0 505 aaKnown RBP14.05□□□□□ -0.16
SCAMP4-208ENST00000489554 GNAT3A8MTJ3 354 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 ADRA2BP18089 450 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 PRKAR2BP31323 418 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 KLHL34Q8N239 644 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 RSPH6AQ9H0K4 717 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 MRS2Q9HD23 443 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 ADAMTS7Q9UKP4 1686 aa14.04□□□□□ -0.16
SCAMP4-208ENST00000489554 U2AF1L5P0DN76 240 aaPredicted RBP14.03□□□□□ -0.16
SCAMP4-208ENST00000489554 U2AF1Q01081 240 aaKnown RBP eCLIP14.03□□□□□ -0.16
SCAMP4-208ENST00000489554 TRAPPC3LQ5T215 181 aa14.03□□□□□ -0.16
SCAMP4-208ENST00000489554 PNISRQ8TF01 805 aaKnown RBP14.03□□□□□ -0.16
SCAMP4-208ENST00000489554 CICQ96RK0 1608 aaPredicted RBP14.02□□□□□ -0.16
SCAMP4-208ENST00000489554 RPS6KA4O75676 772 aa14.02□□□□□ -0.17
SCAMP4-208ENST00000489554 FCHSD2O94868 740 aa14.02□□□□□ -0.17
SCAMP4-208ENST00000489554 SMIM5Q71RC9 77 aa14.02□□□□□ -0.17
SCAMP4-208ENST00000489554 COL5A3P25940 1745 aaPredicted RBP14.01□□□□□ -0.17
SCAMP4-208ENST00000489554 CRKLP46109 303 aaKnown RBP14.01□□□□□ -0.17
SCAMP4-208ENST00000489554 TEFQ10587 303 aa14.01□□□□□ -0.17
SCAMP4-208ENST00000489554 CD2APQ9Y5K6 639 aa14.01□□□□□ -0.17
SCAMP4-208ENST00000489554 YY1P25490 414 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 SLC39A6Q13433 755 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 TTC5Q8N0Z6 440 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 VSIG10Q8N0Z9 540 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 IL17REQ8NFR9 667 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 PHACTR3Q96KR7 559 aa14□□□□□ -0.17
SCAMP4-208ENST00000489554 CEMIPQ8WUJ3 1361 aa13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 RFC4P35249 363 aa13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 NLGN1Q8N2Q7 840 aa13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 NLGN2Q8NFZ4 835 aa13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 ARHGEF1Q92888 912 aaKnown RBP13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 KCPQ6ZWJ8 1503 aa13.99□□□□□ -0.17
SCAMP4-208ENST00000489554 TJP1Q07157 1748 aa13.98□□□□□ -0.17
SCAMP4-208ENST00000489554 NEFMP07197 916 aa13.98□□□□□ -0.17
SCAMP4-208ENST00000489554 GPR162Q16538 588 aa13.98□□□□□ -0.17
SCAMP4-208ENST00000489554 DNAJC10Q8IXB1 793 aa13.98□□□□□ -0.17
SCAMP4-208ENST00000489554 CCDC87Q9NVE4 849 aa13.98□□□□□ -0.17
SCAMP4-208ENST00000489554 INTS5Q6P9B9 1019 aaKnown RBP13.97□□□□□ -0.17
SCAMP4-208ENST00000489554 RTF1Q92541 710 aaKnown RBP13.97□□□□□ -0.17
SCAMP4-208ENST00000489554 HTATSF1O43719 755 aaKnown RBP13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 MMP10P09238 476 aa13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 CYP19A1P11511 503 aaPredicted RBP13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 GYS1P13807 737 aa13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 ZNF790Q6PG37 636 aa13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 VIRMAQ69YN4 1812 aaKnown RBP13.96□□□□□ -0.17
SCAMP4-208ENST00000489554 MYH14Q7Z406 1995 aaKnown RBP13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 STARD3NLO95772 234 aa13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 PELP1Q8IZL8 1130 aaKnown RBP13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 TEX13AQ9BXU3 409 aaPredicted RBP13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 PNNQ9H307 717 aaKnown RBP13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 ADAMTS8Q9UP79 889 aa13.95□□□□□ -0.18
SCAMP4-208ENST00000489554 SOS1Q07889 1333 aaPredicted RBP13.94□□□□□ -0.18
SCAMP4-208ENST00000489554 USP42Q9H9J4 1324 aaKnown RBP13.94□□□□□ -0.18
SCAMP4-208ENST00000489554 UBR2Q8IWV8 1755 aa13.94□□□□□ -0.18
SCAMP4-208ENST00000489554 BTBD11A6QL63 1104 aa13.94□□□□□ -0.18
SCAMP4-208ENST00000489554 ZNF496Q96IT1 587 aaPredicted RBP13.94□□□□□ -0.18
SCAMP4-208ENST00000489554 FMNL2Q96PY5 1086 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms