RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 RAPGEF3O95398 923 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 WAPLQ7Z5K2 1190 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 TMX1Q9H3N1 280 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 PLEKHH2Q8IVE3 1493 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 SFPQP23246 707 aaKnown RBP eCLIP20.61■□□□□ 0.89
NPHP4-209ENST00000489180 ALDH1L2Q3SY69 923 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 KLHL10Q6JEL2 608 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 USHBP1Q8N6Y0 703 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 CCDC8Q9H0W5 538 aaPredicted RBP20.61■□□□□ 0.89
NPHP4-209ENST00000489180 CLIP2Q9UDT6 1046 aa20.61■□□□□ 0.89
NPHP4-209ENST00000489180 SEPT7Q16181 437 aaKnown RBP20.6■□□□□ 0.89
NPHP4-209ENST00000489180 RAB11FIP3O75154 756 aa20.6■□□□□ 0.89
NPHP4-209ENST00000489180 TRIM27P14373 513 aa20.6■□□□□ 0.89
NPHP4-209ENST00000489180 WASF1Q92558 559 aa20.6■□□□□ 0.89
NPHP4-209ENST00000489180 LRPPRCP42704 1394 aaKnown RBP20.59■□□□□ 0.89
NPHP4-209ENST00000489180 RBM5P52756 815 aaKnown RBP eCLIP20.59■□□□□ 0.89
NPHP4-209ENST00000489180 BICDL1Q6ZP65 573 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 TXLNBQ8N3L3 684 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 NCAPD3P42695 1498 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 IGHDP01880 384 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 ZC3H6P61129 1189 aaKnown RBP20.59■□□□□ 0.89
NPHP4-209ENST00000489180 TMCO3Q6UWJ1 677 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 RBM27Q9P2N5 1060 aaKnown RBP20.59■□□□□ 0.89
NPHP4-209ENST00000489180 TAF3Q5VWG9 929 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 TRMT1Q9NXH9 659 aaKnown RBP20.59■□□□□ 0.89
NPHP4-209ENST00000489180 ABCF2Q9UG63 623 aa20.59■□□□□ 0.89
NPHP4-209ENST00000489180 USP5P45974 858 aa20.58■□□□□ 0.89
NPHP4-209ENST00000489180 IQCEQ6IPM2 695 aa20.58■□□□□ 0.89
NPHP4-209ENST00000489180 MYD88Q99836 296 aa20.58■□□□□ 0.89
NPHP4-209ENST00000489180 RPGRIP1LQ68CZ1 1315 aa20.58■□□□□ 0.89
NPHP4-209ENST00000489180 METTL24Q5JXM2 366 aa20.58■□□□□ 0.88
NPHP4-209ENST00000489180 ANO10Q9NW15 660 aa20.58■□□□□ 0.88
NPHP4-209ENST00000489180 NME9Q86XW9 330 aa20.58■□□□□ 0.88
NPHP4-209ENST00000489180 EMILIN1Q9Y6C2 1016 aa20.58■□□□□ 0.88
NPHP4-209ENST00000489180 U3KPZ7 1027 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 URI1O94763 535 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 TAF7Q15545 349 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 TBC1D9Q6ZT07 1266 aa20.57■□□□□ 0.88
NPHP4-209ENST00000489180 BMP2KQ9NSY1 1161 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 CCDC82Q8N4S0 544 aa20.57■□□□□ 0.88
NPHP4-209ENST00000489180 SCAND2PQ9GZW5 306 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 NESP48681 1621 aa20.57■□□□□ 0.88
NPHP4-209ENST00000489180 THEMISQ8N1K5 641 aaPredicted RBP20.57■□□□□ 0.88
NPHP4-209ENST00000489180 CCDC148Q8NFR7 591 aa20.56■□□□□ 0.88
NPHP4-209ENST00000489180 TSHZ3Q63HK5 1081 aa20.56■□□□□ 0.88
NPHP4-209ENST00000489180 C16orf45Q96MC5 204 aaPredicted RBP20.56■□□□□ 0.88
NPHP4-209ENST00000489180 CEP131Q9UPN4 1083 aa20.56■□□□□ 0.88
NPHP4-209ENST00000489180 CASQ1P31415 396 aa20.56■□□□□ 0.88
NPHP4-209ENST00000489180 MINDY4BA8MYZ0 360 aa20.55■□□□□ 0.88
NPHP4-209ENST00000489180 NUTM2BA6NNL0 878 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 NUTM2EB1AL46 878 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 NUTM2AQ8IVF1 878 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 LIMCH1Q9UPQ0 1083 aa20.55■□□□□ 0.88
NPHP4-209ENST00000489180 CCT2P78371 535 aaKnown RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 TAF4BQ92750 862 aa20.55■□□□□ 0.88
NPHP4-209ENST00000489180 C8orf76Q96K31 380 aa20.55■□□□□ 0.88
NPHP4-209ENST00000489180 TOP2BQ02880 1626 aa20.55■□□□□ 0.88
NPHP4-209ENST00000489180 SH2B1Q9NRF2 756 aaPredicted RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 TFIP11Q9UBB9 837 aaKnown RBP20.55■□□□□ 0.88
NPHP4-209ENST00000489180 IFIT1P09914 478 aaKnown RBP20.54■□□□□ 0.88
NPHP4-209ENST00000489180 KIF18AQ8NI77 898 aa20.54■□□□□ 0.88
NPHP4-209ENST00000489180 ZSCAN29Q8IWY8 852 aaPredicted RBP20.54■□□□□ 0.88
NPHP4-209ENST00000489180 TNNT1P13805 278 aa20.54■□□□□ 0.88
NPHP4-209ENST00000489180 POLA1P09884 1462 aaPredicted RBP20.54■□□□□ 0.88
NPHP4-209ENST00000489180 TOP1P11387 765 aaKnown RBP20.54■□□□□ 0.88
NPHP4-209ENST00000489180 PDIA4P13667 645 aaKnown RBP20.54■□□□□ 0.88
NPHP4-209ENST00000489180 CPLX3Q8WVH0 158 aa20.54■□□□□ 0.88
NPHP4-209ENST00000489180 PRDM11Q9NQV5 511 aa20.54■□□□□ 0.88
NPHP4-209ENST00000489180 CCDC61Q9Y6R9 512 aa20.54■□□□□ 0.88
NPHP4-209ENST00000489180 ZSCAN12O43309 604 aa20.53■□□□□ 0.88
NPHP4-209ENST00000489180 PTCD1O75127 700 aaKnown RBP20.53■□□□□ 0.88
NPHP4-209ENST00000489180 GJB2P29033 226 aa20.53■□□□□ 0.88
NPHP4-209ENST00000489180 PPFIA3O75145 1194 aa20.53■□□□□ 0.88
NPHP4-209ENST00000489180 IGHMBP2P38935 993 aaKnown RBP20.53■□□□□ 0.88
NPHP4-209ENST00000489180 WWC2Q6AWC2 1192 aa20.53■□□□□ 0.88
NPHP4-209ENST00000489180 PAF1Q8N7H5 531 aa20.53■□□□□ 0.88
NPHP4-209ENST00000489180 ZNF76P36508 570 aa20.52■□□□□ 0.88
NPHP4-209ENST00000489180 ADCY5O95622 1261 aa20.52■□□□□ 0.88
NPHP4-209ENST00000489180 GOLGA6L7A0A1B0GV03 622 aa20.52■□□□□ 0.88
NPHP4-209ENST00000489180 BIN1O00499 593 aa20.52■□□□□ 0.88
NPHP4-209ENST00000489180 ZNF397Q8NF99 534 aaPredicted RBP20.52■□□□□ 0.88
NPHP4-209ENST00000489180 CRACR2AQ9BSW2 395 aa20.52■□□□□ 0.87
NPHP4-209ENST00000489180 KIF4BQ2VIQ3 1234 aa20.51■□□□□ 0.87
NPHP4-209ENST00000489180 POLR3GO15318 223 aaPredicted RBP20.51■□□□□ 0.87
NPHP4-209ENST00000489180 BAG4O95429 457 aaKnown RBP20.51■□□□□ 0.87
NPHP4-209ENST00000489180 DNA2P51530 1060 aa20.51■□□□□ 0.87
NPHP4-209ENST00000489180 PLEKHH1Q9ULM0 1364 aa20.51■□□□□ 0.87
NPHP4-209ENST00000489180 EPRSP07814 1512 aaKnown RBP20.51■□□□□ 0.87
NPHP4-209ENST00000489180 KIF2AO00139 706 aaPredicted RBP20.51■□□□□ 0.87
NPHP4-209ENST00000489180 PCF11O94913 1555 aaKnown RBP20.5■□□□□ 0.87
NPHP4-209ENST00000489180 ABCC11Q96J66 1382 aa20.5■□□□□ 0.87
NPHP4-209ENST00000489180 KIF5CO60282 957 aa20.5■□□□□ 0.87
NPHP4-209ENST00000489180 LARP1Q6PKG0 1096 aaKnown RBP20.5■□□□□ 0.87
NPHP4-209ENST00000489180 FSIP1Q8NA03 581 aa20.5■□□□□ 0.87
NPHP4-209ENST00000489180 ARHGEF11O15085 1522 aa20.5■□□□□ 0.87
NPHP4-209ENST00000489180 SSR1P43307 286 aaKnown RBP20.5■□□□□ 0.87
NPHP4-209ENST00000489180 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.5■□□□□ 0.87
NPHP4-209ENST00000489180 MPRIPQ6WCQ1 1025 aa20.5■□□□□ 0.87
NPHP4-209ENST00000489180 SPA17Q15506 151 aa20.49■□□□□ 0.87
NPHP4-209ENST00000489180 PPP1R1BQ9UD71 204 aaPredicted RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms