RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 DCAF5Q96JK2 942 aa33.44■■■□□ 2.94
LIME1-206ENST00000487026 ERVV-2B6SEH9 535 aa33.43■■■□□ 2.94
LIME1-206ENST00000487026 PER1O15534 1290 aaPredicted RBP33.43■■■□□ 2.94
LIME1-206ENST00000487026 PELP1Q8IZL8 1130 aaKnown RBP33.43■■■□□ 2.94
LIME1-206ENST00000487026 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.42■■■□□ 2.94
LIME1-206ENST00000487026 HSP90AB1P08238 724 aaKnown RBP33.42■■■□□ 2.94
LIME1-206ENST00000487026 MTHFSP49914 203 aa33.41■■■□□ 2.94
LIME1-206ENST00000487026 CC2D1BQ5T0F9 858 aaKnown RBP33.41■■■□□ 2.94
LIME1-206ENST00000487026 KDM6AO15550 1401 aaPredicted RBP33.38■■■□□ 2.93
LIME1-206ENST00000487026 CABP4P57796 275 aa33.38■■■□□ 2.93
LIME1-206ENST00000487026 CNGB1Q14028 1251 aaPredicted RBP33.38■■■□□ 2.93
LIME1-206ENST00000487026 RBM42Q9BTD8 480 aaKnown RBP33.38■■■□□ 2.93
LIME1-206ENST00000487026 UBR3Q6ZT12 1888 aa33.37■■■□□ 2.93
LIME1-206ENST00000487026 GNPATO15228 680 aa33.37■■■□□ 2.93
LIME1-206ENST00000487026 C1orf141Q5JVX7 400 aa33.37■■■□□ 2.93
LIME1-206ENST00000487026 SLC4A9Q96Q91 983 aa33.37■■■□□ 2.93
LIME1-206ENST00000487026 SSFA2P28290 1259 aa33.35■■■□□ 2.93
LIME1-206ENST00000487026 KDRP35968 1356 aa33.34■■■□□ 2.93
LIME1-206ENST00000487026 ZNF784Q8NCA9 323 aaPredicted RBP33.32■■■□□ 2.92
LIME1-206ENST00000487026 NFATC2IPQ8NCF5 419 aa33.32■■■□□ 2.92
LIME1-206ENST00000487026 GOLGB1Q14789 3259 aaKnown RBP33.32■■■□□ 2.92
LIME1-206ENST00000487026 HMOX1P09601 288 aa33.31■■■□□ 2.92
LIME1-206ENST00000487026 YBX3P16989 372 aaKnown RBP eCLIP33.29■■■□□ 2.92
LIME1-206ENST00000487026 CHD4Q14839 1912 aa33.29■■■□□ 2.92
LIME1-206ENST00000487026 CD2APQ9Y5K6 639 aa33.28■■■□□ 2.92
LIME1-206ENST00000487026 PTCD1O75127 700 aaKnown RBP33.27■■■□□ 2.92
LIME1-206ENST00000487026 DIAPH1O60610 1272 aaKnown RBP33.25■■■□□ 2.91
LIME1-206ENST00000487026 RTCBQ9Y3I0 505 aaKnown RBP33.25■■■□□ 2.91
LIME1-206ENST00000487026 AKAP4Q5JQC9 854 aa33.24■■■□□ 2.91
LIME1-206ENST00000487026 TRAPPC3LQ5T215 181 aa33.24■■■□□ 2.91
LIME1-206ENST00000487026 LGR6Q9HBX8 967 aa33.24■■■□□ 2.91
LIME1-206ENST00000487026 RC3H1Q5TC82 1133 aaKnown RBP33.22■■■□□ 2.91
LIME1-206ENST00000487026 ARHGEF1Q92888 912 aaKnown RBP33.2■■■□□ 2.91
LIME1-206ENST00000487026 GRIN3BO60391 1043 aa33.19■■■□□ 2.9
LIME1-206ENST00000487026 ZNF831Q5JPB2 1677 aa33.19■■■□□ 2.9
LIME1-206ENST00000487026 MTHFSDQ2M296 383 aaKnown RBP33.18■■■□□ 2.9
LIME1-206ENST00000487026 CNTNAP4Q9C0A0 1308 aa33.18■■■□□ 2.9
LIME1-206ENST00000487026 NPC1L1Q9UHC9 1359 aa33.18■■■□□ 2.9
LIME1-206ENST00000487026 RPS6KA4O75676 772 aa33.17■■■□□ 2.9
LIME1-206ENST00000487026 MMP10P09238 476 aa33.17■■■□□ 2.9
LIME1-206ENST00000487026 WWC3Q9ULE0 1092 aa33.17■■■□□ 2.9
LIME1-206ENST00000487026 SCN11AQ9UI33 1791 aa33.16■■■□□ 2.9
LIME1-206ENST00000487026 RNMTO43148 476 aaKnown RBP33.16■■■□□ 2.9
LIME1-206ENST00000487026 SLC52A2Q9HAB3 445 aa33.16■■■□□ 2.9
LIME1-206ENST00000487026 COL5A3P25940 1745 aaPredicted RBP33.16■■■□□ 2.9
LIME1-206ENST00000487026 U2SURPO15042 1029 aaKnown RBP33.14■■■□□ 2.9
LIME1-206ENST00000487026 CRKLP46109 303 aaKnown RBP33.14■■■□□ 2.9
LIME1-206ENST00000487026 MYH14Q7Z406 1995 aaKnown RBP33.13■■■□□ 2.89
LIME1-206ENST00000487026 RFC4P35249 363 aa33.13■■■□□ 2.89
LIME1-206ENST00000487026 ADRA2BP18089 450 aa33.12■■■□□ 2.89
LIME1-206ENST00000487026 SLC39A6Q13433 755 aa33.12■■■□□ 2.89
LIME1-206ENST00000487026 NLGN1Q8N2Q7 840 aa33.12■■■□□ 2.89
LIME1-206ENST00000487026 GYS1P13807 737 aa33.11■■■□□ 2.89
LIME1-206ENST00000487026 COL3A1P02461 1466 aaPredicted RBP33.11■■■□□ 2.89
LIME1-206ENST00000487026 DNAJC10Q8IXB1 793 aa33.08■■■□□ 2.89
LIME1-206ENST00000487026 INTS5Q6P9B9 1019 aaKnown RBP33.07■■■□□ 2.88
LIME1-206ENST00000487026 SRP68Q9UHB9 627 aaKnown RBP33.07■■■□□ 2.88
LIME1-206ENST00000487026 TJP1Q07157 1748 aa33.06■■■□□ 2.88
LIME1-206ENST00000487026 CICQ96RK0 1608 aaPredicted RBP33.03■■■□□ 2.88
LIME1-206ENST00000487026 MRC1P22897 1456 aa33.03■■■□□ 2.88
LIME1-206ENST00000487026 VIRMAQ69YN4 1812 aaKnown RBP33.02■■■□□ 2.88
LIME1-206ENST00000487026 CCDC87Q9NVE4 849 aa33.01■■■□□ 2.87
LIME1-206ENST00000487026 PARP3Q9Y6F1 533 aa33.01■■■□□ 2.87
LIME1-206ENST00000487026 C4AP0C0L4 1744 aa33■■■□□ 2.87
LIME1-206ENST00000487026 A0A0G2JLW4 131 aa32.99■■■□□ 2.87
LIME1-206ENST00000487026 CYP19A1P11511 503 aaPredicted RBP32.99■■■□□ 2.87
LIME1-206ENST00000487026 FKBP8Q14318 412 aa32.99■■■□□ 2.87
LIME1-206ENST00000487026 CFAP53Q96M91 514 aa32.99■■■□□ 2.87
LIME1-206ENST00000487026 ADAMTS7Q9UKP4 1686 aa32.98■■■□□ 2.87
LIME1-206ENST00000487026 IL17REQ8NFR9 667 aa32.98■■■□□ 2.87
LIME1-206ENST00000487026 USP42Q9H9J4 1324 aaKnown RBP32.98■■■□□ 2.87
LIME1-206ENST00000487026 KCPQ6ZWJ8 1503 aa32.97■■■□□ 2.87
LIME1-206ENST00000487026 GNAT3A8MTJ3 354 aa32.97■■■□□ 2.87
LIME1-206ENST00000487026 GAS2L2Q8NHY3 880 aa32.97■■■□□ 2.87
LIME1-206ENST00000487026 PHACTR3Q96KR7 559 aa32.97■■■□□ 2.87
LIME1-206ENST00000487026 PXDNLA1KZ92 1463 aa32.97■■■□□ 2.87
LIME1-206ENST00000487026 PPP2R1AP30153 589 aa32.96■■■□□ 2.87
LIME1-206ENST00000487026 TGFB2P61812 414 aa32.96■■■□□ 2.87
LIME1-206ENST00000487026 C10orf71Q711Q0 1435 aa32.94■■■□□ 2.86
LIME1-206ENST00000487026 PRKAR2BP31323 418 aa32.94■■■□□ 2.86
LIME1-206ENST00000487026 C1QTNF8P60827 252 aa32.94■■■□□ 2.86
LIME1-206ENST00000487026 SOS1Q07889 1333 aaPredicted RBP32.94■■■□□ 2.86
LIME1-206ENST00000487026 N4BP2Q86UW6 1770 aaPredicted RBP32.93■■■□□ 2.86
LIME1-206ENST00000487026 KIF13BQ9NQT8 1826 aa32.93■■■□□ 2.86
LIME1-206ENST00000487026 DPEP1P16444 411 aa32.93■■■□□ 2.86
LIME1-206ENST00000487026 DDR1Q08345 913 aa32.93■■■□□ 2.86
LIME1-206ENST00000487026 TEFQ10587 303 aa32.93■■■□□ 2.86
LIME1-206ENST00000487026 RSPH6AQ9H0K4 717 aa32.93■■■□□ 2.86
LIME1-206ENST00000487026 ZPR1O75312 459 aa32.92■■■□□ 2.86
LIME1-206ENST00000487026 GIGYF1O75420 1035 aaPredicted RBP32.92■■■□□ 2.86
LIME1-206ENST00000487026 USPL1Q5W0Q7 1092 aa32.92■■■□□ 2.86
LIME1-206ENST00000487026 TTC5Q8N0Z6 440 aa32.92■■■□□ 2.86
LIME1-206ENST00000487026 ZBTB1Q9Y2K1 713 aa32.92■■■□□ 2.86
LIME1-206ENST00000487026 VSIG10Q8N0Z9 540 aa32.91■■■□□ 2.86
LIME1-206ENST00000487026 NUDCQ9Y266 331 aa32.91■■■□□ 2.86
LIME1-206ENST00000487026 BCS1LQ9Y276 419 aa32.91■■■□□ 2.86
LIME1-206ENST00000487026 ATP10DQ9P241 1426 aa32.91■■■□□ 2.86
LIME1-206ENST00000487026 KIAA1551Q9HCM1 1747 aa32.91■■■□□ 2.86
LIME1-206ENST00000487026 U2AF1L5P0DN76 240 aaPredicted RBP32.89■■■□□ 2.86
LIME1-206ENST00000487026 U2AF1Q01081 240 aaKnown RBP eCLIP32.89■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 170.1 ms