RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 SND1Q7KZF4 910 aaKnown RBP eCLIP9□□□□□ -0.97
UPF3A-205ENST00000479712 EHBP1Q8NDI1 1231 aa9□□□□□ -0.97
UPF3A-205ENST00000479712 PCDHGA11Q9Y5H2 935 aa9□□□□□ -0.97
UPF3A-205ENST00000479712 KIF21BO75037 1637 aa9□□□□□ -0.97
UPF3A-205ENST00000479712 INTS6LQ5JSJ4 861 aaKnown RBP8.99□□□□□ -0.97
UPF3A-205ENST00000479712 TXNDC2Q86VQ3 553 aa8.99□□□□□ -0.97
UPF3A-205ENST00000479712 POLA1P09884 1462 aaPredicted RBP8.99□□□□□ -0.97
UPF3A-205ENST00000479712 DNMBPQ6XZF7 1577 aa8.99□□□□□ -0.97
UPF3A-205ENST00000479712 PRDM2Q13029 1718 aa8.98□□□□□ -0.97
UPF3A-205ENST00000479712 SFI1A8K8P3 1242 aa8.98□□□□□ -0.97
UPF3A-205ENST00000479712 CD2BP2O95400 341 aaKnown RBP8.98□□□□□ -0.97
UPF3A-205ENST00000479712 ARID4AP29374 1257 aaPredicted RBP8.98□□□□□ -0.97
UPF3A-205ENST00000479712 ARID5BQ14865 1188 aa8.98□□□□□ -0.97
UPF3A-205ENST00000479712 RGS22Q8NE09 1264 aa8.98□□□□□ -0.97
UPF3A-205ENST00000479712 ERVH48-1M5A8F1 160 aa8.97□□□□□ -0.97
UPF3A-205ENST00000479712 CCDC27Q2M243 656 aa8.97□□□□□ -0.97
UPF3A-205ENST00000479712 ESF1Q9H501 851 aaKnown RBP8.97□□□□□ -0.97
UPF3A-205ENST00000479712 MTMR7Q9Y216 660 aa8.97□□□□□ -0.97
UPF3A-205ENST00000479712 ADCY10Q96PN6 1610 aa8.96□□□□□ -0.98
UPF3A-205ENST00000479712 PRMT3O60678 531 aa8.96□□□□□ -0.98
UPF3A-205ENST00000479712 FSHRP23945 695 aa8.96□□□□□ -0.98
UPF3A-205ENST00000479712 RC3H1Q5TC82 1133 aaKnown RBP8.96□□□□□ -0.98
UPF3A-205ENST00000479712 WIZO95785 1651 aa8.95□□□□□ -0.98
UPF3A-205ENST00000479712 SCTRP47872 440 aa8.95□□□□□ -0.98
UPF3A-205ENST00000479712 CDK15Q96Q40 435 aa8.95□□□□□ -0.98
UPF3A-205ENST00000479712 TLL2Q9Y6L7 1015 aa8.95□□□□□ -0.98
UPF3A-205ENST00000479712 ERVK-9P63128 1117 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 DHX9Q08211 1270 aaKnown RBP8.94□□□□□ -0.98
UPF3A-205ENST00000479712 CC2D2BQ6DHV5 1058 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 TRIM52Q96A61 297 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 PRIMPOLQ96LW4 560 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 HINFPQ9BQA5 517 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 GRIN2BQ13224 1484 aa8.94□□□□□ -0.98
UPF3A-205ENST00000479712 LIAT1Q6ZQX7 453 aa8.93□□□□□ -0.98
UPF3A-205ENST00000479712 C1orf216Q8TAB5 229 aa8.93□□□□□ -0.98
UPF3A-205ENST00000479712 CXXC1Q9P0U4 656 aaPredicted RBP8.93□□□□□ -0.98
UPF3A-205ENST00000479712 SHROOM2Q13796 1616 aa8.93□□□□□ -0.98
UPF3A-205ENST00000479712 ABCC8Q09428 1581 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 NRG2O14511 850 aaPredicted RBP8.92□□□□□ -0.98
UPF3A-205ENST00000479712 GRM5P41594 1212 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 OCLNQ16625 522 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 PRKD2Q9BZL6 878 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 CYLDQ9NQC7 956 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 TMPRSS4Q9NRS4 437 aa8.92□□□□□ -0.98
UPF3A-205ENST00000479712 M0R2N6 131 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 LGR5O75473 907 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 SCNN1AP37088 669 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 SERPINB4P48594 390 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 MPNDQ8N594 471 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.91□□□□□ -0.98
UPF3A-205ENST00000479712 TSEN2Q8NCE0 465 aaKnown RBP8.91□□□□□ -0.98
UPF3A-205ENST00000479712 ADAMTSL3P82987 1691 aa8.91□□□□□ -0.98
UPF3A-205ENST00000479712 SOGA1O94964 1423 aa8.9□□□□□ -0.98
UPF3A-205ENST00000479712 ADH1CP00326 375 aa8.9□□□□□ -0.98
UPF3A-205ENST00000479712 FOXD4L5Q5VV16 416 aaPredicted RBP8.9□□□□□ -0.98
UPF3A-205ENST00000479712 CCDC116Q8IYX3 515 aa8.9□□□□□ -0.98
UPF3A-205ENST00000479712 ZNF784Q8NCA9 323 aaPredicted RBP8.9□□□□□ -0.98
UPF3A-205ENST00000479712 FOXD4L4Q8WXT5 416 aaPredicted RBP8.9□□□□□ -0.98
UPF3A-205ENST00000479712 OSBPL3Q9H4L5 887 aa8.9□□□□□ -0.98
UPF3A-205ENST00000479712 ZNF358Q9NW07 568 aa8.9□□□□□ -0.98
UPF3A-205ENST00000479712 PRG4Q92954 1404 aaPredicted RBP8.89□□□□□ -0.99
UPF3A-205ENST00000479712 PBRM1Q86U86 1689 aa8.89□□□□□ -0.99
UPF3A-205ENST00000479712 SOWAHDA6NJG2 315 aa8.89□□□□□ -0.99
UPF3A-205ENST00000479712 SIAH2O43255 324 aa8.89□□□□□ -0.99
UPF3A-205ENST00000479712 TAS1R3Q7RTX0 852 aa8.89□□□□□ -0.99
UPF3A-205ENST00000479712 EMID1Q96A84 441 aaPredicted RBP8.89□□□□□ -0.99
UPF3A-205ENST00000479712 TMEM229AB2RXF0 380 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 WNT7AO00755 349 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 SLC19A1P41440 591 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 GDF10P55107 478 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 MYT1Q01538 1121 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 NR5A1Q13285 461 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 PPP1R26Q5T8A7 1209 aaPredicted RBP8.88□□□□□ -0.99
UPF3A-205ENST00000479712 MRGPRX2Q96LB1 330 aa8.88□□□□□ -0.99
UPF3A-205ENST00000479712 MADDQ8WXG6 1647 aa8.87□□□□□ -0.99
UPF3A-205ENST00000479712 WEE1P30291 646 aa8.87□□□□□ -0.99
UPF3A-205ENST00000479712 SCNN1DP51172 638 aa8.87□□□□□ -0.99
UPF3A-205ENST00000479712 V9GY48 417 aaPredicted RBP8.87□□□□□ -0.99
UPF3A-205ENST00000479712 BACH1O14867 736 aa8.86□□□□□ -0.99
UPF3A-205ENST00000479712 STAU1O95793 577 aaKnown RBP8.86□□□□□ -0.99
UPF3A-205ENST00000479712 ABL1P00519 1130 aa8.86□□□□□ -0.99
UPF3A-205ENST00000479712 ZNF787Q6DD87 383 aa8.86□□□□□ -0.99
UPF3A-205ENST00000479712 CYP2U1Q7Z449 544 aa8.86□□□□□ -0.99
UPF3A-205ENST00000479712 MKNK1Q9BUB5 465 aa8.86□□□□□ -0.99
UPF3A-205ENST00000479712 GRIN2AQ12879 1464 aa8.85□□□□□ -0.99
UPF3A-205ENST00000479712 WASLO00401 505 aaPredicted RBP8.85□□□□□ -0.99
UPF3A-205ENST00000479712 LILRA1O75019 489 aa8.85□□□□□ -0.99
UPF3A-205ENST00000479712 ETNK1Q9HBU6 452 aa8.85□□□□□ -0.99
UPF3A-205ENST00000479712 PGPEP1Q9NXJ5 209 aa8.85□□□□□ -0.99
UPF3A-205ENST00000479712 BIN2Q9UBW5 565 aaPredicted RBP8.85□□□□□ -0.99
UPF3A-205ENST00000479712 WDR97A6NE52 1622 aa8.84□□□□□ -0.99
UPF3A-205ENST00000479712 INHAP05111 366 aa8.84□□□□□ -0.99
UPF3A-205ENST00000479712 NR3C2P08235 984 aa8.84□□□□□ -0.99
UPF3A-205ENST00000479712 FKBP5Q13451 457 aaPredicted RBP8.84□□□□□ -0.99
UPF3A-205ENST00000479712 EGFL7Q9UHF1 273 aa8.84□□□□□ -0.99
UPF3A-205ENST00000479712 SERTAD1Q9UHV2 236 aa8.84□□□□□ -0.99
UPF3A-205ENST00000479712 NUP160Q12769 1436 aa8.83□□□□□ -1
UPF3A-205ENST00000479712 UBAP1LF5GYI3 381 aa8.83□□□□□ -1
UPF3A-205ENST00000479712 PTCD1O75127 700 aaKnown RBP8.83□□□□□ -1
UPF3A-205ENST00000479712 GNRH1P01148 92 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms