RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NLGN1Q8N2Q7 840 aa23.91■■□□□ 1.42
VIM-204ENST00000478746 ATG3Q9NT62 314 aa23.91■■□□□ 1.42
VIM-204ENST00000478746 KIF20BQ96Q89 1820 aa23.91■■□□□ 1.42
VIM-204ENST00000478746 DNAJC5GQ8N7S2 189 aa23.9■■□□□ 1.42
VIM-204ENST00000478746 EYA1Q99502 592 aa23.9■■□□□ 1.42
VIM-204ENST00000478746 CARD14Q9BXL6 1004 aa23.9■■□□□ 1.42
VIM-204ENST00000478746 RTCBQ9Y3I0 505 aaKnown RBP23.9■■□□□ 1.42
VIM-204ENST00000478746 PHKG2P15735 406 aa23.89■■□□□ 1.41
VIM-204ENST00000478746 NCAPD2Q15021 1401 aa23.89■■□□□ 1.41
VIM-204ENST00000478746 CICQ96RK0 1608 aaPredicted RBP23.88■■□□□ 1.41
VIM-204ENST00000478746 PXDNLA1KZ92 1463 aa23.88■■□□□ 1.41
VIM-204ENST00000478746 WASHC2AQ641Q2 1341 aa23.88■■□□□ 1.41
VIM-204ENST00000478746 N4BP2Q86UW6 1770 aaPredicted RBP23.86■■□□□ 1.41
VIM-204ENST00000478746 FCHSD2O94868 740 aa23.85■■□□□ 1.41
VIM-204ENST00000478746 DPEP1P16444 411 aa23.85■■□□□ 1.41
VIM-204ENST00000478746 ARHGEF1Q92888 912 aaKnown RBP23.85■■□□□ 1.41
VIM-204ENST00000478746 NMRK2Q9NPI5 230 aa23.85■■□□□ 1.41
VIM-204ENST00000478746 CCDC87Q9NVE4 849 aa23.85■■□□□ 1.41
VIM-204ENST00000478746 KIF13BQ9NQT8 1826 aa23.84■■□□□ 1.41
VIM-204ENST00000478746 RBM42Q9BTD8 480 aaKnown RBP23.84■■□□□ 1.41
VIM-204ENST00000478746 RC3H1Q5TC82 1133 aaKnown RBP23.83■■□□□ 1.41
VIM-204ENST00000478746 PARP3Q9Y6F1 533 aa23.83■■□□□ 1.41
VIM-204ENST00000478746 ADRA2BP18089 450 aa23.82■■□□□ 1.4
VIM-204ENST00000478746 RFC4P35249 363 aa23.82■■□□□ 1.4
VIM-204ENST00000478746 GYS1P13807 737 aa23.81■■□□□ 1.4
VIM-204ENST00000478746 C16orf71Q8IYS4 520 aaPredicted RBP23.81■■□□□ 1.4
VIM-204ENST00000478746 SLC4A9Q96Q91 983 aa23.81■■□□□ 1.4
VIM-204ENST00000478746 C10orf71Q711Q0 1435 aa23.81■■□□□ 1.4
VIM-204ENST00000478746 KIAA1551Q9HCM1 1747 aa23.81■■□□□ 1.4
VIM-204ENST00000478746 ERVV-2B6SEH9 535 aa23.8■■□□□ 1.4
VIM-204ENST00000478746 RPS6KA4O75676 772 aa23.8■■□□□ 1.4
VIM-204ENST00000478746 C9orf131Q5VYM1 1079 aa23.8■■□□□ 1.4
VIM-204ENST00000478746 RBM46Q8TBY0 533 aaKnown RBP23.8■■□□□ 1.4
VIM-204ENST00000478746 POLKQ9UBT6 870 aa23.8■■□□□ 1.4
VIM-204ENST00000478746 KCNA3P22001 575 aa23.78■■□□□ 1.4
VIM-204ENST00000478746 KDRP35968 1356 aa23.78■■□□□ 1.4
VIM-204ENST00000478746 HSP90AB1P08238 724 aaKnown RBP23.77■■□□□ 1.4
VIM-204ENST00000478746 EIF4A2Q14240 407 aaKnown RBP23.77■■□□□ 1.4
VIM-204ENST00000478746 PIM2Q9P1W9 311 aa23.77■■□□□ 1.4
VIM-204ENST00000478746 CNTNAP4Q9C0A0 1308 aa23.77■■□□□ 1.4
VIM-204ENST00000478746 DCAF5Q96JK2 942 aa23.76■■□□□ 1.39
VIM-204ENST00000478746 ANKRD26Q9UPS8 1709 aa23.76■■□□□ 1.39
VIM-204ENST00000478746 C4AP0C0L4 1744 aa23.75■■□□□ 1.39
VIM-204ENST00000478746 FSTL1Q12841 308 aa23.74■■□□□ 1.39
VIM-204ENST00000478746 TNNT2P45379 298 aaPredicted RBP23.73■■□□□ 1.39
VIM-204ENST00000478746 CABP4P57796 275 aa23.73■■□□□ 1.39
VIM-204ENST00000478746 HTRA3P83110 453 aa23.73■■□□□ 1.39
VIM-204ENST00000478746 PLEKHO1Q53GL0 409 aaPredicted RBP23.73■■□□□ 1.39
VIM-204ENST00000478746 DALRD3Q5D0E6 543 aaKnown RBP23.73■■□□□ 1.39
VIM-204ENST00000478746 KLRG1Q96E93 195 aa23.73■■□□□ 1.39
VIM-204ENST00000478746 PLEKHG2Q9H7P9 1386 aa23.73■■□□□ 1.39
VIM-204ENST00000478746 ZNF831Q5JPB2 1677 aa23.73■■□□□ 1.39
VIM-204ENST00000478746 KDM2BQ8NHM5 1336 aa23.72■■□□□ 1.39
VIM-204ENST00000478746 BRCA1P38398 1863 aaKnown RBP23.71■■□□□ 1.39
VIM-204ENST00000478746 WDR90Q96KV7 1748 aa23.71■■□□□ 1.39
VIM-204ENST00000478746 RRAGCQ9HB90 399 aa23.71■■□□□ 1.39
VIM-204ENST00000478746 RNF181Q9P0P0 153 aa23.71■■□□□ 1.39
VIM-204ENST00000478746 PTCD1O75127 700 aaKnown RBP23.7■■□□□ 1.38
VIM-204ENST00000478746 JMYQ8N9B5 988 aa23.7■■□□□ 1.38
VIM-204ENST00000478746 MYH14Q7Z406 1995 aaKnown RBP23.69■■□□□ 1.38
VIM-204ENST00000478746 ARFGEF1Q9Y6D6 1849 aa23.69■■□□□ 1.38
VIM-204ENST00000478746 ZNF530Q6P9A1 599 aaPredicted RBP23.69■■□□□ 1.38
VIM-204ENST00000478746 SRP68Q9UHB9 627 aaKnown RBP23.69■■□□□ 1.38
VIM-204ENST00000478746 COL5A3P25940 1745 aaPredicted RBP23.69■■□□□ 1.38
VIM-204ENST00000478746 CRKLP46109 303 aaKnown RBP23.68■■□□□ 1.38
VIM-204ENST00000478746 FKBP8Q14318 412 aa23.68■■□□□ 1.38
VIM-204ENST00000478746 AMOTQ4VCS5 1084 aa23.68■■□□□ 1.38
VIM-204ENST00000478746 COL13A1Q5TAT6 717 aaPredicted RBP23.68■■□□□ 1.38
VIM-204ENST00000478746 MTHFSP49914 203 aa23.67■■□□□ 1.38
VIM-204ENST00000478746 KCPQ6ZWJ8 1503 aa23.67■■□□□ 1.38
VIM-204ENST00000478746 USP42Q9H9J4 1324 aaKnown RBP23.65■■□□□ 1.38
VIM-204ENST00000478746 CHRNA5P30532 468 aa23.65■■□□□ 1.38
VIM-204ENST00000478746 DDR1Q08345 913 aa23.65■■□□□ 1.38
VIM-204ENST00000478746 NFATC2IPQ8NCF5 419 aa23.65■■□□□ 1.38
VIM-204ENST00000478746 C1orf141Q5JVX7 400 aa23.64■■□□□ 1.37
VIM-204ENST00000478746 POLR3GLQ9BT43 218 aa23.64■■□□□ 1.37
VIM-204ENST00000478746 KDM6AO15550 1401 aaPredicted RBP23.64■■□□□ 1.37
VIM-204ENST00000478746 TM4SF1P30408 202 aa23.62■■□□□ 1.37
VIM-204ENST00000478746 SMC1BQ8NDV3 1235 aa23.62■■□□□ 1.37
VIM-204ENST00000478746 POLRMTO00411 1230 aaKnown RBP23.61■■□□□ 1.37
VIM-204ENST00000478746 SBF1O95248 1867 aa23.6■■□□□ 1.37
VIM-204ENST00000478746 ZPR1O75312 459 aa23.6■■□□□ 1.37
VIM-204ENST00000478746 CAPN15O75808 1086 aa23.6■■□□□ 1.37
VIM-204ENST00000478746 INTS5Q6P9B9 1019 aaKnown RBP23.6■■□□□ 1.37
VIM-204ENST00000478746 TNS4Q8IZW8 715 aa23.58■■□□□ 1.37
VIM-204ENST00000478746 USPL1Q5W0Q7 1092 aa23.57■■□□□ 1.36
VIM-204ENST00000478746 AEBP1Q8IUX7 1158 aa23.57■■□□□ 1.36
VIM-204ENST00000478746 PCNTO95613 3336 aa23.57■■□□□ 1.36
VIM-204ENST00000478746 TNRC6CQ9HCJ0 1690 aaKnown RBP23.56■■□□□ 1.36
VIM-204ENST00000478746 ZC3H4Q9UPT8 1303 aaKnown RBP23.56■■□□□ 1.36
VIM-204ENST00000478746 VEGFAP15692 232 aaPredicted RBP23.55■■□□□ 1.36
VIM-204ENST00000478746 RASSF7Q02833 373 aa23.55■■□□□ 1.36
VIM-204ENST00000478746 GLTPD2A6NH11 291 aa23.54■■□□□ 1.36
VIM-204ENST00000478746 LMNB1P20700 586 aa23.54■■□□□ 1.36
VIM-204ENST00000478746 SULT6B1Q6IMI4 303 aa23.54■■□□□ 1.36
VIM-204ENST00000478746 DNAJC10Q8IXB1 793 aa23.54■■□□□ 1.36
VIM-204ENST00000478746 PRELPP51888 382 aa23.52■■□□□ 1.36
VIM-204ENST00000478746 NFIXQ14938 502 aa23.52■■□□□ 1.36
VIM-204ENST00000478746 PANK3Q9H999 370 aa23.52■■□□□ 1.36
VIM-204ENST00000478746 TJP1Q07157 1748 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms