RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 AKAP4Q5JQC9 854 aa24.16■■□□□ 1.46
UPF3A-203ENST00000474056 COL23A1Q86Y22 540 aaPredicted RBP24.16■■□□□ 1.46
UPF3A-203ENST00000474056 LINC00116Q8NCU8 138 aa24.15■■□□□ 1.46
UPF3A-203ENST00000474056 HMGB2P26583 209 aaKnown RBP24.14■■□□□ 1.45
UPF3A-203ENST00000474056 ATP6V1AP38606 617 aa24.14■■□□□ 1.45
UPF3A-203ENST00000474056 ITPK1Q13572 414 aa24.14■■□□□ 1.45
UPF3A-203ENST00000474056 MTHFSDQ2M296 383 aaKnown RBP24.14■■□□□ 1.45
UPF3A-203ENST00000474056 MSH5O43196 834 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 AMIGO3Q86WK7 504 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 AK7Q96M32 723 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 CFAP53Q96M91 514 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 MRC1P22897 1456 aa24.13■■□□□ 1.45
UPF3A-203ENST00000474056 NFATC2IPQ8NCF5 419 aa24.12■■□□□ 1.45
UPF3A-203ENST00000474056 SLC4A9Q96Q91 983 aa24.12■■□□□ 1.45
UPF3A-203ENST00000474056 MYH14Q7Z406 1995 aaKnown RBP24.12■■□□□ 1.45
UPF3A-203ENST00000474056 ARXQ96QS3 562 aa24.11■■□□□ 1.45
UPF3A-203ENST00000474056 RBM42Q9BTD8 480 aaKnown RBP24.11■■□□□ 1.45
UPF3A-203ENST00000474056 FHDC1Q9C0D6 1143 aaPredicted RBP24.11■■□□□ 1.45
UPF3A-203ENST00000474056 LGR6Q9HBX8 967 aa24.11■■□□□ 1.45
UPF3A-203ENST00000474056 TJP1Q07157 1748 aa24.1■■□□□ 1.45
UPF3A-203ENST00000474056 SMIM5Q71RC9 77 aa24.1■■□□□ 1.45
UPF3A-203ENST00000474056 RNMTO43148 476 aaKnown RBP24.09■■□□□ 1.45
UPF3A-203ENST00000474056 CICQ96RK0 1608 aaPredicted RBP24.09■■□□□ 1.45
UPF3A-203ENST00000474056 PHF14O94880 888 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 FLAD1Q8NFF5 587 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 SYT17Q9BSW7 474 aa24.08■■□□□ 1.45
UPF3A-203ENST00000474056 POLD1P28340 1107 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 MSL1Q68DK7 614 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 SLC52A2Q9HAB3 445 aa24.07■■□□□ 1.44
UPF3A-203ENST00000474056 SIPA1L3O60292 1781 aaPredicted RBP24.06■■□□□ 1.44
UPF3A-203ENST00000474056 RSPH6AQ9H0K4 717 aa24.06■■□□□ 1.44
UPF3A-203ENST00000474056 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.05■■□□□ 1.44
UPF3A-203ENST00000474056 GNPATO15228 680 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 PTCD1O75127 700 aaKnown RBP24.05■■□□□ 1.44
UPF3A-203ENST00000474056 PRKAR2BP31323 418 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 NUDCQ9Y266 331 aa24.05■■□□□ 1.44
UPF3A-203ENST00000474056 MAP3K5Q99683 1374 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 UBR2Q8IWV8 1755 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 SSFA2P28290 1259 aa24.04■■□□□ 1.44
UPF3A-203ENST00000474056 GAS2L2Q8NHY3 880 aa24.03■■□□□ 1.44
UPF3A-203ENST00000474056 C4AP0C0L4 1744 aa24.03■■□□□ 1.44
UPF3A-203ENST00000474056 U2AF1L5P0DN76 240 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 U2AF1Q01081 240 aaKnown RBP eCLIP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 DDX10Q13206 875 aaKnown RBP24.02■■□□□ 1.44
UPF3A-203ENST00000474056 PHACTR3Q96KR7 559 aa24.02■■□□□ 1.44
UPF3A-203ENST00000474056 KCPQ6ZWJ8 1503 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 KLHL34Q8N239 644 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 CNTNAP4Q9C0A0 1308 aa24.01■■□□□ 1.43
UPF3A-203ENST00000474056 DLG5Q8TDM6 1919 aa24■■□□□ 1.43
UPF3A-203ENST00000474056 GNAT3A8MTJ3 354 aa23.99■■□□□ 1.43
UPF3A-203ENST00000474056 RC3H1Q5TC82 1133 aaKnown RBP23.98■■□□□ 1.43
UPF3A-203ENST00000474056 IL17REQ8NFR9 667 aa23.98■■□□□ 1.43
UPF3A-203ENST00000474056 RTCBQ9Y3I0 505 aaKnown RBP23.98■■□□□ 1.43
UPF3A-203ENST00000474056 DCAF8L1A6NGE4 600 aa23.96■■□□□ 1.43
UPF3A-203ENST00000474056 FCHSD2O94868 740 aa23.96■■□□□ 1.43
UPF3A-203ENST00000474056 CRKLP46109 303 aaKnown RBP23.96■■□□□ 1.43
UPF3A-203ENST00000474056 CEMIPQ8WUJ3 1361 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 RPS6KA4O75676 772 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 TRAPPC3LQ5T215 181 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 DNAJC10Q8IXB1 793 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 NLGN2Q8NFZ4 835 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 CHD4Q14839 1912 aa23.94■■□□□ 1.42
UPF3A-203ENST00000474056 TEFQ10587 303 aa23.93■■□□□ 1.42
UPF3A-203ENST00000474056 ARHGEF1Q92888 912 aaKnown RBP23.93■■□□□ 1.42
UPF3A-203ENST00000474056 UTRNP46939 3433 aa23.93■■□□□ 1.42
UPF3A-203ENST00000474056 ADRA2BP18089 450 aa23.92■■□□□ 1.42
UPF3A-203ENST00000474056 RALBP1Q15311 655 aa23.92■■□□□ 1.42
UPF3A-203ENST00000474056 TTC5Q8N0Z6 440 aa23.9■■□□□ 1.42
UPF3A-203ENST00000474056 INTS5Q6P9B9 1019 aaKnown RBP23.89■■□□□ 1.41
UPF3A-203ENST00000474056 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
UPF3A-203ENST00000474056 KIF13BQ9NQT8 1826 aa23.88■■□□□ 1.41
UPF3A-203ENST00000474056 CYP19A1P11511 503 aaPredicted RBP23.87■■□□□ 1.41
UPF3A-203ENST00000474056 RFC4P35249 363 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 ZNF790Q6PG37 636 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 MCM10Q7L590 875 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 CCDC87Q9NVE4 849 aa23.87■■□□□ 1.41
UPF3A-203ENST00000474056 GYS1P13807 737 aa23.86■■□□□ 1.41
UPF3A-203ENST00000474056 ZEB1P37275 1124 aaPredicted RBP23.86■■□□□ 1.41
UPF3A-203ENST00000474056 RTF1Q92541 710 aaKnown RBP23.86■■□□□ 1.41
UPF3A-203ENST00000474056 PLEKHF1Q96S99 279 aa23.86■■□□□ 1.41
UPF3A-203ENST00000474056 MYBBP1AQ9BQG0 1328 aaKnown RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 DCTN1Q14203 1278 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 ZNF496Q96IT1 587 aaPredicted RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 SRP68Q9UHB9 627 aaKnown RBP23.85■■□□□ 1.41
UPF3A-203ENST00000474056 ZBTB1Q9Y2K1 713 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 CD2APQ9Y5K6 639 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 HEG1Q9ULI3 1381 aa23.85■■□□□ 1.41
UPF3A-203ENST00000474056 SOS1Q07889 1333 aaPredicted RBP23.84■■□□□ 1.41
UPF3A-203ENST00000474056 BTBD11A6QL63 1104 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 MMP10P09238 476 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 YY1P25490 414 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 GPR162Q16538 588 aa23.84■■□□□ 1.41
UPF3A-203ENST00000474056 KCNQ3O43525 872 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 NLGN1Q8N2Q7 840 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 KIAA1551Q9HCM1 1747 aa23.83■■□□□ 1.41
UPF3A-203ENST00000474056 GOLGB1Q14789 3259 aaKnown RBP23.83■■□□□ 1.4
UPF3A-203ENST00000474056 USP42Q9H9J4 1324 aaKnown RBP23.83■■□□□ 1.4
UPF3A-203ENST00000474056 NEFMP07197 916 aa23.82■■□□□ 1.4
UPF3A-203ENST00000474056 PELP1Q8IZL8 1130 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms