RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 CPS1P31327 1500 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 GOLGA6L6A8MZA4 724 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 HSP90AB4PQ58FF6 505 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 TMEM87AQ8NBN3 555 aa7.4□□□□□ -1.22
HERC4-209ENST00000473533 UQCRHLA0A096LP55 91 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 SETD1AO15047 1707 aaKnown RBP7.4□□□□□ -1.23
HERC4-209ENST00000473533 RAPGEF3O95398 923 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 UQCRHP07919 91 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 MX1P20591 662 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 CCDC183Q5T5S1 534 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 CCDC30Q5VVM6 783 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 STAP2Q9UGK3 403 aa7.4□□□□□ -1.23
HERC4-209ENST00000473533 SYCE3A1L190 88 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 CHAF1AQ13111 956 aaPredicted RBP7.39□□□□□ -1.23
HERC4-209ENST00000473533 NME9Q86XW9 330 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 GPT2Q8TD30 523 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 SLC4A2P04920 1241 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 SULT6B1Q6IMI4 303 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 AEBP1Q8IUX7 1158 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 CACNA1FO60840 1977 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 TTC21AQ8NDW8 1320 aa7.39□□□□□ -1.23
HERC4-209ENST00000473533 RUFY2Q8WXA3 655 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 MEIS3Q99687 375 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 ANO2Q9NQ90 1003 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 TMEM63CQ9P1W3 806 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 TSPYL4Q9UJ04 414 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 ATP8B2P98198 1209 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 DNTTIP2Q5QJE6 756 aaKnown RBP7.38□□□□□ -1.23
HERC4-209ENST00000473533 ZGPATQ8N5A5 531 aaKnown RBP7.38□□□□□ -1.23
HERC4-209ENST00000473533 TRIM6-TRIM34B2RNG4 842 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 EIF4A2Q14240 407 aaKnown RBP7.38□□□□□ -1.23
HERC4-209ENST00000473533 ZSCAN31Q96LW9 406 aaPredicted RBP7.38□□□□□ -1.23
HERC4-209ENST00000473533 DIAPH3Q9NSV4 1193 aa7.38□□□□□ -1.23
HERC4-209ENST00000473533 CHMLP26374 656 aa7.37□□□□□ -1.23
HERC4-209ENST00000473533 UBE2HP62256 183 aa7.37□□□□□ -1.23
HERC4-209ENST00000473533 SMAP1Q8IYB5 467 aaPredicted RBP7.37□□□□□ -1.23
HERC4-209ENST00000473533 C16orf71Q8IYS4 520 aaPredicted RBP7.37□□□□□ -1.23
HERC4-209ENST00000473533 ZDHHC9Q9Y397 364 aa7.37□□□□□ -1.23
HERC4-209ENST00000473533 CNTROBQ8N137 903 aa7.37□□□□□ -1.23
HERC4-209ENST00000473533 CRB1P82279 1406 aa7.37□□□□□ -1.23
HERC4-209ENST00000473533 N4BP2Q86UW6 1770 aaPredicted RBP7.37□□□□□ -1.23
HERC4-209ENST00000473533 OVOS2A0A0J9YW53 1432 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 OVOS2Q6IE36 1432 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 USP31Q70CQ4 1352 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 PLEKHG5O94827 1062 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 ESF1Q9H501 851 aaKnown RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 SH2B1Q9NRF2 756 aaPredicted RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 FAM13BQ9NYF5 915 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 NALCNQ8IZF0 1738 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 SALL3Q9BXA9 1300 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 PLEKHG3A1L390 1219 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 SMARCA5O60264 1052 aaPredicted RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 SLC4A10Q6U841 1118 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 WAPLQ7Z5K2 1190 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 MYRIPQ8NFW9 859 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 PIBF1Q8WXW3 757 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 GPATCH3Q96I76 525 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 RGPD1P0DJD0 1748 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 FLT4P35916 1363 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 FAM83GA6ND36 823 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 APBB1O00213 710 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 XPCQ01831 940 aaPredicted RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 RRS1Q15050 365 aaKnown RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 RILPL2Q969X0 211 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 RBM27Q9P2N5 1060 aaKnown RBP7.36□□□□□ -1.23
HERC4-209ENST00000473533 USP25Q9UHP3 1055 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 AK9Q5TCS8 1911 aa7.36□□□□□ -1.23
HERC4-209ENST00000473533 SBNO1A3KN83 1393 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 HSPA4P34932 840 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 HIP1O00291 1037 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 UBTFL1P0CB47 393 aaPredicted RBP7.35□□□□□ -1.23
HERC4-209ENST00000473533 OTUD7AQ8TE49 926 aaPredicted RBP7.35□□□□□ -1.23
HERC4-209ENST00000473533 LIMCH1Q9UPQ0 1083 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 SMC3Q9UQE7 1217 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 ZSCAN22P10073 491 aaPredicted RBP7.35□□□□□ -1.23
HERC4-209ENST00000473533 PDCP20941 246 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 FKBP5Q13451 457 aaPredicted RBP7.35□□□□□ -1.23
HERC4-209ENST00000473533 PKP1Q13835 747 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 DCTN1Q14203 1278 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 KIF1BPQ96EK5 621 aa7.35□□□□□ -1.23
HERC4-209ENST00000473533 TTC41PQ6P2S7 1318 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 RAD50Q92878 1312 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 TOPAZ1Q8N9V7 1692 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 GTF2F1P35269 517 aaKnown RBP eCLIP7.34□□□□□ -1.233e-9■□□□□ 10.1
HERC4-209ENST00000473533 FLIIQ13045 1269 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 KDRP35968 1356 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 TUBGCP6Q96RT7 1819 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 CCDC94Q9BW85 323 aaPredicted RBP7.34□□□□□ -1.23
HERC4-209ENST00000473533 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.34□□□□□ -1.23
HERC4-209ENST00000473533 USP6P35125 1406 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 NRXN3Q9Y4C0 1643 aa7.34□□□□□ -1.23
HERC4-209ENST00000473533 CAVIN2O95810 425 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 HOXB7P09629 217 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 FBXO31Q5XUX0 539 aaPredicted RBP7.34□□□□□ -1.24
HERC4-209ENST00000473533 MCM10Q7L590 875 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 USP48Q86UV5 1035 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 ERC1Q8IUD2 1116 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 TM6SF1Q9BZW5 370 aa7.34□□□□□ -1.24
HERC4-209ENST00000473533 FMN2Q9NZ56 1722 aa7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms