RNA–Protein interactions for RNA: ENST00000472807.1

CHEK2-223, Transcript of checkpoint kinase 2, human

TSL 2

Gene CHEK2, Length 514 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHEK2-223	ENST00000472807	DCAF5	Q96JK2	942 aa		12.13	□□□□□ -0.47
CHEK2-223	ENST00000472807	ERVV-2	B6SEH9	535 aa		12.12	□□□□□ -0.47
CHEK2-223	ENST00000472807	C1orf141	Q5JVX7	400 aa		12.12	□□□□□ -0.47
CHEK2-223	ENST00000472807	AEBP1	Q8IUX7	1158 aa		12.12	□□□□□ -0.47
CHEK2-223	ENST00000472807	ASAP1	Q9ULH1	1129 aa		12.12	□□□□□ -0.47
CHEK2-223	ENST00000472807	UBR3	Q6ZT12	1888 aa		12.12	□□□□□ -0.47
CHEK2-223	ENST00000472807	KDR	P35968	1356 aa		12.11	□□□□□ -0.47
CHEK2-223	ENST00000472807	MSL1	Q68DK7	614 aa		12.11	□□□□□ -0.47
CHEK2-223	ENST00000472807	SULT6B1	Q6IMI4	303 aa		12.11	□□□□□ -0.47
CHEK2-223	ENST00000472807	KDM6A	O15550	1401 aa	Predicted RBP	12.11	□□□□□ -0.47
CHEK2-223	ENST00000472807	PHF14	O94880	888 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	SSFA2	P28290	1259 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	IL13	P35225	146 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	ATP6V1A	P38606	617 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	CC2D1B	Q5T0F9	858 aa	Known RBP	12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	LINC00116	Q8NCU8	138 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	ATG3	Q9NT62	314 aa		12.1	□□□□□ -0.47
CHEK2-223	ENST00000472807	CHD4	Q14839	1912 aa		12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	PER1	O15534	1290 aa	Predicted RBP	12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	MTHFS	P49914	203 aa		12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	CABP4	P57796	275 aa		12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	GPR162	Q16538	588 aa		12.09	□□□□□ -0.47
CHEK2-223	ENST00000472807	NPC1L1	Q9UHC9	1359 aa		12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	ZNF831	Q5JPB2	1677 aa		12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	GNPAT	O15228	680 aa		12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	ITPK1	Q13572	414 aa		12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	PELP1	Q8IZL8	1130 aa	Known RBP	12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	RBM42	Q9BTD8	480 aa	Known RBP	12.08	□□□□□ -0.48
CHEK2-223	ENST00000472807	AMIGO3	Q86WK7	504 aa		12.07	□□□□□ -0.48
CHEK2-223	ENST00000472807	NLGN2	Q8NFZ4	835 aa		12.07	□□□□□ -0.48
CHEK2-223	ENST00000472807	COL5A3	P25940	1745 aa	Predicted RBP	12.06	□□□□□ -0.48
CHEK2-223	ENST00000472807	SCN11A	Q9UI33	1791 aa		12.06	□□□□□ -0.48
CHEK2-223	ENST00000472807	DIAPH1	O60610	1272 aa	Known RBP	12.06	□□□□□ -0.48
CHEK2-223	ENST00000472807	AKAP4	Q5JQC9	854 aa		12.06	□□□□□ -0.48
CHEK2-223	ENST00000472807	HMOX1	P09601	288 aa		12.05	□□□□□ -0.48
CHEK2-223	ENST00000472807	CNGB1	Q14028	1251 aa	Predicted RBP	12.05	□□□□□ -0.48
CHEK2-223	ENST00000472807	RTCB	Q9Y3I0	505 aa	Known RBP	12.05	□□□□□ -0.48
CHEK2-223	ENST00000472807	CD2AP	Q9Y5K6	639 aa		12.05	□□□□□ -0.48
CHEK2-223	ENST00000472807	CNTNAP4	Q9C0A0	1308 aa		12.05	□□□□□ -0.48
CHEK2-223	ENST00000472807	SMIM5	Q71RC9	77 aa		12.04	□□□□□ -0.48
CHEK2-223	ENST00000472807	NFATC2IP	Q8NCF5	419 aa		12.04	□□□□□ -0.48
CHEK2-223	ENST00000472807	COL3A1	P02461	1466 aa	Predicted RBP	12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	MRC1	P22897	1456 aa		12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	VIRMA	Q69YN4	1812 aa	Known RBP	12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	PTCD1	O75127	700 aa	Known RBP	12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	TRAPPC3L	Q5T215	181 aa		12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	SLC4A9	Q96Q91	983 aa		12.03	□□□□□ -0.48
CHEK2-223	ENST00000472807	CIC	Q96RK0	1608 aa	Predicted RBP	12.02	□□□□□ -0.49
CHEK2-223	ENST00000472807	GRIN3B	O60391	1043 aa		12.02	□□□□□ -0.49
CHEK2-223	ENST00000472807	RC3H1	Q5TC82	1133 aa	Known RBP	12.02	□□□□□ -0.49
CHEK2-223	ENST00000472807	ZNF784	Q8NCA9	323 aa	Predicted RBP	12.02	□□□□□ -0.49
CHEK2-223	ENST00000472807	SLC52A2	Q9HAB3	445 aa		12.02	□□□□□ -0.49
CHEK2-223	ENST00000472807	TJP1	Q07157	1748 aa		12.01	□□□□□ -0.49
CHEK2-223	ENST00000472807	U2SURP	O15042	1029 aa	Known RBP	12.01	□□□□□ -0.49
CHEK2-223	ENST00000472807	YBX3	P16989	372 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
CHEK2-223	ENST00000472807	RFC4	P35249	363 aa		12.01	□□□□□ -0.49
CHEK2-223	ENST00000472807	MYH14	Q7Z406	1995 aa	Known RBP	12.01	□□□□□ -0.49
CHEK2-223	ENST00000472807	C4A	P0C0L4	1744 aa		12	□□□□□ -0.49
CHEK2-223	ENST00000472807	RNMT	O43148	476 aa	Known RBP	12	□□□□□ -0.49
CHEK2-223	ENST00000472807	RPS6KA4	O75676	772 aa		12	□□□□□ -0.49
CHEK2-223	ENST00000472807	MMP10	P09238	476 aa		12	□□□□□ -0.49
CHEK2-223	ENST00000472807	CRKL	P46109	303 aa	Known RBP	12	□□□□□ -0.49
CHEK2-223	ENST00000472807	MTHFSD	Q2M296	383 aa	Known RBP	12	□□□□□ -0.49
CHEK2-223	ENST00000472807	CFAP53	Q96M91	514 aa		12	□□□□□ -0.49
CHEK2-223	ENST00000472807	ADAMTS7	Q9UKP4	1686 aa		12	□□□□□ -0.49
CHEK2-223	ENST00000472807	NLGN1	Q8N2Q7	840 aa		11.99	□□□□□ -0.49
CHEK2-223	ENST00000472807	ARHGEF1	Q92888	912 aa	Known RBP	11.99	□□□□□ -0.49
CHEK2-223	ENST00000472807	LGR6	Q9HBX8	967 aa		11.99	□□□□□ -0.49
CHEK2-223	ENST00000472807	NPM3	O75607	178 aa	Known RBP	11.98	□□□□□ -0.49
CHEK2-223	ENST00000472807	GAS2L2	Q8NHY3	880 aa		11.98	□□□□□ -0.49
CHEK2-223	ENST00000472807	KIF13B	Q9NQT8	1826 aa		11.97	□□□□□ -0.49
CHEK2-223	ENST00000472807	KCP	Q6ZWJ8	1503 aa		11.97	□□□□□ -0.49
CHEK2-223	ENST00000472807	GYS1	P13807	737 aa		11.97	□□□□□ -0.49
CHEK2-223	ENST00000472807	C10orf71	Q711Q0	1435 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	GNAT3	A8MTJ3	354 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	SLC39A6	Q13433	755 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	TTC5	Q8N0Z6	440 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	CCDC87	Q9NVE4	849 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	NUDC	Q9Y266	331 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	PARP3	Q9Y6F1	533 aa		11.96	□□□□□ -0.49
CHEK2-223	ENST00000472807	UBR2	Q8IWV8	1755 aa		11.95	□□□□□ -0.5
CHEK2-223	ENST00000472807	USP42	Q9H9J4	1324 aa	Known RBP	11.95	□□□□□ -0.5
CHEK2-223	ENST00000472807	TEF	Q10587	303 aa		11.95	□□□□□ -0.5
CHEK2-223	ENST00000472807	DNAJC10	Q8IXB1	793 aa		11.95	□□□□□ -0.5
CHEK2-223	ENST00000472807	PXDNL	A1KZ92	1463 aa		11.95	□□□□□ -0.5
CHEK2-223	ENST00000472807	PPP2R1A	P30153	589 aa		11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	PRKAR2B	P31323	418 aa		11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	INTS5	Q6P9B9	1019 aa	Known RBP	11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	VSIG10	Q8N0Z9	540 aa		11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	SRP68	Q9UHB9	627 aa	Known RBP	11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	WWC3	Q9ULE0	1092 aa		11.94	□□□□□ -0.5
CHEK2-223	ENST00000472807	SOS1	Q07889	1333 aa	Predicted RBP	11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	SIPA1L3	O60292	1781 aa	Predicted RBP	11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	ZPR1	O75312	459 aa		11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	CYP19A1	P11511	503 aa	Predicted RBP	11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	TGFB2	P61812	414 aa		11.93	□□□□□ -0.5
CHEK2-223	ENST00000472807	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 156.7 ms