RNA–Protein interactions for RNA: ENST00000469223.5

HDAC6-217, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 796 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-217ENST00000469223 NBPF4Q96M43 638 aa18.08■□□□□ 0.48
HDAC6-217ENST00000469223 TNRC18O15417 2968 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-217ENST00000469223 RTL1A6NKG5 1358 aa18.07■□□□□ 0.48
HDAC6-217ENST00000469223 LOC102724428A0A0B4J2F2 783 aa18.07■□□□□ 0.48
HDAC6-217ENST00000469223 AMPHP49418 695 aa18.07■□□□□ 0.48
HDAC6-217ENST00000469223 SIK1P57059 783 aa18.07■□□□□ 0.48
HDAC6-217ENST00000469223 HDGFL2Q7Z4V5 671 aaPredicted RBP18.07■□□□□ 0.48
HDAC6-217ENST00000469223 SMG6Q86US8 1419 aaKnown RBP18.06■□□□□ 0.48
HDAC6-217ENST00000469223 PDE4DIPQ5VU43 2346 aa18.06■□□□□ 0.48
HDAC6-217ENST00000469223 TATP17735 454 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-217ENST00000469223 KCNA3P22001 575 aa18.06■□□□□ 0.48
HDAC6-217ENST00000469223 ITPK1Q13572 414 aa18.06■□□□□ 0.48
HDAC6-217ENST00000469223 TMC1Q8TDI8 760 aa18.06■□□□□ 0.48
HDAC6-217ENST00000469223 VIRMAQ69YN4 1812 aaKnown RBP18.06■□□□□ 0.48
HDAC6-217ENST00000469223 CYP27B1O15528 508 aa18.05■□□□□ 0.48
HDAC6-217ENST00000469223 PIGBQ92521 554 aa18.05■□□□□ 0.48
HDAC6-217ENST00000469223 MKRN1Q9UHC7 482 aaKnown RBP18.05■□□□□ 0.48
HDAC6-217ENST00000469223 FBLN1P23142 703 aa18.04■□□□□ 0.48
HDAC6-217ENST00000469223 DALRD3Q5D0E6 543 aaKnown RBP18.04■□□□□ 0.48
HDAC6-217ENST00000469223 PRDM10Q9NQV6 1147 aa18.04■□□□□ 0.48
HDAC6-217ENST00000469223 PIM2Q9P1W9 311 aa18.04■□□□□ 0.48
HDAC6-217ENST00000469223 KDM6AO15550 1401 aaPredicted RBP18.04■□□□□ 0.48
HDAC6-217ENST00000469223 DLEC1Q9Y238 1755 aa18.04■□□□□ 0.48
HDAC6-217ENST00000469223 ROCK2O75116 1388 aaKnown RBP18.04■□□□□ 0.48
HDAC6-217ENST00000469223 ZC3H4Q9UPT8 1303 aaKnown RBP18.03■□□□□ 0.48
HDAC6-217ENST00000469223 MYH14Q7Z406 1995 aaKnown RBP18.03■□□□□ 0.48
HDAC6-217ENST00000469223 TMF1P82094 1093 aa18.03■□□□□ 0.48
HDAC6-217ENST00000469223 RASSF7Q02833 373 aa18.03■□□□□ 0.48
HDAC6-217ENST00000469223 ZNF831Q5JPB2 1677 aa18.03■□□□□ 0.48
HDAC6-217ENST00000469223 VEGFAP15692 232 aaPredicted RBP18.02■□□□□ 0.48
HDAC6-217ENST00000469223 NLGN1Q8N2Q7 840 aa18.02■□□□□ 0.48
HDAC6-217ENST00000469223 PARP3Q9Y6F1 533 aa18.02■□□□□ 0.48
HDAC6-217ENST00000469223 SLC12A5Q9H2X9 1139 aa18.01■□□□□ 0.47
HDAC6-217ENST00000469223 ATP6V1AP38606 617 aa18■□□□□ 0.47
HDAC6-217ENST00000469223 COG3Q96JB2 828 aa18■□□□□ 0.47
HDAC6-217ENST00000469223 DICER1Q9UPY3 1922 aaKnown RBP18■□□□□ 0.47
HDAC6-217ENST00000469223 GYS1P13807 737 aa17.99■□□□□ 0.47
HDAC6-217ENST00000469223 ABHD8Q96I13 439 aa17.99■□□□□ 0.47
HDAC6-217ENST00000469223 TERF2IPQ9NYB0 399 aa17.99■□□□□ 0.47
HDAC6-217ENST00000469223 KDRP35968 1356 aa17.99■□□□□ 0.47
HDAC6-217ENST00000469223 AFDNP55196 1824 aaKnown RBP17.98■□□□□ 0.47
HDAC6-217ENST00000469223 GLTPD2A6NH11 291 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 CHRNA5P30532 468 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 CTCFP49711 727 aaPredicted RBP17.98■□□□□ 0.47
HDAC6-217ENST00000469223 RRS1Q15050 365 aaKnown RBP17.98■□□□□ 0.47
HDAC6-217ENST00000469223 TRAPPC3LQ5T215 181 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 AIDAQ96BJ3 306 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 CREBZFQ9NS37 354 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 ASAP1Q9ULH1 1129 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 RTCBQ9Y3I0 505 aaKnown RBP17.98■□□□□ 0.47
HDAC6-217ENST00000469223 CNTNAP1P78357 1384 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 KIF20BQ96Q89 1820 aa17.98■□□□□ 0.47
HDAC6-217ENST00000469223 TMOD3Q9NYL9 352 aa17.96■□□□□ 0.47
HDAC6-217ENST00000469223 LBX1P52954 281 aa17.95■□□□□ 0.46
HDAC6-217ENST00000469223 MLLT1Q03111 559 aaPredicted RBP17.95■□□□□ 0.46
HDAC6-217ENST00000469223 ARHGEF1Q92888 912 aaKnown RBP17.95■□□□□ 0.46
HDAC6-217ENST00000469223 ADRA2BP18089 450 aa17.94■□□□□ 0.46
HDAC6-217ENST00000469223 LMNB1P20700 586 aa17.94■□□□□ 0.46
HDAC6-217ENST00000469223 RFC4P35249 363 aa17.93■□□□□ 0.46
HDAC6-217ENST00000469223 POTECB2RU33 542 aa17.92■□□□□ 0.46
HDAC6-217ENST00000469223 DDR1Q08345 913 aa17.92■□□□□ 0.46
HDAC6-217ENST00000469223 L3MBTL2Q969R5 705 aa17.92■□□□□ 0.46
HDAC6-217ENST00000469223 INSRP06213 1382 aa17.91■□□□□ 0.46
HDAC6-217ENST00000469223 ADAMTS7Q9UKP4 1686 aa17.91■□□□□ 0.46
HDAC6-217ENST00000469223 NKX1-1Q15270 411 aaPredicted RBP17.91■□□□□ 0.46
HDAC6-217ENST00000469223 NCAPD2Q15021 1401 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 TJP1Q07157 1748 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 CHADLQ6NUI6 762 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 ATG3Q9NT62 314 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 CNTNAP4Q9C0A0 1308 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 FLT4P35916 1363 aa17.9■□□□□ 0.46
HDAC6-217ENST00000469223 NRXN2Q9P2S2 1712 aa17.89■□□□□ 0.46
HDAC6-217ENST00000469223 FER1L6Q2WGJ9 1857 aa17.89■□□□□ 0.45
HDAC6-217ENST00000469223 HSP90AB2PQ58FF8 381 aa17.89■□□□□ 0.45
HDAC6-217ENST00000469223 SLC4A9Q96Q91 983 aa17.89■□□□□ 0.45
HDAC6-217ENST00000469223 SRP68Q9UHB9 627 aaKnown RBP17.89■□□□□ 0.45
HDAC6-217ENST00000469223 ANKRD26Q9UPS8 1709 aa17.89■□□□□ 0.45
HDAC6-217ENST00000469223 CACNA1SQ13698 1873 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 CCDC85CA6NKD9 419 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 POTEIP0CG38 1075 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 POTEJP0CG39 1038 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 HSPA8P11142 646 aaKnown RBP17.88■□□□□ 0.45
HDAC6-217ENST00000469223 VEGFBP49765 207 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 FKBP8Q14318 412 aa17.88■□□□□ 0.45
HDAC6-217ENST00000469223 RBM42Q9BTD8 480 aaKnown RBP17.87■□□□□ 0.45
HDAC6-217ENST00000469223 WBP1LQ9NX94 342 aa17.87■□□□□ 0.45
HDAC6-217ENST00000469223 THSD7BQ9C0I4 1608 aa17.87■□□□□ 0.45
HDAC6-217ENST00000469223 RPS6KA4O75676 772 aa17.86■□□□□ 0.45
HDAC6-217ENST00000469223 RC3H1Q5TC82 1133 aaKnown RBP17.86■□□□□ 0.45
HDAC6-217ENST00000469223 SPG7Q9UQ90 795 aa17.86■□□□□ 0.45
HDAC6-217ENST00000469223 USP42Q9H9J4 1324 aaKnown RBP17.86■□□□□ 0.45
HDAC6-217ENST00000469223 NFKBIEO00221 500 aa17.85■□□□□ 0.45
HDAC6-217ENST00000469223 COL11A2P13942 1736 aaPredicted RBP17.85■□□□□ 0.45
HDAC6-217ENST00000469223 SCN4AP35499 1836 aa17.85■□□□□ 0.45
HDAC6-217ENST00000469223 RGS19P49795 217 aa17.85■□□□□ 0.45
HDAC6-217ENST00000469223 PASKQ96RG2 1323 aa17.84■□□□□ 0.45
HDAC6-217ENST00000469223 POLRMTO00411 1230 aaKnown RBP17.84■□□□□ 0.45
HDAC6-217ENST00000469223 GGNBP2Q9H3C7 697 aa17.83■□□□□ 0.44
HDAC6-217ENST00000469223 ANKRD31Q8N7Z5 1873 aa17.82■□□□□ 0.44
HDAC6-217ENST00000469223 KIF24Q5T7B8 1368 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms