RNA–Protein interactions for RNA: ENST00000467378.1

USP11-205, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-205ENST00000467378 AK7Q96M32 723 aa25.72■■□□□ 1.71
USP11-205ENST00000467378 PRKRIP1Q9H875 184 aaPredicted RBP25.72■■□□□ 1.71
USP11-205ENST00000467378 PHF14O94880 888 aa25.7■■□□□ 1.7
USP11-205ENST00000467378 MPRIPQ6WCQ1 1025 aa25.69■■□□□ 1.7
USP11-205ENST00000467378 RAPGEF4Q8WZA2 1011 aa25.69■■□□□ 1.7
USP11-205ENST00000467378 DIAPH1O60610 1272 aaKnown RBP25.68■■□□□ 1.7
USP11-205ENST00000467378 DNAJC5GQ8N7S2 189 aa25.68■■□□□ 1.7
USP11-205ENST00000467378 WDR90Q96KV7 1748 aa25.68■■□□□ 1.7
USP11-205ENST00000467378 MYBBP1AQ9BQG0 1328 aaKnown RBP25.67■■□□□ 1.7
USP11-205ENST00000467378 CICQ96RK0 1608 aaPredicted RBP25.67■■□□□ 1.7
USP11-205ENST00000467378 TOMM70O94826 608 aa25.67■■□□□ 1.7
USP11-205ENST00000467378 TATP17735 454 aaPredicted RBP25.66■■□□□ 1.7
USP11-205ENST00000467378 SMIM5Q71RC9 77 aa25.66■■□□□ 1.7
USP11-205ENST00000467378 AMIGO3Q86WK7 504 aa25.66■■□□□ 1.7
USP11-205ENST00000467378 CFAP53Q96M91 514 aa25.66■■□□□ 1.7
USP11-205ENST00000467378 N4BP2Q86UW6 1770 aaPredicted RBP25.66■■□□□ 1.7
USP11-205ENST00000467378 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.65■■□□□ 1.7
USP11-205ENST00000467378 PCDH11XQ9BZA7 1347 aa25.63■■□□□ 1.69
USP11-205ENST00000467378 PCDH11YQ9BZA8 1340 aa25.63■■□□□ 1.69
USP11-205ENST00000467378 SMARCC1Q92922 1105 aaPredicted RBP25.63■■□□□ 1.69
USP11-205ENST00000467378 KIF13BQ9NQT8 1826 aa25.6■■□□□ 1.69
USP11-205ENST00000467378 CAPN15O75808 1086 aa25.6■■□□□ 1.69
USP11-205ENST00000467378 PKD1L3Q7Z443 1732 aa25.6■■□□□ 1.69
USP11-205ENST00000467378 KDRP35968 1356 aa25.59■■□□□ 1.69
USP11-205ENST00000467378 SSFA2P28290 1259 aa25.59■■□□□ 1.69
USP11-205ENST00000467378 SULT6B1Q6IMI4 303 aa25.59■■□□□ 1.69
USP11-205ENST00000467378 AEBP1Q8IUX7 1158 aa25.59■■□□□ 1.69
USP11-205ENST00000467378 KIAA1551Q9HCM1 1747 aa25.59■■□□□ 1.69
USP11-205ENST00000467378 ANP32CO43423 234 aa25.58■■□□□ 1.69
USP11-205ENST00000467378 NMRK2Q9NPI5 230 aa25.58■■□□□ 1.69
USP11-205ENST00000467378 BCS1LQ9Y276 419 aa25.57■■□□□ 1.68
USP11-205ENST00000467378 PXDNLA1KZ92 1463 aa25.56■■□□□ 1.68
USP11-205ENST00000467378 U2SURPO15042 1029 aaKnown RBP25.56■■□□□ 1.68
USP11-205ENST00000467378 COL13A1Q5TAT6 717 aaPredicted RBP25.56■■□□□ 1.68
USP11-205ENST00000467378 NUDCQ9Y266 331 aa25.56■■□□□ 1.68
USP11-205ENST00000467378 CYP27B1O15528 508 aa25.55■■□□□ 1.68
USP11-205ENST00000467378 ARHGAP27Q6ZUM4 889 aa25.55■■□□□ 1.68
USP11-205ENST00000467378 MMP10P09238 476 aa25.54■■□□□ 1.68
USP11-205ENST00000467378 HMOX1P09601 288 aa25.54■■□□□ 1.68
USP11-205ENST00000467378 C16orf71Q8IYS4 520 aaPredicted RBP25.54■■□□□ 1.68
USP11-205ENST00000467378 LINC00116Q8NCU8 138 aa25.54■■□□□ 1.68
USP11-205ENST00000467378 PLEKHG2Q9H7P9 1386 aa25.54■■□□□ 1.68
USP11-205ENST00000467378 GNPATO15228 680 aa25.53■■□□□ 1.68
USP11-205ENST00000467378 HTRA3P83110 453 aa25.53■■□□□ 1.68
USP11-205ENST00000467378 PIGBQ92521 554 aa25.53■■□□□ 1.68
USP11-205ENST00000467378 KLRG1Q96E93 195 aa25.53■■□□□ 1.68
USP11-205ENST00000467378 LOC102724428A0A0B4J2F2 783 aa25.52■■□□□ 1.68
USP11-205ENST00000467378 SIK1P57059 783 aa25.52■■□□□ 1.68
USP11-205ENST00000467378 RBM46Q8TBY0 533 aaKnown RBP25.52■■□□□ 1.68
USP11-205ENST00000467378 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.52■■□□□ 1.68
USP11-205ENST00000467378 BRCA1P38398 1863 aaKnown RBP25.51■■□□□ 1.67
USP11-205ENST00000467378 A0A0G2JLW4 131 aa25.51■■□□□ 1.67
USP11-205ENST00000467378 TGFB2P61812 414 aa25.5■■□□□ 1.67
USP11-205ENST00000467378 U2AF1L5P0DN76 240 aaPredicted RBP25.49■■□□□ 1.67
USP11-205ENST00000467378 U2AF1Q01081 240 aaKnown RBP eCLIP25.49■■□□□ 1.67
USP11-205ENST00000467378 TNS4Q8IZW8 715 aa25.49■■□□□ 1.67
USP11-205ENST00000467378 SPG7Q9UQ90 795 aa25.49■■□□□ 1.67
USP11-205ENST00000467378 ARFGEF1Q9Y6D6 1849 aa25.49■■□□□ 1.67
USP11-205ENST00000467378 FCHSD2O94868 740 aa25.48■■□□□ 1.67
USP11-205ENST00000467378 JMYQ8N9B5 988 aa25.48■■□□□ 1.67
USP11-205ENST00000467378 CCDC184Q52MB2 194 aa25.47■■□□□ 1.67
USP11-205ENST00000467378 PLEKHO1Q53GL0 409 aaPredicted RBP25.47■■□□□ 1.67
USP11-205ENST00000467378 RSPH6AQ9H0K4 717 aa25.47■■□□□ 1.67
USP11-205ENST00000467378 ATP6V1AP38606 617 aa25.46■■□□□ 1.67
USP11-205ENST00000467378 ITPK1Q13572 414 aa25.46■■□□□ 1.67
USP11-205ENST00000467378 AMOTQ4VCS5 1084 aa25.46■■□□□ 1.67
USP11-205ENST00000467378 FSTL1Q12841 308 aa25.45■■□□□ 1.66
USP11-205ENST00000467378 TMOD3Q9NYL9 352 aa25.45■■□□□ 1.66
USP11-205ENST00000467378 C10orf71Q711Q0 1435 aa25.45■■□□□ 1.66
USP11-205ENST00000467378 C4AP0C0L4 1744 aa25.44■■□□□ 1.66
USP11-205ENST00000467378 DPEP1P16444 411 aa25.44■■□□□ 1.66
USP11-205ENST00000467378 C9orf131Q5VYM1 1079 aa25.44■■□□□ 1.66
USP11-205ENST00000467378 CCDC87Q9NVE4 849 aa25.43■■□□□ 1.66
USP11-205ENST00000467378 ASAP1Q9ULH1 1129 aa25.43■■□□□ 1.66
USP11-205ENST00000467378 PHKG2P15735 406 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 PRKAR2BP31323 418 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 PRELPP51888 382 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 NKX1-1Q15270 411 aaPredicted RBP25.42■■□□□ 1.66
USP11-205ENST00000467378 DIEXFQ68CQ4 756 aaKnown RBP25.42■■□□□ 1.66
USP11-205ENST00000467378 IFNL2Q8IZJ0 200 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 NLGN1Q8N2Q7 840 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 KCPQ6ZWJ8 1503 aa25.42■■□□□ 1.66
USP11-205ENST00000467378 VIRMAQ69YN4 1812 aaKnown RBP25.42■■□□□ 1.66
USP11-205ENST00000467378 TRAPPC3LQ5T215 181 aa25.41■■□□□ 1.66
USP11-205ENST00000467378 TNRC6CQ9HCJ0 1690 aaKnown RBP25.41■■□□□ 1.66
USP11-205ENST00000467378 KDM2BQ8NHM5 1336 aa25.4■■□□□ 1.66
USP11-205ENST00000467378 MTHFSDQ2M296 383 aaKnown RBP25.4■■□□□ 1.66
USP11-205ENST00000467378 RTCBQ9Y3I0 505 aaKnown RBP25.4■■□□□ 1.66
USP11-205ENST00000467378 SBF1O95248 1867 aa25.39■■□□□ 1.66
USP11-205ENST00000467378 ZNF530Q6P9A1 599 aaPredicted RBP25.39■■□□□ 1.66
USP11-205ENST00000467378 PHACTR3Q96KR7 559 aa25.39■■□□□ 1.66
USP11-205ENST00000467378 PLEKHF1Q96S99 279 aa25.38■■□□□ 1.65
USP11-205ENST00000467378 RRAGCQ9HB90 399 aa25.38■■□□□ 1.65
USP11-205ENST00000467378 PARP3Q9Y6F1 533 aa25.38■■□□□ 1.65
USP11-205ENST00000467378 SCN11AQ9UI33 1791 aa25.36■■□□□ 1.65
USP11-205ENST00000467378 WDR43Q15061 677 aaKnown RBP eCLIP25.36■■□□□ 1.65
USP11-205ENST00000467378 RNF181Q9P0P0 153 aa25.36■■□□□ 1.65
USP11-205ENST00000467378 ADAMTS8Q9UP79 889 aa25.36■■□□□ 1.65
USP11-205ENST00000467378 COL5A3P25940 1745 aaPredicted RBP25.35■■□□□ 1.65
USP11-205ENST00000467378 AKAP4Q5JQC9 854 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms