RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ARXQ96QS3 562 aa29.41■■■□□ 2.3
LIME1-203ENST00000465591 CABP4P57796 275 aa29.4■■■□□ 2.3
LIME1-203ENST00000465591 SLC4A9Q96Q91 983 aa29.4■■■□□ 2.3
LIME1-203ENST00000465591 MSH5O43196 834 aa29.38■■■□□ 2.29
LIME1-203ENST00000465591 ATP6V1AP38606 617 aa29.38■■■□□ 2.29
LIME1-203ENST00000465591 SYT17Q9BSW7 474 aa29.38■■■□□ 2.29
LIME1-203ENST00000465591 U2SURPO15042 1029 aaKnown RBP29.37■■■□□ 2.29
LIME1-203ENST00000465591 PPP2R1AP30153 589 aa29.37■■■□□ 2.29
LIME1-203ENST00000465591 MTHFSDQ2M296 383 aaKnown RBP29.37■■■□□ 2.29
LIME1-203ENST00000465591 AKAP4Q5JQC9 854 aa29.37■■■□□ 2.29
LIME1-203ENST00000465591 AK7Q96M32 723 aa29.37■■■□□ 2.29
LIME1-203ENST00000465591 ZNF831Q5JPB2 1677 aa29.37■■■□□ 2.29
LIME1-203ENST00000465591 NFATC2IPQ8NCF5 419 aa29.36■■■□□ 2.29
LIME1-203ENST00000465591 LGR6Q9HBX8 967 aa29.36■■■□□ 2.29
LIME1-203ENST00000465591 MSL1Q68DK7 614 aa29.35■■■□□ 2.29
LIME1-203ENST00000465591 ADAMTS7Q9UKP4 1686 aa29.34■■■□□ 2.29
LIME1-203ENST00000465591 COL5A3P25940 1745 aaPredicted RBP29.34■■■□□ 2.29
LIME1-203ENST00000465591 RBM42Q9BTD8 480 aaKnown RBP29.34■■■□□ 2.29
LIME1-203ENST00000465591 HMGB2P26583 209 aaKnown RBP29.33■■■□□ 2.29
LIME1-203ENST00000465591 PHF14O94880 888 aa29.32■■■□□ 2.28
LIME1-203ENST00000465591 POLD1P28340 1107 aa29.32■■■□□ 2.28
LIME1-203ENST00000465591 MYH14Q7Z406 1995 aaKnown RBP29.32■■■□□ 2.28
LIME1-203ENST00000465591 MRC1P22897 1456 aa29.31■■■□□ 2.28
LIME1-203ENST00000465591 MAP3K5Q99683 1374 aa29.31■■■□□ 2.28
LIME1-203ENST00000465591 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.31■■■□□ 2.28
LIME1-203ENST00000465591 RNMTO43148 476 aaKnown RBP29.31■■■□□ 2.28
LIME1-203ENST00000465591 FLAD1Q8NFF5 587 aa29.31■■■□□ 2.28
LIME1-203ENST00000465591 GNPATO15228 680 aa29.29■■■□□ 2.28
LIME1-203ENST00000465591 CFAP53Q96M91 514 aa29.29■■■□□ 2.28
LIME1-203ENST00000465591 SLC52A2Q9HAB3 445 aa29.29■■■□□ 2.28
LIME1-203ENST00000465591 PTCD1O75127 700 aaKnown RBP29.28■■■□□ 2.28
LIME1-203ENST00000465591 TJP1Q07157 1748 aa29.28■■■□□ 2.28
LIME1-203ENST00000465591 SSFA2P28290 1259 aa29.27■■■□□ 2.28
LIME1-203ENST00000465591 KLHL34Q8N239 644 aa29.26■■■□□ 2.27
LIME1-203ENST00000465591 RSPH6AQ9H0K4 717 aa29.25■■■□□ 2.27
LIME1-203ENST00000465591 CICQ96RK0 1608 aaPredicted RBP29.24■■■□□ 2.27
LIME1-203ENST00000465591 PHACTR3Q96KR7 559 aa29.24■■■□□ 2.27
LIME1-203ENST00000465591 PRKAR2BP31323 418 aa29.23■■■□□ 2.27
LIME1-203ENST00000465591 SLC39A6Q13433 755 aa29.22■■■□□ 2.27
LIME1-203ENST00000465591 CNTNAP4Q9C0A0 1308 aa29.21■■■□□ 2.27
LIME1-203ENST00000465591 RC3H1Q5TC82 1133 aaKnown RBP29.21■■■□□ 2.27
LIME1-203ENST00000465591 NLGN2Q8NFZ4 835 aa29.21■■■□□ 2.27
LIME1-203ENST00000465591 KCPQ6ZWJ8 1503 aa29.2■■■□□ 2.27
LIME1-203ENST00000465591 GAS2L2Q8NHY3 880 aa29.2■■■□□ 2.26
LIME1-203ENST00000465591 NUDCQ9Y266 331 aa29.2■■■□□ 2.26
LIME1-203ENST00000465591 SIPA1L3O60292 1781 aaPredicted RBP29.19■■■□□ 2.26
LIME1-203ENST00000465591 DCAF8L1A6NGE4 600 aa29.19■■■□□ 2.26
LIME1-203ENST00000465591 U2AF1L5P0DN76 240 aaPredicted RBP29.19■■■□□ 2.26
LIME1-203ENST00000465591 U2AF1Q01081 240 aaKnown RBP eCLIP29.19■■■□□ 2.26
LIME1-203ENST00000465591 IL17REQ8NFR9 667 aa29.19■■■□□ 2.26
LIME1-203ENST00000465591 C4AP0C0L4 1744 aa29.18■■■□□ 2.26
LIME1-203ENST00000465591 RTCBQ9Y3I0 505 aaKnown RBP29.18■■■□□ 2.26
LIME1-203ENST00000465591 UBR2Q8IWV8 1755 aa29.18■■■□□ 2.26
LIME1-203ENST00000465591 GNAT3A8MTJ3 354 aa29.17■■■□□ 2.26
LIME1-203ENST00000465591 RPS6KA4O75676 772 aa29.16■■■□□ 2.26
LIME1-203ENST00000465591 CRKLP46109 303 aaKnown RBP29.16■■■□□ 2.26
LIME1-203ENST00000465591 UTRNP46939 3433 aa29.15■■■□□ 2.26
LIME1-203ENST00000465591 DDX10Q13206 875 aaKnown RBP29.15■■■□□ 2.26
LIME1-203ENST00000465591 TRAPPC3LQ5T215 181 aa29.15■■■□□ 2.26
LIME1-203ENST00000465591 DNAJC10Q8IXB1 793 aa29.15■■■□□ 2.26
LIME1-203ENST00000465591 ARHGEF1Q92888 912 aaKnown RBP29.15■■■□□ 2.26
LIME1-203ENST00000465591 FCHSD2O94868 740 aa29.12■■■□□ 2.25
LIME1-203ENST00000465591 INTS5Q6P9B9 1019 aaKnown RBP29.12■■■□□ 2.25
LIME1-203ENST00000465591 ADRA2BP18089 450 aa29.11■■■□□ 2.25
LIME1-203ENST00000465591 CEMIPQ8WUJ3 1361 aa29.11■■■□□ 2.25
LIME1-203ENST00000465591 YY1P25490 414 aa29.1■■■□□ 2.25
LIME1-203ENST00000465591 CYP19A1P11511 503 aaPredicted RBP29.08■■■□□ 2.25
LIME1-203ENST00000465591 TEFQ10587 303 aa29.08■■■□□ 2.25
LIME1-203ENST00000465591 CHD4Q14839 1912 aa29.08■■■□□ 2.25
LIME1-203ENST00000465591 MMP10P09238 476 aa29.07■■■□□ 2.24
LIME1-203ENST00000465591 GYS1P13807 737 aa29.07■■■□□ 2.24
LIME1-203ENST00000465591 CD2APQ9Y5K6 639 aa29.07■■■□□ 2.24
LIME1-203ENST00000465591 RFC4P35249 363 aa29.06■■■□□ 2.24
LIME1-203ENST00000465591 GPR162Q16538 588 aa29.06■■■□□ 2.24
LIME1-203ENST00000465591 CCDC87Q9NVE4 849 aa29.06■■■□□ 2.24
LIME1-203ENST00000465591 SRP68Q9UHB9 627 aaKnown RBP29.06■■■□□ 2.24
LIME1-203ENST00000465591 GOLGB1Q14789 3259 aaKnown RBP29.05■■■□□ 2.24
LIME1-203ENST00000465591 DLG5Q8TDM6 1919 aa29.05■■■□□ 2.24
LIME1-203ENST00000465591 ZNF496Q96IT1 587 aaPredicted RBP29.05■■■□□ 2.24
LIME1-203ENST00000465591 ZNF790Q6PG37 636 aa29.04■■■□□ 2.24
LIME1-203ENST00000465591 PELP1Q8IZL8 1130 aaKnown RBP29.04■■■□□ 2.24
LIME1-203ENST00000465591 KCNQ3O43525 872 aa29.03■■■□□ 2.24
LIME1-203ENST00000465591 YBX3P16989 372 aaKnown RBP eCLIP29.03■■■□□ 2.24
LIME1-203ENST00000465591 RALBP1Q15311 655 aa29.03■■■□□ 2.24
LIME1-203ENST00000465591 MCM10Q7L590 875 aa29.03■■■□□ 2.24
LIME1-203ENST00000465591 TTC5Q8N0Z6 440 aa29.03■■■□□ 2.24
LIME1-203ENST00000465591 VSIG10Q8N0Z9 540 aa29.03■■■□□ 2.24
LIME1-203ENST00000465591 SOS1Q07889 1333 aaPredicted RBP29.02■■■□□ 2.24
LIME1-203ENST00000465591 DCTN1Q14203 1278 aa29.02■■■□□ 2.24
LIME1-203ENST00000465591 NLGN1Q8N2Q7 840 aa29.02■■■□□ 2.24
LIME1-203ENST00000465591 ZBTB1Q9Y2K1 713 aa29.02■■■□□ 2.24
LIME1-203ENST00000465591 KIF13BQ9NQT8 1826 aa29.01■■■□□ 2.24
LIME1-203ENST00000465591 USP42Q9H9J4 1324 aaKnown RBP29.01■■■□□ 2.23
LIME1-203ENST00000465591 PLEKHF1Q96S99 279 aa29■■■□□ 2.23
LIME1-203ENST00000465591 HEG1Q9ULI3 1381 aa29■■■□□ 2.23
LIME1-203ENST00000465591 KIAA1551Q9HCM1 1747 aa28.99■■■□□ 2.23
LIME1-203ENST00000465591 FKBP8Q14318 412 aa28.98■■■□□ 2.23
LIME1-203ENST00000465591 BTBD11A6QL63 1104 aa28.97■■■□□ 2.23
LIME1-203ENST00000465591 RTF1Q92541 710 aaKnown RBP28.97■■■□□ 2.23
LIME1-203ENST00000465591 COL15A1P39059 1388 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms