RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 ATG3Q9NT62 314 aa17.45■□□□□ 0.38
CHD3-206ENST00000452447 KDRP35968 1356 aa17.45■□□□□ 0.38
CHD3-206ENST00000452447 CABP4P57796 275 aa17.45■□□□□ 0.38
CHD3-206ENST00000452447 MSL1Q68DK7 614 aa17.44■□□□□ 0.38
CHD3-206ENST00000452447 NPC1L1Q9UHC9 1359 aa17.43■□□□□ 0.38
CHD3-206ENST00000452447 DIAPH1O60610 1272 aaKnown RBP17.43■□□□□ 0.38
CHD3-206ENST00000452447 PHF14O94880 888 aa17.43■□□□□ 0.38
CHD3-206ENST00000452447 LINC00116Q8NCU8 138 aa17.43■□□□□ 0.38
CHD3-206ENST00000452447 UBR3Q6ZT12 1888 aa17.43■□□□□ 0.38
CHD3-206ENST00000452447 RBM42Q9BTD8 480 aaKnown RBP17.42■□□□□ 0.38
CHD3-206ENST00000452447 KDM6AO15550 1401 aaPredicted RBP17.42■□□□□ 0.38
CHD3-206ENST00000452447 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.41■□□□□ 0.38
CHD3-206ENST00000452447 HMOX1P09601 288 aa17.41■□□□□ 0.38
CHD3-206ENST00000452447 SSFA2P28290 1259 aa17.41■□□□□ 0.38
CHD3-206ENST00000452447 ITPK1Q13572 414 aa17.41■□□□□ 0.38
CHD3-206ENST00000452447 GNPATO15228 680 aa17.4■□□□□ 0.38
CHD3-206ENST00000452447 GPR162Q16538 588 aa17.4■□□□□ 0.38
CHD3-206ENST00000452447 NFATC2IPQ8NCF5 419 aa17.4■□□□□ 0.38
CHD3-206ENST00000452447 CHD4Q14839 1912 aa17.39■□□□□ 0.37
CHD3-206ENST00000452447 AKAP4Q5JQC9 854 aa17.39■□□□□ 0.37
CHD3-206ENST00000452447 AMIGO3Q86WK7 504 aa17.39■□□□□ 0.37
CHD3-206ENST00000452447 SCN11AQ9UI33 1791 aa17.38■□□□□ 0.37
CHD3-206ENST00000452447 SMIM5Q71RC9 77 aa17.38■□□□□ 0.37
CHD3-206ENST00000452447 PELP1Q8IZL8 1130 aaKnown RBP17.37■□□□□ 0.37
CHD3-206ENST00000452447 U2SURPO15042 1029 aaKnown RBP17.36■□□□□ 0.37
CHD3-206ENST00000452447 PTCD1O75127 700 aaKnown RBP17.36■□□□□ 0.37
CHD3-206ENST00000452447 NLGN2Q8NFZ4 835 aa17.36■□□□□ 0.37
CHD3-206ENST00000452447 SLC4A9Q96Q91 983 aa17.36■□□□□ 0.37
CHD3-206ENST00000452447 RTCBQ9Y3I0 505 aaKnown RBP17.36■□□□□ 0.37
CHD3-206ENST00000452447 ZNF831Q5JPB2 1677 aa17.36■□□□□ 0.37
CHD3-206ENST00000452447 TRAPPC3LQ5T215 181 aa17.35■□□□□ 0.37
CHD3-206ENST00000452447 VIRMAQ69YN4 1812 aaKnown RBP17.35■□□□□ 0.37
CHD3-206ENST00000452447 MTHFSDQ2M296 383 aaKnown RBP17.34■□□□□ 0.37
CHD3-206ENST00000452447 RC3H1Q5TC82 1133 aaKnown RBP17.34■□□□□ 0.37
CHD3-206ENST00000452447 CFAP53Q96M91 514 aa17.34■□□□□ 0.37
CHD3-206ENST00000452447 SLC52A2Q9HAB3 445 aa17.33■□□□□ 0.37
CHD3-206ENST00000452447 LGR6Q9HBX8 967 aa17.33■□□□□ 0.37
CHD3-206ENST00000452447 CD2APQ9Y5K6 639 aa17.33■□□□□ 0.37
CHD3-206ENST00000452447 COL5A3P25940 1745 aaPredicted RBP17.33■□□□□ 0.36
CHD3-206ENST00000452447 CNTNAP4Q9C0A0 1308 aa17.32■□□□□ 0.36
CHD3-206ENST00000452447 MYH14Q7Z406 1995 aaKnown RBP17.32■□□□□ 0.36
CHD3-206ENST00000452447 RNMTO43148 476 aaKnown RBP17.32■□□□□ 0.36
CHD3-206ENST00000452447 COL3A1P02461 1466 aaPredicted RBP17.32■□□□□ 0.36
CHD3-206ENST00000452447 ADRA2BP18089 450 aa17.32■□□□□ 0.36
CHD3-206ENST00000452447 RPS6KA4O75676 772 aa17.31■□□□□ 0.36
CHD3-206ENST00000452447 RFC4P35249 363 aa17.3■□□□□ 0.36
CHD3-206ENST00000452447 ARHGEF1Q92888 912 aaKnown RBP17.3■□□□□ 0.36
CHD3-206ENST00000452447 GRIN3BO60391 1043 aa17.29■□□□□ 0.36
CHD3-206ENST00000452447 NLGN1Q8N2Q7 840 aa17.29■□□□□ 0.36
CHD3-206ENST00000452447 GAS2L2Q8NHY3 880 aa17.29■□□□□ 0.36
CHD3-206ENST00000452447 NUDCQ9Y266 331 aa17.29■□□□□ 0.36
CHD3-206ENST00000452447 MMP10P09238 476 aa17.28■□□□□ 0.36
CHD3-206ENST00000452447 CRKLP46109 303 aaKnown RBP17.28■□□□□ 0.36
CHD3-206ENST00000452447 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
CHD3-206ENST00000452447 SLC39A6Q13433 755 aa17.28■□□□□ 0.36
CHD3-206ENST00000452447 MRC1P22897 1456 aa17.27■□□□□ 0.36
CHD3-206ENST00000452447 GNAT3A8MTJ3 354 aa17.27■□□□□ 0.35
CHD3-206ENST00000452447 YBX3P16989 372 aaKnown RBP eCLIP17.27■□□□□ 0.35
CHD3-206ENST00000452447 ZNF784Q8NCA9 323 aaPredicted RBP17.26■□□□□ 0.35
CHD3-206ENST00000452447 PRKAR2BP31323 418 aa17.25■□□□□ 0.35
CHD3-206ENST00000452447 TEFQ10587 303 aa17.25■□□□□ 0.35
CHD3-206ENST00000452447 DNAJC10Q8IXB1 793 aa17.25■□□□□ 0.35
CHD3-206ENST00000452447 TJP1Q07157 1748 aa17.25■□□□□ 0.35
CHD3-206ENST00000452447 ADAMTS7Q9UKP4 1686 aa17.25■□□□□ 0.35
CHD3-206ENST00000452447 U2AF1L5P0DN76 240 aaPredicted RBP17.24■□□□□ 0.35
CHD3-206ENST00000452447 GYS1P13807 737 aa17.24■□□□□ 0.35
CHD3-206ENST00000452447 U2AF1Q01081 240 aaKnown RBP eCLIP17.24■□□□□ 0.35
CHD3-206ENST00000452447 TTC5Q8N0Z6 440 aa17.24■□□□□ 0.35
CHD3-206ENST00000452447 CICQ96RK0 1608 aaPredicted RBP17.24■□□□□ 0.35
CHD3-206ENST00000452447 C4AP0C0L4 1744 aa17.24■□□□□ 0.35
CHD3-206ENST00000452447 INTS5Q6P9B9 1019 aaKnown RBP17.23■□□□□ 0.35
CHD3-206ENST00000452447 RSPH6AQ9H0K4 717 aa17.23■□□□□ 0.35
CHD3-206ENST00000452447 CCDC87Q9NVE4 849 aa17.23■□□□□ 0.35
CHD3-206ENST00000452447 IL17REQ8NFR9 667 aa17.23■□□□□ 0.35
CHD3-206ENST00000452447 PARP3Q9Y6F1 533 aa17.23■□□□□ 0.35
CHD3-206ENST00000452447 VSIG10Q8N0Z9 540 aa17.22■□□□□ 0.35
CHD3-206ENST00000452447 PHACTR3Q96KR7 559 aa17.22■□□□□ 0.35
CHD3-206ENST00000452447 KCPQ6ZWJ8 1503 aa17.21■□□□□ 0.35
CHD3-206ENST00000452447 CYP19A1P11511 503 aaPredicted RBP17.21■□□□□ 0.35
CHD3-206ENST00000452447 SRP68Q9UHB9 627 aaKnown RBP17.21■□□□□ 0.35
CHD3-206ENST00000452447 WWC3Q9ULE0 1092 aa17.21■□□□□ 0.35
CHD3-206ENST00000452447 USP42Q9H9J4 1324 aaKnown RBP17.21■□□□□ 0.35
CHD3-206ENST00000452447 ZPR1O75312 459 aa17.2■□□□□ 0.34
CHD3-206ENST00000452447 FCHSD2O94868 740 aa17.2■□□□□ 0.34
CHD3-206ENST00000452447 UBR2Q8IWV8 1755 aa17.19■□□□□ 0.34
CHD3-206ENST00000452447 KIF13BQ9NQT8 1826 aa17.19■□□□□ 0.34
CHD3-206ENST00000452447 STARD3NLO95772 234 aa17.19■□□□□ 0.34
CHD3-206ENST00000452447 TGFB2P61812 414 aa17.19■□□□□ 0.34
CHD3-206ENST00000452447 ZNF790Q6PG37 636 aa17.19■□□□□ 0.34
CHD3-206ENST00000452447 RTF1Q92541 710 aaKnown RBP17.19■□□□□ 0.34
CHD3-206ENST00000452447 FKBP8Q14318 412 aa17.18■□□□□ 0.34
CHD3-206ENST00000452447 SOS1Q07889 1333 aaPredicted RBP17.18■□□□□ 0.34
CHD3-206ENST00000452447 SIPA1L3O60292 1781 aaPredicted RBP17.17■□□□□ 0.34
CHD3-206ENST00000452447 NEFMP07197 916 aa17.17■□□□□ 0.34
CHD3-206ENST00000452447 ZNF496Q96IT1 587 aaPredicted RBP17.17■□□□□ 0.34
CHD3-206ENST00000452447 TEX13AQ9BXU3 409 aaPredicted RBP17.17■□□□□ 0.34
CHD3-206ENST00000452447 ZBTB1Q9Y2K1 713 aa17.17■□□□□ 0.34
CHD3-206ENST00000452447 CEMIPQ8WUJ3 1361 aa17.17■□□□□ 0.34
CHD3-206ENST00000452447 BTBD11A6QL63 1104 aa17.16■□□□□ 0.34
CHD3-206ENST00000452447 CANXP27824 592 aaKnown RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms