RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 SYT17Q9BSW7 474 aa27.05■■□□□ 1.92
LRCH3-208ENST00000443727 CFAP53Q96M91 514 aa27.04■■□□□ 1.92
LRCH3-208ENST00000443727 RBM42Q9BTD8 480 aaKnown RBP27.04■■□□□ 1.92
LRCH3-208ENST00000443727 AKAP4Q5JQC9 854 aa27.03■■□□□ 1.92
LRCH3-208ENST00000443727 LINC00116Q8NCU8 138 aa27.03■■□□□ 1.92
LRCH3-208ENST00000443727 PHF14O94880 888 aa27.02■■□□□ 1.92
LRCH3-208ENST00000443727 TAF1LQ8IZX4 1826 aa27.02■■□□□ 1.92
LRCH3-208ENST00000443727 C4BP0C0L5 1744 aa27.02■■□□□ 1.92
LRCH3-208ENST00000443727 ITPK1Q13572 414 aa27.01■■□□□ 1.91
LRCH3-208ENST00000443727 MSL1Q68DK7 614 aa27.01■■□□□ 1.91
LRCH3-208ENST00000443727 NFATC2IPQ8NCF5 419 aa27.01■■□□□ 1.91
LRCH3-208ENST00000443727 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.98■■□□□ 1.91
LRCH3-208ENST00000443727 GNPATO15228 680 aa26.98■■□□□ 1.91
LRCH3-208ENST00000443727 SSFA2P28290 1259 aa26.97■■□□□ 1.91
LRCH3-208ENST00000443727 MTHFSDQ2M296 383 aaKnown RBP26.97■■□□□ 1.91
LRCH3-208ENST00000443727 COL3A1P02461 1466 aaPredicted RBP26.97■■□□□ 1.91
LRCH3-208ENST00000443727 PTCD1O75127 700 aaKnown RBP26.96■■□□□ 1.91
LRCH3-208ENST00000443727 SMIM5Q71RC9 77 aa26.96■■□□□ 1.91
LRCH3-208ENST00000443727 MAP3K5Q99683 1374 aa26.96■■□□□ 1.91
LRCH3-208ENST00000443727 PPP2R1AP30153 589 aa26.95■■□□□ 1.9
LRCH3-208ENST00000443727 AMIGO3Q86WK7 504 aa26.95■■□□□ 1.9
LRCH3-208ENST00000443727 NUDCQ9Y266 331 aa26.95■■□□□ 1.9
LRCH3-208ENST00000443727 LGR6Q9HBX8 967 aa26.94■■□□□ 1.9
LRCH3-208ENST00000443727 RNMTO43148 476 aaKnown RBP26.93■■□□□ 1.9
LRCH3-208ENST00000443727 SLC4A9Q96Q91 983 aa26.93■■□□□ 1.9
LRCH3-208ENST00000443727 SLC52A2Q9HAB3 445 aa26.93■■□□□ 1.9
LRCH3-208ENST00000443727 RTCBQ9Y3I0 505 aaKnown RBP26.91■■□□□ 1.9
LRCH3-208ENST00000443727 COL24A1Q17RW2 1714 aa26.9■■□□□ 1.9
LRCH3-208ENST00000443727 YY1P25490 414 aa26.9■■□□□ 1.9
LRCH3-208ENST00000443727 GAS2L2Q8NHY3 880 aa26.9■■□□□ 1.9
LRCH3-208ENST00000443727 UBR3Q6ZT12 1888 aa26.89■■□□□ 1.9
LRCH3-208ENST00000443727 TRAPPC3LQ5T215 181 aa26.89■■□□□ 1.9
LRCH3-208ENST00000443727 RC3H1Q5TC82 1133 aaKnown RBP26.89■■□□□ 1.9
LRCH3-208ENST00000443727 SCN11AQ9UI33 1791 aa26.89■■□□□ 1.89
LRCH3-208ENST00000443727 U2AF1L5P0DN76 240 aaPredicted RBP26.88■■□□□ 1.89
LRCH3-208ENST00000443727 U2AF1Q01081 240 aaKnown RBP eCLIP26.88■■□□□ 1.892e-7■■□□□ 14.2
LRCH3-208ENST00000443727 GPR162Q16538 588 aa26.87■■□□□ 1.89
LRCH3-208ENST00000443727 PELP1Q8IZL8 1130 aaKnown RBP26.87■■□□□ 1.89
LRCH3-208ENST00000443727 CNTNAP4Q9C0A0 1308 aa26.87■■□□□ 1.89
LRCH3-208ENST00000443727 PRKAR2BP31323 418 aa26.86■■□□□ 1.89
LRCH3-208ENST00000443727 GNAT3A8MTJ3 354 aa26.85■■□□□ 1.89
LRCH3-208ENST00000443727 ZNF831Q5JPB2 1677 aa26.85■■□□□ 1.89
LRCH3-208ENST00000443727 SLC39A6Q13433 755 aa26.84■■□□□ 1.89
LRCH3-208ENST00000443727 NLGN2Q8NFZ4 835 aa26.84■■□□□ 1.89
LRCH3-208ENST00000443727 RPS6KA4O75676 772 aa26.83■■□□□ 1.89
LRCH3-208ENST00000443727 ADRA2BP18089 450 aa26.83■■□□□ 1.89
LRCH3-208ENST00000443727 TEFQ10587 303 aa26.83■■□□□ 1.89
LRCH3-208ENST00000443727 RSPH6AQ9H0K4 717 aa26.83■■□□□ 1.89
LRCH3-208ENST00000443727 MRC1P22897 1456 aa26.82■■□□□ 1.88
LRCH3-208ENST00000443727 RFC4P35249 363 aa26.82■■□□□ 1.88
LRCH3-208ENST00000443727 CRKLP46109 303 aaKnown RBP26.82■■□□□ 1.88
LRCH3-208ENST00000443727 PHACTR3Q96KR7 559 aa26.82■■□□□ 1.88
LRCH3-208ENST00000443727 ARHGEF1Q92888 912 aaKnown RBP26.81■■□□□ 1.88
LRCH3-208ENST00000443727 CD2APQ9Y5K6 639 aa26.81■■□□□ 1.88
LRCH3-208ENST00000443727 TTC5Q8N0Z6 440 aa26.8■■□□□ 1.88
LRCH3-208ENST00000443727 COL5A3P25940 1745 aaPredicted RBP26.79■■□□□ 1.88
LRCH3-208ENST00000443727 FCHSD2O94868 740 aa26.79■■□□□ 1.88
LRCH3-208ENST00000443727 DNAJC10Q8IXB1 793 aa26.79■■□□□ 1.88
LRCH3-208ENST00000443727 NLGN1Q8N2Q7 840 aa26.78■■□□□ 1.88
LRCH3-208ENST00000443727 IL17REQ8NFR9 667 aa26.78■■□□□ 1.88
LRCH3-208ENST00000443727 MMP10P09238 476 aa26.77■■□□□ 1.88
LRCH3-208ENST00000443727 DDX10Q13206 875 aaKnown RBP26.76■■□□□ 1.87
LRCH3-208ENST00000443727 ADAMTS7Q9UKP4 1686 aa26.76■■□□□ 1.87
LRCH3-208ENST00000443727 NEFMP07197 916 aa26.75■■□□□ 1.87
LRCH3-208ENST00000443727 CCDC87Q9NVE4 849 aa26.75■■□□□ 1.87
LRCH3-208ENST00000443727 VIRMAQ69YN4 1812 aaKnown RBP26.74■■□□□ 1.87
LRCH3-208ENST00000443727 INTS5Q6P9B9 1019 aaKnown RBP26.74■■□□□ 1.87
LRCH3-208ENST00000443727 RTF1Q92541 710 aaKnown RBP26.74■■□□□ 1.87
LRCH3-208ENST00000443727 TJP1Q07157 1748 aa26.73■■□□□ 1.87
LRCH3-208ENST00000443727 VSIG10Q8N0Z9 540 aa26.73■■□□□ 1.87
LRCH3-208ENST00000443727 MYH14Q7Z406 1995 aaKnown RBP26.72■■□□□ 1.87
LRCH3-208ENST00000443727 CYP19A1P11511 503 aaPredicted RBP26.72■■□□□ 1.87
LRCH3-208ENST00000443727 GYS1P13807 737 aa26.72■■□□□ 1.87
LRCH3-208ENST00000443727 KCPQ6ZWJ8 1503 aa26.71■■□□□ 1.87
LRCH3-208ENST00000443727 RALBP1Q15311 655 aa26.71■■□□□ 1.87
LRCH3-208ENST00000443727 ZNF790Q6PG37 636 aa26.71■■□□□ 1.87
LRCH3-208ENST00000443727 CICQ96RK0 1608 aaPredicted RBP26.7■■□□□ 1.86
LRCH3-208ENST00000443727 SRP68Q9UHB9 627 aaKnown RBP26.7■■□□□ 1.86
LRCH3-208ENST00000443727 BTBD11A6QL63 1104 aa26.69■■□□□ 1.86
LRCH3-208ENST00000443727 GRIN3BO60391 1043 aa26.69■■□□□ 1.86
LRCH3-208ENST00000443727 STARD3NLO95772 234 aa26.69■■□□□ 1.86
LRCH3-208ENST00000443727 PARP3Q9Y6F1 533 aa26.69■■□□□ 1.86
LRCH3-208ENST00000443727 CEMIPQ8WUJ3 1361 aa26.69■■□□□ 1.86
LRCH3-208ENST00000443727 ZPR1O75312 459 aa26.68■■□□□ 1.86
LRCH3-208ENST00000443727 YBX3P16989 372 aaKnown RBP eCLIP26.68■■□□□ 1.86
LRCH3-208ENST00000443727 MCM10Q7L590 875 aa26.68■■□□□ 1.86
LRCH3-208ENST00000443727 ZNF496Q96IT1 587 aaPredicted RBP26.68■■□□□ 1.86
LRCH3-208ENST00000443727 USP42Q9H9J4 1324 aaKnown RBP26.67■■□□□ 1.86
LRCH3-208ENST00000443727 UTRNP46939 3433 aa26.67■■□□□ 1.86
LRCH3-208ENST00000443727 SOS1Q07889 1333 aaPredicted RBP26.66■■□□□ 1.86
LRCH3-208ENST00000443727 FMNL2Q96PY5 1086 aa26.66■■□□□ 1.86
LRCH3-208ENST00000443727 TEX13AQ9BXU3 409 aaPredicted RBP26.66■■□□□ 1.86
LRCH3-208ENST00000443727 ZBTB1Q9Y2K1 713 aa26.66■■□□□ 1.86
LRCH3-208ENST00000443727 CANXP27824 592 aaKnown RBP26.65■■□□□ 1.86
LRCH3-208ENST00000443727 PNNQ9H307 717 aaKnown RBP26.65■■□□□ 1.86
LRCH3-208ENST00000443727 HEG1Q9ULI3 1381 aa26.64■■□□□ 1.86
LRCH3-208ENST00000443727 HTATSF1O43719 755 aaKnown RBP26.64■■□□□ 1.86
LRCH3-208ENST00000443727 FKBP8Q14318 412 aa26.64■■□□□ 1.86
LRCH3-208ENST00000443727 WWC3Q9ULE0 1092 aa26.64■■□□□ 1.86
LRCH3-208ENST00000443727 C4AP0C0L4 1744 aa26.64■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms