RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, human

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-208	ENST00000430669	RBM42	Q9BTD8	480 aa	Known RBP	13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	ARHGAP31	Q2M1Z3	1444 aa		13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	TSR1	Q2NL82	804 aa	Known RBP	13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	CCDC47	Q96A33	483 aa	Known RBP	13.81	□□□□□ -0.2
PTCH1-208	ENST00000430669	MYO5B	Q9ULV0	1848 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	TPD52L1	Q16890	204 aa	Predicted RBP	13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	FER1L4	A9Z1Z3	1794 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	ANKRD20A12P	Q8NF67	263 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	DDX54	Q8TDD1	881 aa	Known RBP	13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	MBIP	Q9NS73	344 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	NEK4	P51957	841 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	BABAM1	Q9NWV8	329 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	CTNNA3	Q9UI47	895 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	AACS	Q86V21	672 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	SBNO1	A3KN83	1393 aa		13.8	□□□□□ -0.2
PTCH1-208	ENST00000430669	WDR33	Q9C0J8	1336 aa	Known RBP	13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	MARCH6	O60337	910 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	SASS6	Q6UVJ0	657 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	NACAP1	Q9BZK3	213 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	ARHGEF10	O15013	1369 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	MAP3K5	Q99683	1374 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	FMNL2	Q96PY5	1086 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	TMEM2	Q9UHN6	1383 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	NEURL4	Q96JN8	1562 aa		13.79	□□□□□ -0.2
PTCH1-208	ENST00000430669	CCDC73	Q6ZRK6	1079 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	VPS37C	A5D8V6	355 aa	Predicted RBP	13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	BICD2	Q8TD16	824 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	FLII	Q13045	1269 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	ZNF396	Q96N95	335 aa	Predicted RBP	13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	AK9	Q5TCS8	1911 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	FAM135B	Q49AJ0	1406 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	MX1	P20591	662 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	MPHOSPH8	Q99549	860 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	ZC3H6	P61129	1189 aa	Known RBP	13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	FOXO3	O43524	673 aa		13.78	□□□□□ -0.2
PTCH1-208	ENST00000430669	IFNL2	Q8IZJ0	200 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	DNAAF4	Q8WXU2	420 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	DNAJC2	Q99543	621 aa	Known RBP	13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	BMP2KL	Q5H9B9	411 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	RIMBP3C	A6NJZ7	1639 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	RIMBP3B	A6NNM3	1639 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	RIMBP3	Q9UFD9	1639 aa		13.77	□□□□□ -0.2
PTCH1-208	ENST00000430669	MSH5	O43196	834 aa		13.77	□□□□□ -0.21
PTCH1-208	ENST00000430669	CARD14	Q9BXL6	1004 aa		13.77	□□□□□ -0.21
PTCH1-208	ENST00000430669	RTN4	Q9NQC3	1192 aa	Known RBP	13.77	□□□□□ -0.21
PTCH1-208	ENST00000430669	CDKL5	O76039	1030 aa		13.77	□□□□□ -0.21
PTCH1-208	ENST00000430669	DHX8	Q14562	1220 aa	Known RBP	13.77	□□□□□ -0.21
PTCH1-208	ENST00000430669	MRE11	P49959	708 aa		13.76	□□□□□ -0.21
PTCH1-208	ENST00000430669	XPC	Q01831	940 aa	Predicted RBP	13.76	□□□□□ -0.21
PTCH1-208	ENST00000430669	POLK	Q9UBT6	870 aa		13.76	□□□□□ -0.21
PTCH1-208	ENST00000430669	ANKRD24	Q8TF21	1146 aa		13.76	□□□□□ -0.21
PTCH1-208	ENST00000430669	DCTN1	Q14203	1278 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	C20orf194	Q5TEA3	1177 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	AKAP4	Q5JQC9	854 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	CEP126	Q9P2H0	1117 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	PLEKHG1	Q9ULL1	1385 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	THUMPD2	Q9BTF0	503 aa	Known RBP	13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	C19orf44	Q9H6X5	657 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	YEATS2	Q9ULM3	1422 aa		13.75	□□□□□ -0.21
PTCH1-208	ENST00000430669	DIP2C	Q9Y2E4	1556 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	NUCB1	Q02818	461 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	JMY	Q8N9B5	988 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	TRAK2	O60296	914 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	EIF4A2	Q14240	407 aa	Known RBP	13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	RSPH6A	Q9H0K4	717 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	HMGB1	P09429	215 aa	Known RBP	13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	MIS18A	Q9NYP9	233 aa		13.74	□□□□□ -0.21
PTCH1-208	ENST00000430669	FRMPD1	Q5SYB0	1578 aa		13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669	ALK	Q9UM73	1620 aa		13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669	IGHMBP2	P38935	993 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669		U3KPZ7	1027 aa	Predicted RBP	13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669	SNRPA1	P09661	255 aa	Known RBP	13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669	SIL1	Q9H173	461 aa		13.73	□□□□□ -0.21
PTCH1-208	ENST00000430669	BLOC1S2	Q6QNY1	142 aa		13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	NASP	P49321	788 aa	Predicted RBP	13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	MPRIP	Q6WCQ1	1025 aa		13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	LRRFIP2	Q9Y608	721 aa	Known RBP	13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	CLSTN1	O94985	981 aa		13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	TCEAL9	Q9UHQ7	104 aa		13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	CFAP45	Q9UL16	551 aa		13.72	□□□□□ -0.21
PTCH1-208	ENST00000430669	OLFM4	Q6UX06	510 aa		13.71	□□□□□ -0.21
PTCH1-208	ENST00000430669	KIN	O60870	393 aa	Known RBP	13.71	□□□□□ -0.21
PTCH1-208	ENST00000430669	VPS53	Q5VIR6	699 aa		13.71	□□□□□ -0.21
PTCH1-208	ENST00000430669	RTL1	A6NKG5	1358 aa		13.71	□□□□□ -0.21
PTCH1-208	ENST00000430669	EVI5L	Q96CN4	794 aa		13.71	□□□□□ -0.22
PTCH1-208	ENST00000430669	KIF24	Q5T7B8	1368 aa		13.71	□□□□□ -0.22
PTCH1-208	ENST00000430669	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.71	□□□□□ -0.22
PTCH1-208	ENST00000430669	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.71	□□□□□ -0.22
PTCH1-208	ENST00000430669	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.71	□□□□□ -0.22
PTCH1-208	ENST00000430669	TRIM22	Q8IYM9	498 aa		13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	HSP90AB2P	Q58FF8	381 aa		13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	MRPL50	Q8N5N7	158 aa	Known RBP	13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	USHBP1	Q8N6Y0	703 aa		13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	CWC25	Q9NXE8	425 aa	Predicted RBP	13.7	□□□□□ -0.22
PTCH1-208	ENST00000430669	MAP3K2	Q9Y2U5	619 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 1037.7 ms