RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 PLEKHG2Q9H7P9 1386 aa23.35■■□□□ 1.33
CPSF4-203ENST00000430038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.34■■□□□ 1.33
CPSF4-203ENST00000430038 ERVV-2B6SEH9 535 aa23.34■■□□□ 1.33
CPSF4-203ENST00000430038 ATP6V1AP38606 617 aa23.34■■□□□ 1.33
CPSF4-203ENST00000430038 AK7Q96M32 723 aa23.34■■□□□ 1.33
CPSF4-203ENST00000430038 KDRP35968 1356 aa23.34■■□□□ 1.33
CPSF4-203ENST00000430038 MYH14Q7Z406 1995 aaKnown RBP23.34■■□□□ 1.33
CPSF4-203ENST00000430038 CC2D1BQ5T0F9 858 aaKnown RBP23.33■■□□□ 1.33
CPSF4-203ENST00000430038 DCAF5Q96JK2 942 aa23.33■■□□□ 1.33
CPSF4-203ENST00000430038 FLAD1Q8NFF5 587 aa23.32■■□□□ 1.32
CPSF4-203ENST00000430038 GPR162Q16538 588 aa23.31■■□□□ 1.32
CPSF4-203ENST00000430038 AMOTQ4VCS5 1084 aa23.31■■□□□ 1.32
CPSF4-203ENST00000430038 SCN11AQ9UI33 1791 aa23.31■■□□□ 1.32
CPSF4-203ENST00000430038 VIRMAQ69YN4 1812 aaKnown RBP23.31■■□□□ 1.32
CPSF4-203ENST00000430038 COL5A3P25940 1745 aaPredicted RBP23.3■■□□□ 1.32
CPSF4-203ENST00000430038 YBX3P16989 372 aaKnown RBP eCLIP23.3■■□□□ 1.32
CPSF4-203ENST00000430038 ZNF784Q8NCA9 323 aaPredicted RBP23.3■■□□□ 1.32
CPSF4-203ENST00000430038 ZNF831Q5JPB2 1677 aa23.29■■□□□ 1.32
CPSF4-203ENST00000430038 RBM42Q9BTD8 480 aaKnown RBP23.29■■□□□ 1.32
CPSF4-203ENST00000430038 GNPATO15228 680 aa23.28■■□□□ 1.32
CPSF4-203ENST00000430038 HMOX1P09601 288 aa23.28■■□□□ 1.32
CPSF4-203ENST00000430038 SSFA2P28290 1259 aa23.28■■□□□ 1.32
CPSF4-203ENST00000430038 CNGB1Q14028 1251 aaPredicted RBP23.28■■□□□ 1.32
CPSF4-203ENST00000430038 PELP1Q8IZL8 1130 aaKnown RBP23.28■■□□□ 1.32
CPSF4-203ENST00000430038 NFATC2IPQ8NCF5 419 aa23.28■■□□□ 1.32
CPSF4-203ENST00000430038 HSP90AB1P08238 724 aaKnown RBP23.27■■□□□ 1.32
CPSF4-203ENST00000430038 CABP4P57796 275 aa23.27■■□□□ 1.32
CPSF4-203ENST00000430038 LGR6Q9HBX8 967 aa23.26■■□□□ 1.31
CPSF4-203ENST00000430038 C1orf141Q5JVX7 400 aa23.24■■□□□ 1.31
CPSF4-203ENST00000430038 TJP1Q07157 1748 aa23.23■■□□□ 1.31
CPSF4-203ENST00000430038 PTCD1O75127 700 aaKnown RBP23.23■■□□□ 1.31
CPSF4-203ENST00000430038 HMGB2P26583 209 aaKnown RBP23.23■■□□□ 1.31
CPSF4-203ENST00000430038 CD2APQ9Y5K6 639 aa23.23■■□□□ 1.31
CPSF4-203ENST00000430038 COL3A1P02461 1466 aaPredicted RBP23.23■■□□□ 1.31
CPSF4-203ENST00000430038 MTHFSDQ2M296 383 aaKnown RBP23.21■■□□□ 1.31
CPSF4-203ENST00000430038 ARHGEF1Q92888 912 aaKnown RBP23.21■■□□□ 1.31
CPSF4-203ENST00000430038 C4AP0C0L4 1744 aa23.2■■□□□ 1.3
CPSF4-203ENST00000430038 NPC1L1Q9UHC9 1359 aa23.2■■□□□ 1.3
CPSF4-203ENST00000430038 DIAPH1O60610 1272 aaKnown RBP23.2■■□□□ 1.3
CPSF4-203ENST00000430038 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
CPSF4-203ENST00000430038 RC3H1Q5TC82 1133 aaKnown RBP23.2■■□□□ 1.3
CPSF4-203ENST00000430038 WWC3Q9ULE0 1092 aa23.19■■□□□ 1.3
CPSF4-203ENST00000430038 ADAMTS7Q9UKP4 1686 aa23.19■■□□□ 1.3
CPSF4-203ENST00000430038 CNTNAP4Q9C0A0 1308 aa23.18■■□□□ 1.3
CPSF4-203ENST00000430038 RNMTO43148 476 aaKnown RBP23.18■■□□□ 1.3
CPSF4-203ENST00000430038 TRAPPC3LQ5T215 181 aa23.18■■□□□ 1.3
CPSF4-203ENST00000430038 RTCBQ9Y3I0 505 aaKnown RBP23.18■■□□□ 1.3
CPSF4-203ENST00000430038 KIAA1551Q9HCM1 1747 aa23.17■■□□□ 1.3
CPSF4-203ENST00000430038 RPS6KA4O75676 772 aa23.17■■□□□ 1.3
CPSF4-203ENST00000430038 MMP10P09238 476 aa23.16■■□□□ 1.3
CPSF4-203ENST00000430038 SLC39A6Q13433 755 aa23.16■■□□□ 1.3
CPSF4-203ENST00000430038 SLC52A2Q9HAB3 445 aa23.16■■□□□ 1.3
CPSF4-203ENST00000430038 KIF13BQ9NQT8 1826 aa23.16■■□□□ 1.3
CPSF4-203ENST00000430038 CICQ96RK0 1608 aaPredicted RBP23.15■■□□□ 1.3
CPSF4-203ENST00000430038 GYS1P13807 737 aa23.15■■□□□ 1.3
CPSF4-203ENST00000430038 CRKLP46109 303 aaKnown RBP23.15■■□□□ 1.3
CPSF4-203ENST00000430038 MRC1P22897 1456 aa23.15■■□□□ 1.3
CPSF4-203ENST00000430038 N4BP2Q86UW6 1770 aaPredicted RBP23.14■■□□□ 1.3
CPSF4-203ENST00000430038 INTS5Q6P9B9 1019 aaKnown RBP23.14■■□□□ 1.29
CPSF4-203ENST00000430038 SRP68Q9UHB9 627 aaKnown RBP23.13■■□□□ 1.29
CPSF4-203ENST00000430038 GRIN3BO60391 1043 aa23.12■■□□□ 1.29
CPSF4-203ENST00000430038 DNAJC10Q8IXB1 793 aa23.12■■□□□ 1.29
CPSF4-203ENST00000430038 KCPQ6ZWJ8 1503 aa23.12■■□□□ 1.29
CPSF4-203ENST00000430038 U2SURPO15042 1029 aaKnown RBP23.1■■□□□ 1.29
CPSF4-203ENST00000430038 ADRA2BP18089 450 aa23.1■■□□□ 1.29
CPSF4-203ENST00000430038 RFC4P35249 363 aa23.09■■□□□ 1.29
CPSF4-203ENST00000430038 NLGN1Q8N2Q7 840 aa23.09■■□□□ 1.29
CPSF4-203ENST00000430038 IL17REQ8NFR9 667 aa23.09■■□□□ 1.29
CPSF4-203ENST00000430038 PHACTR3Q96KR7 559 aa23.09■■□□□ 1.29
CPSF4-203ENST00000430038 UBR2Q8IWV8 1755 aa23.09■■□□□ 1.29
CPSF4-203ENST00000430038 PXDNLA1KZ92 1463 aa23.08■■□□□ 1.29
CPSF4-203ENST00000430038 SIPA1L3O60292 1781 aaPredicted RBP23.08■■□□□ 1.29
CPSF4-203ENST00000430038 CYP19A1P11511 503 aaPredicted RBP23.07■■□□□ 1.28
CPSF4-203ENST00000430038 FKBP8Q14318 412 aa23.07■■□□□ 1.28
CPSF4-203ENST00000430038 A0A0G2JLW4 131 aa23.06■■□□□ 1.28
CPSF4-203ENST00000430038 BRCA1P38398 1863 aaKnown RBP23.05■■□□□ 1.28
CPSF4-203ENST00000430038 DDR1Q08345 913 aa23.05■■□□□ 1.28
CPSF4-203ENST00000430038 C10orf71Q711Q0 1435 aa23.05■■□□□ 1.28
CPSF4-203ENST00000430038 USP42Q9H9J4 1324 aaKnown RBP23.05■■□□□ 1.28
CPSF4-203ENST00000430038 PPP2R1AP30153 589 aa23.04■■□□□ 1.28
CPSF4-203ENST00000430038 CCDC87Q9NVE4 849 aa23.04■■□□□ 1.28
CPSF4-203ENST00000430038 RSPH6AQ9H0K4 717 aa23.03■■□□□ 1.28
CPSF4-203ENST00000430038 SOS1Q07889 1333 aaPredicted RBP23.03■■□□□ 1.28
CPSF4-203ENST00000430038 KCNA3P22001 575 aa23.02■■□□□ 1.28
CPSF4-203ENST00000430038 ZBTB1Q9Y2K1 713 aa23.02■■□□□ 1.28
CPSF4-203ENST00000430038 DPEP1P16444 411 aa23.01■■□□□ 1.27
CPSF4-203ENST00000430038 TM4SF1P30408 202 aa23.01■■□□□ 1.27
CPSF4-203ENST00000430038 PRKAR2BP31323 418 aa23.01■■□□□ 1.27
CPSF4-203ENST00000430038 GNAT3A8MTJ3 354 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 C1QTNF8P60827 252 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 TGFB2P61812 414 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 USPL1Q5W0Q7 1092 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 BCL2L12Q9HB09 334 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 PARP3Q9Y6F1 533 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 AFDNP55196 1824 aaKnown RBP23■■□□□ 1.27
CPSF4-203ENST00000430038 ADCY9O60503 1353 aa23■■□□□ 1.27
CPSF4-203ENST00000430038 ATP10DQ9P241 1426 aa22.99■■□□□ 1.27
CPSF4-203ENST00000430038 KCNQ3O43525 872 aa22.99■■□□□ 1.27
CPSF4-203ENST00000430038 ZNF496Q96IT1 587 aaPredicted RBP22.99■■□□□ 1.27
CPSF4-203ENST00000430038 POLRMTO00411 1230 aaKnown RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms