RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 CFAP100Q494V2 611 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 KLHL10Q6JEL2 608 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 RANBP6O60518 1105 aaKnown RBP18■□□□□ 0.47
PTPRF-206ENST00000429895 IFIT1P09914 478 aaKnown RBP18■□□□□ 0.47
PTPRF-206ENST00000429895 TMEM57Q8N5G2 664 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 C9orf84Q5VXU9 1444 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 AKAP2Q9Y2D5 859 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 ZNF287Q9HBT7 754 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 SPDYE4A6NLX3 237 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 PPP1R12BO60237 982 aaPredicted RBP18■□□□□ 0.47
PTPRF-206ENST00000429895 GUCY1B3Q02153 619 aa18■□□□□ 0.47
PTPRF-206ENST00000429895 CCDC66A2RUB6 948 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 NFE2L2Q16236 605 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 SMTNL1A8MU46 457 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 MTERF4Q7Z6M4 381 aaKnown RBP17.99■□□□□ 0.47
PTPRF-206ENST00000429895 ZNF397Q8NF99 534 aaPredicted RBP17.99■□□□□ 0.47
PTPRF-206ENST00000429895 ANKRD30BQ9BXX2 1392 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 HMGN5P82970 282 aaKnown RBP17.99■□□□□ 0.47
PTPRF-206ENST00000429895 IQCEQ6IPM2 695 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 SLC52A1Q9NWF4 448 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 CCDC102AQ96A19 550 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 NAPBQ9H115 298 aa17.99■□□□□ 0.47
PTPRF-206ENST00000429895 RPGRQ92834 1020 aaKnown RBP17.99■□□□□ 0.47
PTPRF-206ENST00000429895 GOLGA6L7A0A1B0GV03 622 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 WAPLQ7Z5K2 1190 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 SLC4A8Q2Y0W8 1093 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 ANAPC15P60006 121 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 ARHGAP29Q52LW3 1261 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 CASKIN1Q8WXD9 1431 aa17.98■□□□□ 0.47
PTPRF-206ENST00000429895 ZNF444Q8N0Y2 327 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-206ENST00000429895 GRPEL1Q9HAV7 217 aa17.97■□□□□ 0.47
PTPRF-206ENST00000429895 TRMT112Q9UI30 125 aaKnown RBP17.97■□□□□ 0.47
PTPRF-206ENST00000429895 EIF3JO75822 258 aaKnown RBP17.97■□□□□ 0.47
PTPRF-206ENST00000429895 FCHSD2O94868 740 aa17.97■□□□□ 0.47
PTPRF-206ENST00000429895 NBPF8Q3BBV2 869 aa17.97■□□□□ 0.47
PTPRF-206ENST00000429895 DNA2P51530 1060 aa17.97■□□□□ 0.47
PTPRF-206ENST00000429895 U3KPZ7 1027 aaPredicted RBP17.97■□□□□ 0.47
PTPRF-206ENST00000429895 KIF21BO75037 1637 aa17.97■□□□□ 0.47
PTPRF-206ENST00000429895 KCNH5Q8NCM2 988 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 CCDC113Q9H0I3 377 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 CCDC8Q9H0W5 538 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-206ENST00000429895 HFM1A2PYH4 1435 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 NSD3Q9BZ95 1437 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 WDHD1O75717 1129 aaPredicted RBP17.96■□□□□ 0.47
PTPRF-206ENST00000429895 CUL5Q93034 780 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 TSG101Q99816 390 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 TMEM87AQ8NBN3 555 aa17.96■□□□□ 0.47
PTPRF-206ENST00000429895 TMPOP42166 694 aaKnown RBP17.95■□□□□ 0.46
PTPRF-206ENST00000429895 RPAP2Q8IXW5 612 aaPredicted RBP17.95■□□□□ 0.46
PTPRF-206ENST00000429895 KIF1BPQ96EK5 621 aa17.95■□□□□ 0.46
PTPRF-206ENST00000429895 GPTP24298 496 aa17.95■□□□□ 0.46
PTPRF-206ENST00000429895 IFIT5Q13325 482 aaKnown RBP17.95■□□□□ 0.46
PTPRF-206ENST00000429895 MX1P20591 662 aa17.95■□□□□ 0.46
PTPRF-206ENST00000429895 LARP1Q6PKG0 1096 aaKnown RBP17.95■□□□□ 0.46
PTPRF-206ENST00000429895 CCDC148Q8NFR7 591 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 TNNT1P13805 278 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 MAP3K11Q16584 847 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 ATAD2Q6PL18 1390 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 SLC5A1P13866 664 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 SPA17Q15506 151 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 CACNA2D4Q7Z3S7 1137 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 KIAA1107Q9UPP5 1409 aa17.94■□□□□ 0.46
PTPRF-206ENST00000429895 CTCFLQ8NI51 663 aaPredicted RBP17.94■□□□□ 0.46
PTPRF-206ENST00000429895 CTNNBL1Q8WYA6 563 aaPredicted RBP17.94■□□□□ 0.46
PTPRF-206ENST00000429895 MAP3K12Q12852 859 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 UQCRHLA0A096LP55 91 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 SYCE3A1L190 88 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 UQCRHP07919 91 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 CETN2P41208 172 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 FKBP15Q5T1M5 1219 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 DNAI2Q9GZS0 605 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 POGZQ7Z3K3 1410 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 CCDC178Q5BJE1 867 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 TMX1Q9H3N1 280 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 GRIN2BQ13224 1484 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 MACROD2A1Z1Q3 448 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 C6orf229H3BNL8 230 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 SLC12A7Q9Y666 1083 aa17.93■□□□□ 0.46
PTPRF-206ENST00000429895 F6X3S4 739 aa17.92■□□□□ 0.46
PTPRF-206ENST00000429895 TAF7Q15545 349 aaPredicted RBP17.92■□□□□ 0.46
PTPRF-206ENST00000429895 GOPCQ9HD26 462 aa17.92■□□□□ 0.46
PTPRF-206ENST00000429895 NLRP5P59047 1200 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 NGLY1Q96IV0 654 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 LARP6Q9BRS8 491 aaKnown RBP17.91■□□□□ 0.46
PTPRF-206ENST00000429895 GLRX3O76003 335 aaKnown RBP17.91■□□□□ 0.46
PTPRF-206ENST00000429895 CCDC144CPQ8IYA2 1237 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 VAT1LQ9HCJ6 419 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 DYDC1Q8WWB3 177 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 C8orf76Q96K31 380 aa17.91■□□□□ 0.46
PTPRF-206ENST00000429895 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.91■□□□□ 0.46
PTPRF-206ENST00000429895 ZNF213O14771 459 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 ANKRD18BA2A2Z9 1011 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 RAB11FIP3O75154 756 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 ZBTB3Q9H5J0 574 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 SSRP1Q08945 709 aaKnown RBP17.9■□□□□ 0.46
PTPRF-206ENST00000429895 TMEM266Q2M3C6 531 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 BACH2Q9BYV9 841 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 CCDC61Q9Y6R9 512 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 IQCA1Q86XH1 822 aa17.9■□□□□ 0.46
PTPRF-206ENST00000429895 CCDC150Q8NCX0 1101 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 238.3 ms