RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 PER1O15534 1290 aaPredicted RBP28.9■■■□□ 2.22
PTPN4-202ENST00000420482 CABP4P57796 275 aa28.9■■■□□ 2.22
PTPN4-202ENST00000420482 CC2D1BQ5T0F9 858 aaKnown RBP28.9■■■□□ 2.22
PTPN4-202ENST00000420482 AEBP1Q8IUX7 1158 aa28.9■■■□□ 2.22
PTPN4-202ENST00000420482 ATG3Q9NT62 314 aa28.9■■■□□ 2.22
PTPN4-202ENST00000420482 SSFA2P28290 1259 aa28.89■■■□□ 2.22
PTPN4-202ENST00000420482 NLGN2Q8NFZ4 835 aa28.89■■■□□ 2.22
PTPN4-202ENST00000420482 PHF14O94880 888 aa28.87■■■□□ 2.21
PTPN4-202ENST00000420482 MSL1Q68DK7 614 aa28.87■■■□□ 2.21
PTPN4-202ENST00000420482 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.86■■■□□ 2.21
PTPN4-202ENST00000420482 LINC00116Q8NCU8 138 aa28.86■■■□□ 2.21
PTPN4-202ENST00000420482 GOLGB1Q14789 3259 aaKnown RBP28.86■■■□□ 2.21
PTPN4-202ENST00000420482 NPC1L1Q9UHC9 1359 aa28.86■■■□□ 2.21
PTPN4-202ENST00000420482 GNPATO15228 680 aa28.84■■■□□ 2.21
PTPN4-202ENST00000420482 DIAPH1O60610 1272 aaKnown RBP28.84■■■□□ 2.21
PTPN4-202ENST00000420482 PELP1Q8IZL8 1130 aaKnown RBP28.84■■■□□ 2.21
PTPN4-202ENST00000420482 RBM42Q9BTD8 480 aaKnown RBP28.84■■■□□ 2.21
PTPN4-202ENST00000420482 ITPK1Q13572 414 aa28.83■■■□□ 2.21
PTPN4-202ENST00000420482 KDM6AO15550 1401 aaPredicted RBP28.83■■■□□ 2.21
PTPN4-202ENST00000420482 ZNF831Q5JPB2 1677 aa28.81■■■□□ 2.2
PTPN4-202ENST00000420482 AKAP4Q5JQC9 854 aa28.81■■■□□ 2.2
PTPN4-202ENST00000420482 CD2APQ9Y5K6 639 aa28.8■■■□□ 2.2
PTPN4-202ENST00000420482 RTCBQ9Y3I0 505 aaKnown RBP28.79■■■□□ 2.2
PTPN4-202ENST00000420482 NFATC2IPQ8NCF5 419 aa28.78■■■□□ 2.2
PTPN4-202ENST00000420482 HMOX1P09601 288 aa28.77■■■□□ 2.2
PTPN4-202ENST00000420482 YBX3P16989 372 aaKnown RBP eCLIP28.77■■■□□ 2.2
PTPN4-202ENST00000420482 C1QTNF8P60827 252 aa28.77■■■□□ 2.2
PTPN4-202ENST00000420482 RC3H1Q5TC82 1133 aaKnown RBP28.77■■■□□ 2.2
PTPN4-202ENST00000420482 GRIN3BO60391 1043 aa28.76■■■□□ 2.19
PTPN4-202ENST00000420482 CNGB1Q14028 1251 aaPredicted RBP28.76■■■□□ 2.19
PTPN4-202ENST00000420482 TRAPPC3LQ5T215 181 aa28.76■■■□□ 2.19
PTPN4-202ENST00000420482 AMIGO3Q86WK7 504 aa28.76■■■□□ 2.19
PTPN4-202ENST00000420482 ADRA2BP18089 450 aa28.74■■■□□ 2.19
PTPN4-202ENST00000420482 CNTNAP4Q9C0A0 1308 aa28.73■■■□□ 2.19
PTPN4-202ENST00000420482 SCN11AQ9UI33 1791 aa28.73■■■□□ 2.19
PTPN4-202ENST00000420482 PTCD1O75127 700 aaKnown RBP28.73■■■□□ 2.19
PTPN4-202ENST00000420482 CFAP53Q96M91 514 aa28.72■■■□□ 2.19
PTPN4-202ENST00000420482 SLC4A9Q96Q91 983 aa28.72■■■□□ 2.19
PTPN4-202ENST00000420482 SMIM5Q71RC9 77 aa28.71■■■□□ 2.19
PTPN4-202ENST00000420482 SLC52A2Q9HAB3 445 aa28.71■■■□□ 2.19
PTPN4-202ENST00000420482 COL5A3P25940 1745 aaPredicted RBP28.7■■■□□ 2.19
PTPN4-202ENST00000420482 U2SURPO15042 1029 aaKnown RBP28.7■■■□□ 2.18
PTPN4-202ENST00000420482 SENP3-EIF4A1A0A087X0R7 540 aa28.69■■■□□ 2.18
PTPN4-202ENST00000420482 GIGYF1O75420 1035 aaPredicted RBP28.69■■■□□ 2.18
PTPN4-202ENST00000420482 RPS6KA4O75676 772 aa28.69■■■□□ 2.18
PTPN4-202ENST00000420482 RFC4P35249 363 aa28.69■■■□□ 2.18
PTPN4-202ENST00000420482 NLGN1Q8N2Q7 840 aa28.69■■■□□ 2.18
PTPN4-202ENST00000420482 RNMTO43148 476 aaKnown RBP28.67■■■□□ 2.18
PTPN4-202ENST00000420482 MTHFSDQ2M296 383 aaKnown RBP28.67■■■□□ 2.18
PTPN4-202ENST00000420482 LGR6Q9HBX8 967 aa28.66■■■□□ 2.18
PTPN4-202ENST00000420482 KIF13BQ9NQT8 1826 aa28.66■■■□□ 2.18
PTPN4-202ENST00000420482 ARHGEF1Q92888 912 aaKnown RBP28.65■■■□□ 2.18
PTPN4-202ENST00000420482 COL3A1P02461 1466 aaPredicted RBP28.65■■■□□ 2.18
PTPN4-202ENST00000420482 MMP10P09238 476 aa28.64■■■□□ 2.18
PTPN4-202ENST00000420482 GAS2L2Q8NHY3 880 aa28.64■■■□□ 2.18
PTPN4-202ENST00000420482 NUDCQ9Y266 331 aa28.64■■■□□ 2.18
PTPN4-202ENST00000420482 CRKLP46109 303 aaKnown RBP28.63■■■□□ 2.17
PTPN4-202ENST00000420482 MRC1P22897 1456 aa28.63■■■□□ 2.17
PTPN4-202ENST00000420482 CICQ96RK0 1608 aaPredicted RBP28.62■■■□□ 2.17
PTPN4-202ENST00000420482 KIAA1551Q9HCM1 1747 aa28.62■■■□□ 2.17
PTPN4-202ENST00000420482 ATP10DQ9P241 1426 aa28.61■■■□□ 2.17
PTPN4-202ENST00000420482 ADCY9O60503 1353 aa28.61■■■□□ 2.17
PTPN4-202ENST00000420482 TJP1Q07157 1748 aa28.58■■■□□ 2.17
PTPN4-202ENST00000420482 VIRMAQ69YN4 1812 aaKnown RBP28.58■■■□□ 2.17
PTPN4-202ENST00000420482 GNAT3A8MTJ3 354 aa28.58■■■□□ 2.17
PTPN4-202ENST00000420482 GYS1P13807 737 aa28.58■■■□□ 2.17
PTPN4-202ENST00000420482 TTC5Q8N0Z6 440 aa28.58■■■□□ 2.17
PTPN4-202ENST00000420482 PARP3Q9Y6F1 533 aa28.58■■■□□ 2.17
PTPN4-202ENST00000420482 ADAMTS7Q9UKP4 1686 aa28.58■■■□□ 2.16
PTPN4-202ENST00000420482 C4AP0C0L4 1744 aa28.57■■■□□ 2.16
PTPN4-202ENST00000420482 TEFQ10587 303 aa28.57■■■□□ 2.16
PTPN4-202ENST00000420482 CCDC87Q9NVE4 849 aa28.57■■■□□ 2.16
PTPN4-202ENST00000420482 MYH14Q7Z406 1995 aaKnown RBP28.57■■■□□ 2.16
PTPN4-202ENST00000420482 SLC39A6Q13433 755 aa28.56■■■□□ 2.16
PTPN4-202ENST00000420482 VSIG10Q8N0Z9 540 aa28.56■■■□□ 2.16
PTPN4-202ENST00000420482 DNAJC10Q8IXB1 793 aa28.55■■■□□ 2.16
PTPN4-202ENST00000420482 N4BP2Q86UW6 1770 aaPredicted RBP28.55■■■□□ 2.16
PTPN4-202ENST00000420482 PPP2R1AP30153 589 aa28.54■■■□□ 2.16
PTPN4-202ENST00000420482 TGFB2P61812 414 aa28.53■■■□□ 2.16
PTPN4-202ENST00000420482 USP42Q9H9J4 1324 aaKnown RBP28.52■■■□□ 2.16
PTPN4-202ENST00000420482 ZPR1O75312 459 aa28.52■■■□□ 2.16
PTPN4-202ENST00000420482 INTS5Q6P9B9 1019 aaKnown RBP28.52■■■□□ 2.16
PTPN4-202ENST00000420482 BRCA1P38398 1863 aaKnown RBP28.52■■■□□ 2.16
PTPN4-202ENST00000420482 PRKAR2BP31323 418 aa28.51■■■□□ 2.15
PTPN4-202ENST00000420482 KCPQ6ZWJ8 1503 aa28.5■■■□□ 2.15
PTPN4-202ENST00000420482 U2AF1L5P0DN76 240 aaPredicted RBP28.5■■■□□ 2.15
PTPN4-202ENST00000420482 CYP19A1P11511 503 aaPredicted RBP28.5■■■□□ 2.15
PTPN4-202ENST00000420482 U2AF1Q01081 240 aaKnown RBP eCLIP28.5■■■□□ 2.15
PTPN4-202ENST00000420482 PXDNLA1KZ92 1463 aa28.49■■■□□ 2.15
PTPN4-202ENST00000420482 STARD3NLO95772 234 aa28.49■■■□□ 2.15
PTPN4-202ENST00000420482 RSPH6AQ9H0K4 717 aa28.49■■■□□ 2.15
PTPN4-202ENST00000420482 TEX13AQ9BXU3 409 aaPredicted RBP28.48■■■□□ 2.15
PTPN4-202ENST00000420482 C10orf71Q711Q0 1435 aa28.48■■■□□ 2.15
PTPN4-202ENST00000420482 SOS1Q07889 1333 aaPredicted RBP28.47■■■□□ 2.15
PTPN4-202ENST00000420482 FCHSD2O94868 740 aa28.47■■■□□ 2.15
PTPN4-202ENST00000420482 IL17REQ8NFR9 667 aa28.47■■■□□ 2.15
PTPN4-202ENST00000420482 GPBP1L1Q9HC44 474 aaPredicted RBP28.47■■■□□ 2.15
PTPN4-202ENST00000420482 SRP68Q9UHB9 627 aaKnown RBP28.47■■■□□ 2.15
PTPN4-202ENST00000420482 WWC3Q9ULE0 1092 aa28.47■■■□□ 2.15
PTPN4-202ENST00000420482 ZNF790Q6PG37 636 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms