RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 CACNA1FO60840 1977 aa20.79■□□□□ 0.92
NUP50-203ENST00000407019 NBPF6Q5VWK0 638 aa20.79■□□□□ 0.92
NUP50-203ENST00000407019 NBPF4Q96M43 638 aa20.79■□□□□ 0.92
NUP50-203ENST00000407019 OSBPL3Q9H4L5 887 aa20.79■□□□□ 0.92
NUP50-203ENST00000407019 PHRF1Q9P1Y6 1649 aaKnown RBP20.78■□□□□ 0.92
NUP50-203ENST00000407019 MED1Q15648 1581 aaPredicted RBP20.78■□□□□ 0.92
NUP50-203ENST00000407019 HSP90AA1P07900 732 aaKnown RBP20.78■□□□□ 0.92
NUP50-203ENST00000407019 RABEP1Q15276 862 aa20.77■□□□□ 0.92
NUP50-203ENST00000407019 HDGFL1Q5TGJ6 251 aa20.77■□□□□ 0.92
NUP50-203ENST00000407019 USP26Q9BXU7 913 aa20.77■□□□□ 0.92
NUP50-203ENST00000407019 DDX11L8A8MPP1 907 aa20.77■□□□□ 0.92
NUP50-203ENST00000407019 PDE1AP54750 535 aa20.76■□□□□ 0.91
NUP50-203ENST00000407019 EXOC6BQ9Y2D4 811 aa20.76■□□□□ 0.91
NUP50-203ENST00000407019 ZBTB7CA1YPR0 619 aa20.76■□□□□ 0.91
NUP50-203ENST00000407019 ATP8B2P98198 1209 aa20.76■□□□□ 0.91
NUP50-203ENST00000407019 NPHP4O75161 1426 aaPredicted RBP20.75■□□□□ 0.91
NUP50-203ENST00000407019 LRRCC1Q9C099 1032 aa20.74■□□□□ 0.91
NUP50-203ENST00000407019 ADAMTSL3P82987 1691 aa20.74■□□□□ 0.91
NUP50-203ENST00000407019 RAB3GAP1Q15042 981 aa20.74■□□□□ 0.91
NUP50-203ENST00000407019 PNMA6EA0A0J9YXQ4 647 aa20.73■□□□□ 0.91
NUP50-203ENST00000407019 TRAK2O60296 914 aa20.73■□□□□ 0.91
NUP50-203ENST00000407019 REC8O95072 547 aa20.73■□□□□ 0.91
NUP50-203ENST00000407019 L1TD1Q5T7N2 865 aaKnown RBP20.73■□□□□ 0.91
NUP50-203ENST00000407019 TNPO1Q92973 898 aaKnown RBP20.73■□□□□ 0.91
NUP50-203ENST00000407019 LRRFIP2Q9Y608 721 aaKnown RBP20.73■□□□□ 0.91
NUP50-203ENST00000407019 IBTKQ9P2D0 1353 aaPredicted RBP20.73■□□□□ 0.91
NUP50-203ENST00000407019 HOXB7P09629 217 aa20.73■□□□□ 0.91
NUP50-203ENST00000407019 EIF4A1P60842 406 aaKnown RBP20.73■□□□□ 0.91
NUP50-203ENST00000407019 LMO7Q8WWI1 1683 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 SALL3Q9BXA9 1300 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 KDM3BQ7LBC6 1761 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 UBTFL1P0CB47 393 aaPredicted RBP20.72■□□□□ 0.91
NUP50-203ENST00000407019 GBP4Q96PP9 640 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 PHAXQ9H814 394 aaKnown RBP20.72■□□□□ 0.91
NUP50-203ENST00000407019 LGR6Q9HBX8 967 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 FOXD4L1Q9NU39 408 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 SLIT3O75094 1523 aa20.72■□□□□ 0.91
NUP50-203ENST00000407019 ERC2O15083 957 aa20.71■□□□□ 0.91
NUP50-203ENST00000407019 AKAP4Q5JQC9 854 aa20.71■□□□□ 0.91
NUP50-203ENST00000407019 CHMP4AQ9BY43 222 aa20.71■□□□□ 0.91
NUP50-203ENST00000407019 USP44Q9H0E7 712 aa20.71■□□□□ 0.91
NUP50-203ENST00000407019 PLEKHO1Q53GL0 409 aaPredicted RBP20.71■□□□□ 0.91
NUP50-203ENST00000407019 ZNF530Q6P9A1 599 aaPredicted RBP20.71■□□□□ 0.91
NUP50-203ENST00000407019 LRRC59Q96AG4 307 aaKnown RBP20.71■□□□□ 0.91
NUP50-203ENST00000407019 RGPD2P0DJD1 1756 aa20.7■□□□□ 0.91
NUP50-203ENST00000407019 EIF2S2P20042 333 aaKnown RBP20.69■□□□□ 0.9
NUP50-203ENST00000407019 MX1P20591 662 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 ORAI2Q96SN7 254 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 GCP02774 474 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 TEFQ10587 303 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 AMOTQ4VCS5 1084 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 ARHGEF25Q86VW2 580 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 NCAPD2Q15021 1401 aa20.69■□□□□ 0.9
NUP50-203ENST00000407019 SRCIN1Q9C0H9 1055 aa20.68■□□□□ 0.9
NUP50-203ENST00000407019 SETD1BQ9UPS6 1966 aaKnown RBP20.68■□□□□ 0.9
NUP50-203ENST00000407019 GZF1Q9H116 711 aaPredicted RBP20.67■□□□□ 0.9
NUP50-203ENST00000407019 BTBD11A6QL63 1104 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 XPCQ01831 940 aaPredicted RBP20.66■□□□□ 0.9
NUP50-203ENST00000407019 TSHZ3Q63HK5 1081 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 CHPF2Q9P2E5 772 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 TUBGCP6Q96RT7 1819 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 OVOS2A0A0G2JMS6 1433 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 ST18O60284 1047 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 PTMSP20962 102 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 SSH3Q8TE77 659 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 STAP2Q9UGK3 403 aa20.66■□□□□ 0.9
NUP50-203ENST00000407019 GOLGA6L3A6NEY3 463 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 KCNQ3O43525 872 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 C1orf141Q5JVX7 400 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 PXDNQ92626 1479 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 AOX1Q06278 1338 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 MPRIPQ6WCQ1 1025 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 ANKRD24Q8TF21 1146 aa20.65■□□□□ 0.9
NUP50-203ENST00000407019 RTN4Q9NQC3 1192 aaKnown RBP20.65■□□□□ 0.9
NUP50-203ENST00000407019 TRPM3Q9HCF6 1732 aaPredicted RBP20.64■□□□□ 0.89
NUP50-203ENST00000407019 FSD2A1L4K1 749 aa20.64■□□□□ 0.89
NUP50-203ENST00000407019 RNMTO43148 476 aaKnown RBP20.64■□□□□ 0.89
NUP50-203ENST00000407019 DNAAF4Q8WXU2 420 aa20.64■□□□□ 0.89
NUP50-203ENST00000407019 CAMTA1Q9Y6Y1 1673 aa20.64■□□□□ 0.89
NUP50-203ENST00000407019 LMOD2Q6P5Q4 547 aa20.63■□□□□ 0.89
NUP50-203ENST00000407019 ESYT1Q9BSJ8 1104 aa20.63■□□□□ 0.89
NUP50-203ENST00000407019 RAB11FIP3O75154 756 aa20.63■□□□□ 0.89
NUP50-203ENST00000407019 POLA2Q14181 598 aa20.63■□□□□ 0.89
NUP50-203ENST00000407019 KIF1AQ12756 1690 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 PLEKHG5O94827 1062 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 SSFA2P28290 1259 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 BEND3Q5T5X7 828 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 PPP1R42Q7Z4L9 355 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 PI4KAP2A4QPH2 592 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 TRIM6-TRIM34B2RNG4 842 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 PI4KAP1Q8N8J0 262 aa20.62■□□□□ 0.89
NUP50-203ENST00000407019 SKOR2Q2VWA4 1001 aaPredicted RBP20.61■□□□□ 0.89
NUP50-203ENST00000407019 CLEC17AQ6ZS10 378 aa20.61■□□□□ 0.89
NUP50-203ENST00000407019 KRT28Q7Z3Y7 464 aa20.61■□□□□ 0.89
NUP50-203ENST00000407019 RILPL2Q969X0 211 aa20.61■□□□□ 0.89
NUP50-203ENST00000407019 DBF4Q9UBU7 674 aaPredicted RBP20.6■□□□□ 0.89
NUP50-203ENST00000407019 SURF6O75683 361 aaKnown RBP20.6■□□□□ 0.89
NUP50-203ENST00000407019 CHMLP26374 656 aa20.6■□□□□ 0.89
NUP50-203ENST00000407019 PROSER2Q86WR7 435 aaPredicted RBP20.6■□□□□ 0.89
NUP50-203ENST00000407019 IL1RAPL2Q9NP60 686 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms