RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RHOQP17081 205 aa7.04□□□□□ -1.28
HMGB1-204ENST00000399489 EIF4G2P78344 907 aaKnown RBP eCLIP7.04□□□□□ -1.28
HMGB1-204ENST00000399489 H7C1W4 665 aa7.03□□□□□ -1.28
HMGB1-204ENST00000399489 RIPOR1Q6ZS17 1223 aa7.03□□□□□ -1.28
HMGB1-204ENST00000399489 SENP3-EIF4A1A0A087X0R7 540 aa7.02□□□□□ -1.29
HMGB1-204ENST00000399489 MAP3K10Q02779 954 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 CLN3Q13286 438 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 GNRH1P01148 92 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 TRIM22Q8IYM9 498 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 TRERF1Q96PN7 1200 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 GAS2L1Q99501 681 aaPredicted RBP7.01□□□□□ -1.29
HMGB1-204ENST00000399489 DYRK1BQ9Y463 629 aa7.01□□□□□ -1.29
HMGB1-204ENST00000399489 ITGB7P26010 798 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 SLFNL1Q499Z3 407 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 WDR44Q5JSH3 913 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 RNFT1Q5M7Z0 435 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 SIRT1Q96EB6 747 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 ARHGEF10LQ9HCE6 1279 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 CEP126Q9P2H0 1117 aa7□□□□□ -1.29
HMGB1-204ENST00000399489 SRSF11Q05519 484 aaKnown RBP6.99□□□□□ -1.29
HMGB1-204ENST00000399489 POU4F2Q12837 409 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 ESCO1Q5FWF5 840 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 TAS1R3Q7RTX0 852 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 GRIP2Q9C0E4 1043 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 OSBPL3Q9H4L5 887 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 TIMMDC1Q9NPL8 285 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 ENAMQ9NRM1 1142 aa6.99□□□□□ -1.29
HMGB1-204ENST00000399489 TRAK2O60296 914 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 TXKP42681 527 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 SCTRP47872 440 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 NBPF10Q6P3W6 841 aaKnown RBP6.98□□□□□ -1.29
HMGB1-204ENST00000399489 NBPF15Q8N660 670 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 NSFL1CQ9UNZ2 370 aaKnown RBP6.98□□□□□ -1.29
HMGB1-204ENST00000399489 TBC1D2BQ9UPU7 963 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 SPATA31C2B4DYI2 1134 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 ADAMTS2O95450 1211 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 USP4Q13107 963 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 GNASQ5JWF2 1037 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 ZNF837Q96EG3 531 aaPredicted RBP6.98□□□□□ -1.29
HMGB1-204ENST00000399489 MBIPQ9NS73 344 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 DOLKQ9UPQ8 538 aa6.98□□□□□ -1.29
HMGB1-204ENST00000399489 WASLO00401 505 aaPredicted RBP6.97□□□□□ -1.29
HMGB1-204ENST00000399489 WASHC4Q2M389 1173 aa6.97□□□□□ -1.29
HMGB1-204ENST00000399489 RNF135Q8IUD6 432 aa6.97□□□□□ -1.29
HMGB1-204ENST00000399489 ESYT1Q9BSJ8 1104 aa6.97□□□□□ -1.29
HMGB1-204ENST00000399489 GPR37L1O60883 481 aa6.96□□□□□ -1.29
HMGB1-204ENST00000399489 CNKSR1Q969H4 720 aa6.96□□□□□ -1.29
HMGB1-204ENST00000399489 ZSCAN10Q96SZ4 725 aaPredicted RBP6.96□□□□□ -1.29
HMGB1-204ENST00000399489 CUEDC1Q9NWM3 386 aaPredicted RBP6.96□□□□□ -1.29
HMGB1-204ENST00000399489 F11P03951 625 aa6.96□□□□□ -1.3
HMGB1-204ENST00000399489 TMEM214Q6NUQ4 689 aaKnown RBP6.96□□□□□ -1.3
HMGB1-204ENST00000399489 CCDC85AQ96PX6 553 aaPredicted RBP6.96□□□□□ -1.3
HMGB1-204ENST00000399489 NUCKS1Q9H1E3 243 aaKnown RBP6.96□□□□□ -1.3
HMGB1-204ENST00000399489 ZFP64Q9NPA5 681 aa6.96□□□□□ -1.3
HMGB1-204ENST00000399489 RAB6BQ9NRW1 208 aa6.96□□□□□ -1.3
HMGB1-204ENST00000399489 SCO2A0A1W2PP80 73 aa6.95□□□□□ -1.3
HMGB1-204ENST00000399489 ABL2P42684 1182 aa6.95□□□□□ -1.3
HMGB1-204ENST00000399489 CENPCQ03188 943 aa6.95□□□□□ -1.3
HMGB1-204ENST00000399489 WWC1Q8IX03 1113 aa6.95□□□□□ -1.3
HMGB1-204ENST00000399489 GTPBP3Q969Y2 492 aaKnown RBP6.95□□□□□ -1.3
HMGB1-204ENST00000399489 PHF24Q9UPV7 400 aa6.95□□□□□ -1.3
HMGB1-204ENST00000399489 CSB-PGBD3P0DP91 1061 aa6.94□□□□□ -1.3
HMGB1-204ENST00000399489 DBN1Q16643 649 aa6.94□□□□□ -1.3
HMGB1-204ENST00000399489 NBPF11Q86T75 865 aa6.94□□□□□ -1.3
HMGB1-204ENST00000399489 PGBD3Q8N328 593 aa6.94□□□□□ -1.3
HMGB1-204ENST00000399489 XAGE2Q96GT9 111 aa6.94□□□□□ -1.3
HMGB1-204ENST00000399489 SOX11P35716 441 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 SEMA3FQ13275 785 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 OXLD1Q5BKU9 147 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 ARTNQ5T4W7 220 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 CDCA7Q9BWT1 371 aaPredicted RBP6.93□□□□□ -1.3
HMGB1-204ENST00000399489 A0A1B0GTH6 734 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 GPR25O00155 361 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 IL2RAP01589 272 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 MX2P20592 715 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 GAS6Q14393 721 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 LYPD4Q6UWN0 246 aa6.93□□□□□ -1.3
HMGB1-204ENST00000399489 IGF1RP08069 1367 aa6.92□□□□□ -1.3
HMGB1-204ENST00000399489 CELA2BP08218 269 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-204ENST00000399489 VAC14Q08AM6 782 aa6.92□□□□□ -1.3
HMGB1-204ENST00000399489 LBRQ14739 615 aaKnown RBP6.92□□□□□ -1.3
HMGB1-204ENST00000399489 MAP7D1Q3KQU3 841 aa6.92□□□□□ -1.3
HMGB1-204ENST00000399489 BEND7Q8N7W2 519 aaPredicted RBP6.92□□□□□ -1.3
HMGB1-204ENST00000399489 GDPD2Q9HCC8 539 aa6.92□□□□□ -1.3
HMGB1-204ENST00000399489 PHKA2P46019 1235 aa6.91□□□□□ -1.3
HMGB1-204ENST00000399489 IRF5Q13568 498 aa6.91□□□□□ -1.3
HMGB1-204ENST00000399489 PODNQ7Z5L7 613 aa6.91□□□□□ -1.3
HMGB1-204ENST00000399489 NEDD1Q8NHV4 660 aa6.91□□□□□ -1.3
HMGB1-204ENST00000399489 ZMYND15Q9H091 742 aa6.91□□□□□ -1.3
HMGB1-204ENST00000399489 BCRP11274 1271 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 MAP2K3P46734 347 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 TLR1Q15399 786 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 EFHC2Q5JST6 749 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 PHTF2Q8N3S3 785 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 CFHR5Q9BXR6 569 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 GPAMQ9HCL2 828 aa6.9□□□□□ -1.3
HMGB1-204ENST00000399489 RHBDD1Q8TEB9 315 aa6.9□□□□□ -1.31
HMGB1-204ENST00000399489 CCDC9Q9Y3X0 531 aaKnown RBP6.9□□□□□ -1.31
HMGB1-204ENST00000399489 CNTNAP5Q8WYK1 1306 aa6.88□□□□□ -1.31
HMGB1-204ENST00000399489 C4orf17Q53FE4 359 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms