RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 RRP7AQ9Y3A4 280 aaKnown RBP25.32■■□□□ 1.64
HOXA9-202ENST00000396345 TEFQ10587 303 aa25.31■■□□□ 1.64
HOXA9-202ENST00000396345 SMARCC1Q92922 1105 aaPredicted RBP25.31■■□□□ 1.64
HOXA9-202ENST00000396345 MRC1P22897 1456 aa25.31■■□□□ 1.64
HOXA9-202ENST00000396345 CEMIPQ8WUJ3 1361 aa25.31■■□□□ 1.64
HOXA9-202ENST00000396345 DCTN1Q14203 1278 aa25.3■■□□□ 1.64
HOXA9-202ENST00000396345 NEUROD2Q15784 382 aa25.3■■□□□ 1.64
HOXA9-202ENST00000396345 TXNRD1Q16881 649 aa25.3■■□□□ 1.64
HOXA9-202ENST00000396345 ASAP1Q9ULH1 1129 aa25.3■■□□□ 1.64
HOXA9-202ENST00000396345 APAF1O14727 1248 aa25.29■■□□□ 1.64
HOXA9-202ENST00000396345 PROM2Q8N271 834 aa25.29■■□□□ 1.64
HOXA9-202ENST00000396345 ATG3Q9NT62 314 aa25.29■■□□□ 1.64
HOXA9-202ENST00000396345 PALLDQ8WX93 1383 aa25.29■■□□□ 1.64
HOXA9-202ENST00000396345 RREB1Q92766 1687 aa25.28■■□□□ 1.64
HOXA9-202ENST00000396345 LY75O60449 1722 aa25.27■■□□□ 1.64
HOXA9-202ENST00000396345 LMOD3Q0VAK6 560 aa25.27■■□□□ 1.64
HOXA9-202ENST00000396345 SIPA1L3O60292 1781 aaPredicted RBP25.25■■□□□ 1.63
HOXA9-202ENST00000396345 SLC27A3Q5K4L6 730 aa25.24■■□□□ 1.63
HOXA9-202ENST00000396345 NUP188Q5SRE5 1749 aa25.23■■□□□ 1.63
HOXA9-202ENST00000396345 THUMPD2Q9BTF0 503 aaKnown RBP25.23■■□□□ 1.63
HOXA9-202ENST00000396345 CCNL1Q9UK58 526 aaPredicted RBP25.23■■□□□ 1.63
HOXA9-202ENST00000396345 SLC39A6Q13433 755 aa25.22■■□□□ 1.63
HOXA9-202ENST00000396345 LRRC4BQ9NT99 713 aa25.22■■□□□ 1.63
HOXA9-202ENST00000396345 TRIM35Q9UPQ4 493 aa25.22■■□□□ 1.63
HOXA9-202ENST00000396345 BTBD11A6QL63 1104 aa25.21■■□□□ 1.63
HOXA9-202ENST00000396345 KCNQ4P56696 695 aa25.21■■□□□ 1.63
HOXA9-202ENST00000396345 TAF7Q15545 349 aaPredicted RBP25.21■■□□□ 1.63
HOXA9-202ENST00000396345 RBM42Q9BTD8 480 aaKnown RBP25.21■■□□□ 1.63
HOXA9-202ENST00000396345 SRCAPQ6ZRS2 3230 aa25.21■■□□□ 1.63
HOXA9-202ENST00000396345 PAPPAQ13219 1627 aa25.2■■□□□ 1.62
HOXA9-202ENST00000396345 LOC102724428A0A0B4J2F2 783 aa25.2■■□□□ 1.62
HOXA9-202ENST00000396345 SIK1P57059 783 aa25.2■■□□□ 1.62
HOXA9-202ENST00000396345 SENP3-EIF4A1A0A087X0R7 540 aa25.19■■□□□ 1.62
HOXA9-202ENST00000396345 PTCD1O75127 700 aaKnown RBP25.19■■□□□ 1.62
HOXA9-202ENST00000396345 TTC5Q8N0Z6 440 aa25.19■■□□□ 1.62
HOXA9-202ENST00000396345 NBPF14Q5TI25 921 aa25.18■■□□□ 1.62
HOXA9-202ENST00000396345 ATP6V1AP38606 617 aa25.17■■□□□ 1.62
HOXA9-202ENST00000396345 ZNF790Q6PG37 636 aa25.17■■□□□ 1.62
HOXA9-202ENST00000396345 HMGB2P26583 209 aaKnown RBP25.15■■□□□ 1.62
HOXA9-202ENST00000396345 SLC4A9Q96Q91 983 aa25.15■■□□□ 1.62
HOXA9-202ENST00000396345 MIS18AQ9NYP9 233 aa25.15■■□□□ 1.62
HOXA9-202ENST00000396345 KCPQ6ZWJ8 1503 aa25.14■■□□□ 1.62
HOXA9-202ENST00000396345 KCNQ3O43525 872 aa25.14■■□□□ 1.62
HOXA9-202ENST00000396345 NCBP3Q53F19 620 aaKnown RBP25.14■■□□□ 1.62
HOXA9-202ENST00000396345 UBR2Q8IWV8 1755 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 ITPK1Q13572 414 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 STK32BQ9NY57 414 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 TAF1LQ8IZX4 1826 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 C5P01031 1676 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 ZNF831Q5JPB2 1677 aa25.13■■□□□ 1.61
HOXA9-202ENST00000396345 CCDC27Q2M243 656 aa25.12■■□□□ 1.61
HOXA9-202ENST00000396345 ANO8Q9HCE9 1232 aaPredicted RBP25.12■■□□□ 1.61
HOXA9-202ENST00000396345 CALD1Q05682 793 aaKnown RBP25.11■■□□□ 1.61
HOXA9-202ENST00000396345 ZNF496Q96IT1 587 aaPredicted RBP25.11■■□□□ 1.61
HOXA9-202ENST00000396345 FMNL2Q96PY5 1086 aa25.11■■□□□ 1.61
HOXA9-202ENST00000396345 SALL2Q9Y467 1007 aaPredicted RBP25.11■■□□□ 1.61
HOXA9-202ENST00000396345 LINC00116Q8NCU8 138 aa25.1■■□□□ 1.61
HOXA9-202ENST00000396345 BABAM1Q9NWV8 329 aa25.1■■□□□ 1.61
HOXA9-202ENST00000396345 TSPYL4Q9UJ04 414 aa25.1■■□□□ 1.61
HOXA9-202ENST00000396345 KDM3BQ7LBC6 1761 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 SLC15A2Q16348 729 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 ZNF827Q17R98 1081 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 WWC1Q8IX03 1113 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 VSIG10Q8N0Z9 540 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 NGEFQ8N5V2 710 aa25.09■■□□□ 1.61
HOXA9-202ENST00000396345 LAS1LQ9Y4W2 734 aaKnown RBP25.09■■□□□ 1.61
HOXA9-202ENST00000396345 R3HDM1Q15032 1099 aaKnown RBP25.08■■□□□ 1.61
HOXA9-202ENST00000396345 AKT1S1Q96B36 256 aa25.08■■□□□ 1.61
HOXA9-202ENST00000396345 HEG1Q9ULI3 1381 aa25.07■■□□□ 1.6
HOXA9-202ENST00000396345 C4BP0C0L5 1744 aa25.07■■□□□ 1.6
HOXA9-202ENST00000396345 TJP1Q07157 1748 aa25.07■■□□□ 1.6
HOXA9-202ENST00000396345 DNAJC10Q8IXB1 793 aa25.07■■□□□ 1.6
HOXA9-202ENST00000396345 CICQ96RK0 1608 aaPredicted RBP25.06■■□□□ 1.6
HOXA9-202ENST00000396345 PSDA5PKW4 1024 aaPredicted RBP25.06■■□□□ 1.6
HOXA9-202ENST00000396345 CHL1O00533 1208 aa25.06■■□□□ 1.6
HOXA9-202ENST00000396345 CFAP44Q96MT7 982 aa25.06■■□□□ 1.6
HOXA9-202ENST00000396345 COL5A3P25940 1745 aaPredicted RBP25.06■■□□□ 1.6
HOXA9-202ENST00000396345 EIF4A1P60842 406 aaKnown RBP25.04■■□□□ 1.6
HOXA9-202ENST00000396345 AK7Q96M32 723 aa25.04■■□□□ 1.6
HOXA9-202ENST00000396345 TEX13AQ9BXU3 409 aaPredicted RBP25.04■■□□□ 1.6
HOXA9-202ENST00000396345 IFT57Q9NWB7 429 aa25.04■■□□□ 1.6
HOXA9-202ENST00000396345 TFCP2L1Q9NZI6 479 aa25.04■■□□□ 1.6
HOXA9-202ENST00000396345 ZNF853P0CG23 659 aa25.03■■□□□ 1.6
HOXA9-202ENST00000396345 GNAI1P63096 354 aa25.03■■□□□ 1.6
HOXA9-202ENST00000396345 SNRPA1P09661 255 aaKnown RBP25.02■■□□□ 1.6
HOXA9-202ENST00000396345 RC3H1Q5TC82 1133 aaKnown RBP25.02■■□□□ 1.6
HOXA9-202ENST00000396345 STARD3NLO95772 234 aa25.01■■□□□ 1.59
HOXA9-202ENST00000396345 CYP19A1P11511 503 aaPredicted RBP25.01■■□□□ 1.59
HOXA9-202ENST00000396345 CRKLP46109 303 aaKnown RBP25.01■■□□□ 1.59
HOXA9-202ENST00000396345 WDR63Q8IWG1 891 aa25.01■■□□□ 1.59
HOXA9-202ENST00000396345 CNTNAP4Q9C0A0 1308 aa25.01■■□□□ 1.59
HOXA9-202ENST00000396345 GNPATO15228 680 aa25■■□□□ 1.59
HOXA9-202ENST00000396345 MBIPQ9NS73 344 aa25■■□□□ 1.59
HOXA9-202ENST00000396345 IL16Q14005 1332 aa25■■□□□ 1.59
HOXA9-202ENST00000396345 TUBGCP6Q96RT7 1819 aa25■■□□□ 1.59
HOXA9-202ENST00000396345 PRAMEF22A3QJZ6 481 aa24.99■■□□□ 1.59
HOXA9-202ENST00000396345 MYH14Q7Z406 1995 aaKnown RBP24.98■■□□□ 1.59
HOXA9-202ENST00000396345 QSER1Q2KHR3 1735 aa24.98■■□□□ 1.59
HOXA9-202ENST00000396345 CCDC87Q9NVE4 849 aa24.98■■□□□ 1.59
HOXA9-202ENST00000396345 PNPLA7Q6ZV29 1317 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms