RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ESYT1Q9BSJ8 1104 aa15.53■□□□□ 0.08
SHMT1-205ENST00000395684 PALD1Q9ULE6 856 aa15.53■□□□□ 0.08
SHMT1-205ENST00000395684 ARHGEF10O15013 1369 aa15.53■□□□□ 0.08
SHMT1-205ENST00000395684 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.53■□□□□ 0.08
SHMT1-205ENST00000395684 LRRCC1Q9C099 1032 aa15.52■□□□□ 0.08
SHMT1-205ENST00000395684 TMEM63CQ9P1W3 806 aa15.52■□□□□ 0.08
SHMT1-205ENST00000395684 ADAMTS13Q76LX8 1427 aa15.52■□□□□ 0.08
SHMT1-205ENST00000395684 TMEM2Q9UHN6 1383 aa15.52■□□□□ 0.08
SHMT1-205ENST00000395684 ESF1Q9H501 851 aaKnown RBP15.52■□□□□ 0.07
SHMT1-205ENST00000395684 SSH2Q76I76 1423 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 MX1P20591 662 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 EYA1Q99502 592 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 FLIIQ13045 1269 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 NALCNQ8IZF0 1738 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 RIMS1Q86UR5 1692 aaKnown RBP15.51■□□□□ 0.07
SHMT1-205ENST00000395684 CHMLP26374 656 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 ATP8B2P98198 1209 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 PDLIM2Q96JY6 352 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 STK31Q9BXU1 1019 aa15.51■□□□□ 0.07
SHMT1-205ENST00000395684 KDRP35968 1356 aa15.5■□□□□ 0.07
SHMT1-205ENST00000395684 FKBP5Q13451 457 aaPredicted RBP15.5■□□□□ 0.07
SHMT1-205ENST00000395684 NECTIN2Q92692 538 aa15.5■□□□□ 0.07
SHMT1-205ENST00000395684 TOPAZ1Q8N9V7 1692 aa15.5■□□□□ 0.07
SHMT1-205ENST00000395684 CUL4AQ13619 759 aa15.5■□□□□ 0.07
SHMT1-205ENST00000395684 RILPL2Q969X0 211 aa15.5■□□□□ 0.07
SHMT1-205ENST00000395684 TNRQ92752 1358 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 SYCE3A1L190 88 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 TRIM6-TRIM34B2RNG4 842 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 BRD1O95696 1058 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 GNAI3P08754 354 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 LTKP29376 864 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 HSP90AA2PQ14568 343 aaPredicted RBP15.49■□□□□ 0.07
SHMT1-205ENST00000395684 UNC5CLQ8IV45 518 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 ANO2Q9NQ90 1003 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 MSNP26038 577 aaKnown RBP15.49■□□□□ 0.07
SHMT1-205ENST00000395684 MCM2P49736 904 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 LRSAM1Q6UWE0 723 aa15.49■□□□□ 0.07
SHMT1-205ENST00000395684 CEP170BQ9Y4F5 1589 aaPredicted RBP15.48■□□□□ 0.07
SHMT1-205ENST00000395684 IGSF1Q8N6C5 1336 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 SBNO1A3KN83 1393 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 FLT4P35916 1363 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 NOL8Q76FK4 1167 aaKnown RBP15.48■□□□□ 0.07
SHMT1-205ENST00000395684 RRP9O43818 475 aaKnown RBP15.48■□□□□ 0.07
SHMT1-205ENST00000395684 HS1BP3Q53T59 392 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 CCDC30Q5VVM6 783 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 KIAA1211Q6ZU35 1233 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.48■□□□□ 0.07
SHMT1-205ENST00000395684 STAP2Q9UGK3 403 aa15.48■□□□□ 0.07
SHMT1-205ENST00000395684 LRRFIP2Q9Y608 721 aaKnown RBP15.48■□□□□ 0.07
SHMT1-205ENST00000395684 OFD1O75665 1012 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 IL25Q9H293 177 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 MCCP23508 829 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 AMPHP49418 695 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 ANAPC15P60006 121 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 SLC26A8Q96RN1 970 aa15.47■□□□□ 0.07
SHMT1-205ENST00000395684 NOL7Q9UMY1 257 aaKnown RBP15.47■□□□□ 0.07
SHMT1-205ENST00000395684 USP44Q9H0E7 712 aa15.46■□□□□ 0.07
SHMT1-205ENST00000395684 TTC21AQ8NDW8 1320 aa15.46■□□□□ 0.07
SHMT1-205ENST00000395684 INTS4Q96HW7 963 aaKnown RBP15.46■□□□□ 0.07
SHMT1-205ENST00000395684 UPF3BQ9BZI7 483 aaKnown RBP15.46■□□□□ 0.07
SHMT1-205ENST00000395684 PTPRUQ92729 1446 aa15.46■□□□□ 0.06
SHMT1-205ENST00000395684 TUBGCP6Q96RT7 1819 aa15.45■□□□□ 0.06
SHMT1-205ENST00000395684 TPM2P07951 284 aa15.45■□□□□ 0.06
SHMT1-205ENST00000395684 IL17RAQ96F46 866 aa15.45■□□□□ 0.06
SHMT1-205ENST00000395684 GNAT3A8MTJ3 354 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 HTATSF1O43719 755 aaKnown RBP15.44■□□□□ 0.06
SHMT1-205ENST00000395684 MBD3O95983 291 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 IL17REQ8NFR9 667 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 SRCIN1Q9C0H9 1055 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 IL1RAPL2Q9NP60 686 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 UBR1Q8IWV7 1749 aa15.44■□□□□ 0.06
SHMT1-205ENST00000395684 PLEKHG1Q9ULL1 1385 aa15.43■□□□□ 0.06
SHMT1-205ENST00000395684 NGDNQ8NEJ9 315 aaKnown RBP15.43■□□□□ 0.06
SHMT1-205ENST00000395684 XRN1Q8IZH2 1706 aaKnown RBP15.43■□□□□ 0.06
SHMT1-205ENST00000395684 FOXD4L6Q3SYB3 417 aaPredicted RBP15.42■□□□□ 0.06
SHMT1-205ENST00000395684 FOXD4L3Q6VB84 417 aaPredicted RBP15.42■□□□□ 0.06
SHMT1-205ENST00000395684 NUTM1Q86Y26 1132 aa15.42■□□□□ 0.06
SHMT1-205ENST00000395684 RNF214Q8ND24 703 aa15.42■□□□□ 0.06
SHMT1-205ENST00000395684 FMN2Q9NZ56 1722 aa15.42■□□□□ 0.06
SHMT1-205ENST00000395684 ZNF500O60304 480 aaPredicted RBP15.42■□□□□ 0.06
SHMT1-205ENST00000395684 UBTFL1P0CB47 393 aaPredicted RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 SSH3Q8TE77 659 aa15.41■□□□□ 0.06
SHMT1-205ENST00000395684 PHAXQ9H814 394 aaKnown RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 GDPD2Q9HCC8 539 aa15.41■□□□□ 0.06
SHMT1-205ENST00000395684 AMOTL2Q9Y2J4 779 aa15.41■□□□□ 0.06
SHMT1-205ENST00000395684 SOS1Q07889 1333 aaPredicted RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 MAP4K4O95819 1239 aaPredicted RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 HSPA4P34932 840 aa15.41■□□□□ 0.06
SHMT1-205ENST00000395684 FAM208AQ9UK61 1670 aaKnown RBP15.41■□□□□ 0.06
SHMT1-205ENST00000395684 GADD45BO75293 160 aaPredicted RBP15.4■□□□□ 0.06
SHMT1-205ENST00000395684 XPCQ01831 940 aaPredicted RBP15.4■□□□□ 0.06
SHMT1-205ENST00000395684 TAF7Q15545 349 aaPredicted RBP15.4■□□□□ 0.06
SHMT1-205ENST00000395684 AOX1Q06278 1338 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 NLRP6P59044 892 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 PPP1R42Q7Z4L9 355 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 ZKSCAN5Q9Y2L8 839 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 LRRC37A3O60309 1634 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 HOXC9P31274 260 aa15.4■□□□□ 0.06
SHMT1-205ENST00000395684 NUTM2GQ5VZR2 741 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms