RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 XPCQ01831 940 aaPredicted RBP28.91■■■□□ 2.22
VPS16-201ENST00000380443 ANKRD24Q8TF21 1146 aa28.91■■■□□ 2.22
VPS16-201ENST00000380443 LNPKQ9C0E8 428 aa28.91■■■□□ 2.22
VPS16-201ENST00000380443 SOS2Q07890 1332 aaPredicted RBP28.91■■■□□ 2.22
VPS16-201ENST00000380443 LMOD2Q6P5Q4 547 aa28.9■■■□□ 2.22
VPS16-201ENST00000380443 TBC1D32Q96NH3 1257 aa28.9■■■□□ 2.22
VPS16-201ENST00000380443 FAM208AQ9UK61 1670 aaKnown RBP28.9■■■□□ 2.22
VPS16-201ENST00000380443 ZBTB7CA1YPR0 619 aa28.9■■■□□ 2.22
VPS16-201ENST00000380443 BMP2KLQ5H9B9 411 aa28.9■■■□□ 2.22
VPS16-201ENST00000380443 PLEKHG2Q9H7P9 1386 aa28.89■■■□□ 2.22
VPS16-201ENST00000380443 JCADQ9P266 1359 aa28.89■■■□□ 2.22
VPS16-201ENST00000380443 EIF5BO60841 1220 aaKnown RBP28.88■■■□□ 2.21
VPS16-201ENST00000380443 ATP10DQ9P241 1426 aa28.88■■■□□ 2.21
VPS16-201ENST00000380443 BECN1Q14457 450 aa28.87■■■□□ 2.21
VPS16-201ENST00000380443 RGPD2P0DJD1 1756 aa28.87■■■□□ 2.21
VPS16-201ENST00000380443 ZNF530Q6P9A1 599 aaPredicted RBP28.87■■■□□ 2.21
VPS16-201ENST00000380443 ABCC6O95255 1503 aa28.87■■■□□ 2.21
VPS16-201ENST00000380443 PXDNLA1KZ92 1463 aa28.86■■■□□ 2.21
VPS16-201ENST00000380443 FLIIQ13045 1269 aa28.86■■■□□ 2.21
VPS16-201ENST00000380443 HMMRO75330 724 aa28.85■■■□□ 2.21
VPS16-201ENST00000380443 C1orf141Q5JVX7 400 aa28.85■■■□□ 2.21
VPS16-201ENST00000380443 CEP85Q6P2H3 762 aa28.85■■■□□ 2.21
VPS16-201ENST00000380443 G2E3Q7L622 706 aa28.85■■■□□ 2.21
VPS16-201ENST00000380443 PXDNQ92626 1479 aa28.85■■■□□ 2.21
VPS16-201ENST00000380443 TEFQ10587 303 aa28.84■■■□□ 2.21
VPS16-201ENST00000380443 KDM3BQ7LBC6 1761 aa28.84■■■□□ 2.21
VPS16-201ENST00000380443 GNAI3P08754 354 aa28.82■■■□□ 2.2
VPS16-201ENST00000380443 EIF4A1P60842 406 aaKnown RBP28.82■■■□□ 2.2
VPS16-201ENST00000380443 USP35Q9P2H5 1018 aa28.82■■■□□ 2.2
VPS16-201ENST00000380443 MEIS3Q99687 375 aa28.81■■■□□ 2.2
VPS16-201ENST00000380443 N4BP2Q86UW6 1770 aaPredicted RBP28.81■■■□□ 2.2
VPS16-201ENST00000380443 ERBB3P21860 1342 aa28.81■■■□□ 2.2
VPS16-201ENST00000380443 HDGFL1Q5TGJ6 251 aa28.8■■■□□ 2.2
VPS16-201ENST00000380443 TNS3Q68CZ2 1445 aa28.8■■■□□ 2.2
VPS16-201ENST00000380443 RNMTO43148 476 aaKnown RBP28.8■■■□□ 2.2
VPS16-201ENST00000380443 FKBP5Q13451 457 aaPredicted RBP28.8■■■□□ 2.2
VPS16-201ENST00000380443 LGR6Q9HBX8 967 aa28.8■■■□□ 2.2
VPS16-201ENST00000380443 AXIN2Q9Y2T1 843 aa28.79■■■□□ 2.2
VPS16-201ENST00000380443 GNAI2P04899 355 aa28.78■■■□□ 2.2
VPS16-201ENST00000380443 SLC4A10Q6U841 1118 aa28.78■■■□□ 2.2
VPS16-201ENST00000380443 SPATA31A6Q5VVP1 1343 aa28.78■■■□□ 2.2
VPS16-201ENST00000380443 BTBD11A6QL63 1104 aa28.77■■■□□ 2.2
VPS16-201ENST00000380443 RTL5Q5HYW3 569 aaPredicted RBP28.76■■■□□ 2.19
VPS16-201ENST00000380443 C22orf23Q9BZE7 217 aa28.76■■■□□ 2.19
VPS16-201ENST00000380443 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.76■■■□□ 2.194e-6■□□□□ 11.2
VPS16-201ENST00000380443 F6X3S4 739 aa28.76■■■□□ 2.19
VPS16-201ENST00000380443 ADAMTS7Q9UKP4 1686 aa28.75■■■□□ 2.19
VPS16-201ENST00000380443 SPATA31A3Q5VYP0 1347 aa28.75■■■□□ 2.19
VPS16-201ENST00000380443 MPRIPQ6WCQ1 1025 aa28.73■■■□□ 2.19
VPS16-201ENST00000380443 COL18A1P39060 1754 aa28.72■■■□□ 2.19
VPS16-201ENST00000380443 CPDO75976 1380 aa28.72■■■□□ 2.19
VPS16-201ENST00000380443 ZC3H6P61129 1189 aaKnown RBP28.72■■■□□ 2.19
VPS16-201ENST00000380443 RAPGEF4Q8WZA2 1011 aa28.72■■■□□ 2.19
VPS16-201ENST00000380443 RGPD5Q99666 1765 aa28.71■■■□□ 2.19
VPS16-201ENST00000380443 NBR1Q14596 966 aa28.71■■■□□ 2.19
VPS16-201ENST00000380443 PLEKHM2Q8IWE5 1019 aa28.71■■■□□ 2.19
VPS16-201ENST00000380443 MFAP1P55081 439 aaKnown RBP28.71■■■□□ 2.19
VPS16-201ENST00000380443 SLC4A3P48751 1232 aa28.7■■■□□ 2.18
VPS16-201ENST00000380443 HEG1Q9ULI3 1381 aa28.7■■■□□ 2.18
VPS16-201ENST00000380443 TATP17735 454 aaPredicted RBP28.69■■■□□ 2.18
VPS16-201ENST00000380443 SPG7Q9UQ90 795 aa28.69■■■□□ 2.18
VPS16-201ENST00000380443 RBM25P49756 843 aaKnown RBP28.69■■■□□ 2.18
VPS16-201ENST00000380443 COL22A1Q8NFW1 1626 aaPredicted RBP28.68■■■□□ 2.18
VPS16-201ENST00000380443 ATP8B2P98198 1209 aa28.68■■■□□ 2.18
VPS16-201ENST00000380443 NECTIN2Q92692 538 aa28.68■■■□□ 2.18
VPS16-201ENST00000380443 SIPA1L3O60292 1781 aaPredicted RBP28.67■■■□□ 2.18
VPS16-201ENST00000380443 CDC45O75419 566 aa28.67■■■□□ 2.18
VPS16-201ENST00000380443 DBF4Q9UBU7 674 aaPredicted RBP28.66■■■□□ 2.18
VPS16-201ENST00000380443 CRYBG1Q9Y4K1 1723 aa28.66■■■□□ 2.18
VPS16-201ENST00000380443 NLRP2Q9NX02 1062 aa28.66■■■□□ 2.18
VPS16-201ENST00000380443 NUTM2BA6NNL0 878 aaPredicted RBP28.65■■■□□ 2.18
VPS16-201ENST00000380443 NUTM2EB1AL46 878 aaPredicted RBP28.65■■■□□ 2.18
VPS16-201ENST00000380443 PLEKHG5O94827 1062 aa28.65■■■□□ 2.18
VPS16-201ENST00000380443 TTC22Q5TAA0 569 aa28.65■■■□□ 2.18
VPS16-201ENST00000380443 NUTM2AQ8IVF1 878 aaPredicted RBP28.65■■■□□ 2.18
VPS16-201ENST00000380443 EIF2S2P20042 333 aaKnown RBP28.64■■■□□ 2.18
VPS16-201ENST00000380443 SRCIN1Q9C0H9 1055 aa28.64■■■□□ 2.18
VPS16-201ENST00000380443 OSBPL3Q9H4L5 887 aa28.63■■■□□ 2.17
VPS16-201ENST00000380443 GIGYF1O75420 1035 aaPredicted RBP28.62■■■□□ 2.17
VPS16-201ENST00000380443 UBTFL1P0CB47 393 aaPredicted RBP28.62■■■□□ 2.17
VPS16-201ENST00000380443 MEX3CQ5U5Q3 659 aaKnown RBP28.62■■■□□ 2.17
VPS16-201ENST00000380443 PHAXQ9H814 394 aaKnown RBP28.62■■■□□ 2.17
VPS16-201ENST00000380443 CHPF2Q9P2E5 772 aa28.62■■■□□ 2.17
VPS16-201ENST00000380443 KCNQ3O43525 872 aa28.62■■■□□ 2.17
VPS16-201ENST00000380443 USP44Q9H0E7 712 aa28.62■■■□□ 2.17
VPS16-201ENST00000380443 TBC1D9Q6ZT07 1266 aa28.61■■■□□ 2.17
VPS16-201ENST00000380443 DNAAF4Q8WXU2 420 aa28.61■■■□□ 2.17
VPS16-201ENST00000380443 HSP90AB1P08238 724 aaKnown RBP28.6■■■□□ 2.17
VPS16-201ENST00000380443 IFNL2Q8IZJ0 200 aa28.6■■■□□ 2.17
VPS16-201ENST00000380443 HDAC5Q9UQL6 1122 aa28.6■■■□□ 2.17
VPS16-201ENST00000380443 LRP6O75581 1613 aa28.6■■■□□ 2.17
VPS16-201ENST00000380443 CSB-PGBD3P0DP91 1061 aa28.59■■■□□ 2.17
VPS16-201ENST00000380443 TBC1D2Q9BYX2 928 aa28.59■■■□□ 2.17
VPS16-201ENST00000380443 SCN11AQ9UI33 1791 aa28.59■■■□□ 2.17
VPS16-201ENST00000380443 GSPT1P15170 499 aaKnown RBP28.59■■■□□ 2.17
VPS16-201ENST00000380443 PHKG2P15735 406 aa28.59■■■□□ 2.17
VPS16-201ENST00000380443 HYPKQ9NX55 129 aa28.59■■■□□ 2.17
VPS16-201ENST00000380443 SLC52A2Q9HAB3 445 aa28.57■■■□□ 2.16
VPS16-201ENST00000380443 BEND3Q5T5X7 828 aa28.57■■■□□ 2.16
VPS16-201ENST00000380443 CASC1Q6TDU7 716 aa28.57■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms