RNA–Protein interactions for RNA: ENST00000378821.3

TMEM88B-201, Transcript of transmembrane protein 88B, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TMEM88B, Length 492 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88B-201ENST00000378821 AK7Q96M32 723 aa25.68■■□□□ 1.7
TMEM88B-201ENST00000378821 MSH5O43196 834 aa25.67■■□□□ 1.7
TMEM88B-201ENST00000378821 SSFA2P28290 1259 aa25.66■■□□□ 1.7
TMEM88B-201ENST00000378821 SCN11AQ9UI33 1791 aa25.65■■□□□ 1.7
TMEM88B-201ENST00000378821 ATP6V1AP38606 617 aa25.65■■□□□ 1.7
TMEM88B-201ENST00000378821 CC2D1BQ5T0F9 858 aaKnown RBP25.65■■□□□ 1.7
TMEM88B-201ENST00000378821 SLC4A9Q96Q91 983 aa25.65■■□□□ 1.7
TMEM88B-201ENST00000378821 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.64■■□□□ 1.7
TMEM88B-201ENST00000378821 C1orf141Q5JVX7 400 aa25.64■■□□□ 1.7
TMEM88B-201ENST00000378821 CHD4Q14839 1912 aa25.64■■□□□ 1.69
TMEM88B-201ENST00000378821 COL5A3P25940 1745 aaPredicted RBP25.63■■□□□ 1.69
TMEM88B-201ENST00000378821 CABP4P57796 275 aa25.62■■□□□ 1.69
TMEM88B-201ENST00000378821 MSL1Q68DK7 614 aa25.62■■□□□ 1.69
TMEM88B-201ENST00000378821 ZEB1P37275 1124 aaPredicted RBP25.61■■□□□ 1.69
TMEM88B-201ENST00000378821 NLGN2Q8NFZ4 835 aa25.61■■□□□ 1.69
TMEM88B-201ENST00000378821 COL3A1P02461 1466 aaPredicted RBP25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 CICQ96RK0 1608 aaPredicted RBP25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 UTRNP46939 3433 aa25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 DIAPH1O60610 1272 aaKnown RBP25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 AKAP4Q5JQC9 854 aa25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 RC3H1Q5TC82 1133 aaKnown RBP25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 SMIM5Q71RC9 77 aa25.6■■□□□ 1.69
TMEM88B-201ENST00000378821 NFATC2IPQ8NCF5 419 aa25.59■■□□□ 1.69
TMEM88B-201ENST00000378821 CD2APQ9Y5K6 639 aa25.59■■□□□ 1.69
TMEM88B-201ENST00000378821 ADAMTS7Q9UKP4 1686 aa25.58■■□□□ 1.69
TMEM88B-201ENST00000378821 GNPATO15228 680 aa25.58■■□□□ 1.69
TMEM88B-201ENST00000378821 PHF14O94880 888 aa25.57■■□□□ 1.68
TMEM88B-201ENST00000378821 CNTNAP4Q9C0A0 1308 aa25.57■■□□□ 1.68
TMEM88B-201ENST00000378821 MRC1P22897 1456 aa25.56■■□□□ 1.68
TMEM88B-201ENST00000378821 KLHL34Q8N239 644 aa25.56■■□□□ 1.68
TMEM88B-201ENST00000378821 RBM42Q9BTD8 480 aaKnown RBP25.56■■□□□ 1.68
TMEM88B-201ENST00000378821 VIRMAQ69YN4 1812 aaKnown RBP25.56■■□□□ 1.68
TMEM88B-201ENST00000378821 MYH14Q7Z406 1995 aaKnown RBP25.55■■□□□ 1.68
TMEM88B-201ENST00000378821 HMOX1P09601 288 aa25.55■■□□□ 1.68
TMEM88B-201ENST00000378821 GPR162Q16538 588 aa25.55■■□□□ 1.68
TMEM88B-201ENST00000378821 ADRA2BP18089 450 aa25.53■■□□□ 1.68
TMEM88B-201ENST00000378821 LGR6Q9HBX8 967 aa25.53■■□□□ 1.68
TMEM88B-201ENST00000378821 RTCBQ9Y3I0 505 aaKnown RBP25.53■■□□□ 1.68
TMEM88B-201ENST00000378821 TJP1Q07157 1748 aa25.52■■□□□ 1.68
TMEM88B-201ENST00000378821 MTHFSDQ2M296 383 aaKnown RBP25.52■■□□□ 1.68
TMEM88B-201ENST00000378821 SLC52A2Q9HAB3 445 aa25.52■■□□□ 1.68
TMEM88B-201ENST00000378821 RNMTO43148 476 aaKnown RBP25.51■■□□□ 1.67
TMEM88B-201ENST00000378821 RPS6KA4O75676 772 aa25.51■■□□□ 1.67
TMEM88B-201ENST00000378821 TRAPPC3LQ5T215 181 aa25.51■■□□□ 1.67
TMEM88B-201ENST00000378821 GOLGB1Q14789 3259 aaKnown RBP25.5■■□□□ 1.67
TMEM88B-201ENST00000378821 PTCD1O75127 700 aaKnown RBP25.49■■□□□ 1.67
TMEM88B-201ENST00000378821 YBX3P16989 372 aaKnown RBP eCLIP25.49■■□□□ 1.67
TMEM88B-201ENST00000378821 ZNF784Q8NCA9 323 aaPredicted RBP25.49■■□□□ 1.67
TMEM88B-201ENST00000378821 ARHGEF1Q92888 912 aaKnown RBP25.49■■□□□ 1.67
TMEM88B-201ENST00000378821 C4AP0C0L4 1744 aa25.47■■□□□ 1.67
TMEM88B-201ENST00000378821 KIF13BQ9NQT8 1826 aa25.47■■□□□ 1.67
TMEM88B-201ENST00000378821 GRIN3BO60391 1043 aa25.46■■□□□ 1.67
TMEM88B-201ENST00000378821 NLGN1Q8N2Q7 840 aa25.46■■□□□ 1.67
TMEM88B-201ENST00000378821 CRKLP46109 303 aaKnown RBP25.45■■□□□ 1.66
TMEM88B-201ENST00000378821 CNGB1Q14028 1251 aaPredicted RBP25.45■■□□□ 1.66
TMEM88B-201ENST00000378821 KCPQ6ZWJ8 1503 aa25.44■■□□□ 1.66
TMEM88B-201ENST00000378821 MMP10P09238 476 aa25.43■■□□□ 1.66
TMEM88B-201ENST00000378821 GYS1P13807 737 aa25.43■■□□□ 1.66
TMEM88B-201ENST00000378821 INTS5Q6P9B9 1019 aaKnown RBP25.43■■□□□ 1.66
TMEM88B-201ENST00000378821 UBR2Q8IWV8 1755 aa25.43■■□□□ 1.66
TMEM88B-201ENST00000378821 U2SURPO15042 1029 aaKnown RBP25.42■■□□□ 1.66
TMEM88B-201ENST00000378821 PELP1Q8IZL8 1130 aaKnown RBP25.42■■□□□ 1.66
TMEM88B-201ENST00000378821 PPP2R1AP30153 589 aa25.41■■□□□ 1.66
TMEM88B-201ENST00000378821 RFC4P35249 363 aa25.41■■□□□ 1.66
TMEM88B-201ENST00000378821 KIAA1551Q9HCM1 1747 aa25.4■■□□□ 1.66
TMEM88B-201ENST00000378821 VSIG10Q8N0Z9 540 aa25.4■■□□□ 1.66
TMEM88B-201ENST00000378821 GAS2L2Q8NHY3 880 aa25.4■■□□□ 1.66
TMEM88B-201ENST00000378821 CFAP53Q96M91 514 aa25.4■■□□□ 1.66
TMEM88B-201ENST00000378821 SIPA1L3O60292 1781 aaPredicted RBP25.4■■□□□ 1.66
TMEM88B-201ENST00000378821 SLC39A6Q13433 755 aa25.39■■□□□ 1.66
TMEM88B-201ENST00000378821 IL17REQ8NFR9 667 aa25.39■■□□□ 1.66
TMEM88B-201ENST00000378821 RSPH6AQ9H0K4 717 aa25.39■■□□□ 1.66
TMEM88B-201ENST00000378821 GNAT3A8MTJ3 354 aa25.38■■□□□ 1.65
TMEM88B-201ENST00000378821 CYP19A1P11511 503 aaPredicted RBP25.38■■□□□ 1.65
TMEM88B-201ENST00000378821 DNAJC10Q8IXB1 793 aa25.38■■□□□ 1.65
TMEM88B-201ENST00000378821 CCDC87Q9NVE4 849 aa25.37■■□□□ 1.65
TMEM88B-201ENST00000378821 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
TMEM88B-201ENST00000378821 USP42Q9H9J4 1324 aaKnown RBP25.37■■□□□ 1.65
TMEM88B-201ENST00000378821 CEMIPQ8WUJ3 1361 aa25.36■■□□□ 1.65
TMEM88B-201ENST00000378821 PHACTR3Q96KR7 559 aa25.36■■□□□ 1.65
TMEM88B-201ENST00000378821 TGFB2P61812 414 aa25.35■■□□□ 1.65
TMEM88B-201ENST00000378821 SOS1Q07889 1333 aaPredicted RBP25.35■■□□□ 1.65
TMEM88B-201ENST00000378821 PXDNLA1KZ92 1463 aa25.34■■□□□ 1.65
TMEM88B-201ENST00000378821 NUDCQ9Y266 331 aa25.34■■□□□ 1.65
TMEM88B-201ENST00000378821 PRKAR2BP31323 418 aa25.33■■□□□ 1.65
TMEM88B-201ENST00000378821 FCHSD2O94868 740 aa25.32■■□□□ 1.64
TMEM88B-201ENST00000378821 DDX10Q13206 875 aaKnown RBP25.32■■□□□ 1.64
TMEM88B-201ENST00000378821 SRP68Q9UHB9 627 aaKnown RBP25.32■■□□□ 1.64
TMEM88B-201ENST00000378821 FKBP8Q14318 412 aa25.31■■□□□ 1.64
TMEM88B-201ENST00000378821 PARP3Q9Y6F1 533 aa25.31■■□□□ 1.64
TMEM88B-201ENST00000378821 N4BP2Q86UW6 1770 aaPredicted RBP25.31■■□□□ 1.64
TMEM88B-201ENST00000378821 TM4SF1P30408 202 aa25.3■■□□□ 1.64
TMEM88B-201ENST00000378821 TEFQ10587 303 aa25.3■■□□□ 1.64
TMEM88B-201ENST00000378821 ZNF790Q6PG37 636 aa25.3■■□□□ 1.64
TMEM88B-201ENST00000378821 BRCA1P38398 1863 aaKnown RBP25.3■■□□□ 1.64
TMEM88B-201ENST00000378821 U2AF1L5P0DN76 240 aaPredicted RBP25.28■■□□□ 1.64
TMEM88B-201ENST00000378821 U2AF1Q01081 240 aaKnown RBP eCLIP25.28■■□□□ 1.64
TMEM88B-201ENST00000378821 TTC5Q8N0Z6 440 aa25.28■■□□□ 1.64
TMEM88B-201ENST00000378821 ZNF496Q96IT1 587 aaPredicted RBP25.28■■□□□ 1.64
TMEM88B-201ENST00000378821 NARFQ9UHQ1 456 aa25.28■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 1069 ms