RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CACNA2D4Q7Z3S7 1137 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 RAB34Q9BZG1 259 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS13A-204ENST00000376634 LRRC9Q6ZRR7 1453 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 BTBD11A6QL63 1104 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 DDX23Q9BUQ8 820 aaKnown RBP14.49□□□□□ -0.09
VPS13A-204ENST00000376634 FGD5Q6ZNL6 1462 aa14.49□□□□□ -0.09
VPS13A-204ENST00000376634 MPNDQ8N594 471 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 GOLGA4Q13439 2230 aaKnown RBP14.48□□□□□ -0.09
VPS13A-204ENST00000376634 SYNJ2O15056 1496 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 AKNAQ7Z591 1439 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 FAM69CQ0P6D2 419 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 UBA5Q9GZZ9 404 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 CHMP4BP1P59074 171 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 KIF18AQ8NI77 898 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 ALS2CR12Q96Q35 445 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 PLEKHH1Q9ULM0 1364 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 LARP1Q6PKG0 1096 aaKnown RBP14.48□□□□□ -0.09
VPS13A-204ENST00000376634 FILIP1Q7Z7B0 1213 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 HOMER2Q9NSB8 354 aa14.48□□□□□ -0.09
VPS13A-204ENST00000376634 SRGAP3O43295 1099 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 NUP88Q99567 741 aaPredicted RBP14.47□□□□□ -0.09
VPS13A-204ENST00000376634 ZNF652Q9Y2D9 606 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 PABPN1LA6NDY0 278 aaKnown RBP14.47□□□□□ -0.09
VPS13A-204ENST00000376634 EHMT1Q9H9B1 1298 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 TMEM266Q2M3C6 531 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 CUL5Q93034 780 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 CCDC175P0C221 793 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 CHD1LQ86WJ1 897 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 ANKIB1Q9P2G1 1089 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 KIF14Q15058 1648 aa14.47□□□□□ -0.09
VPS13A-204ENST00000376634 CCDC196A0A1B0GTZ2 297 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 FERMT2Q96AC1 680 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 FERMT1Q9BQL6 677 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 FERP16591 822 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 KLHL10Q6JEL2 608 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 NCOA2Q15596 1464 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 SREK1Q8WXA9 508 aaKnown RBP14.46□□□□□ -0.09
VPS13A-204ENST00000376634 CETN1Q12798 172 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 PTPN14Q15678 1187 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 CALCOCO1Q9P1Z2 691 aa14.46□□□□□ -0.09
VPS13A-204ENST00000376634 DDX54Q8TDD1 881 aaKnown RBP14.46□□□□□ -0.1
VPS13A-204ENST00000376634 IDH1O75874 414 aaKnown RBP14.46□□□□□ -0.1
VPS13A-204ENST00000376634 TMEM132EQ6IEE7 984 aa14.46□□□□□ -0.1
VPS13A-204ENST00000376634 SYCE3A1L190 88 aa14.46□□□□□ -0.1
VPS13A-204ENST00000376634 CAMK4Q16566 473 aa14.46□□□□□ -0.1
VPS13A-204ENST00000376634 BBXQ8WY36 941 aaPredicted RBP14.46□□□□□ -0.1
VPS13A-204ENST00000376634 ZNF428Q96B54 188 aa14.46□□□□□ -0.1
VPS13A-204ENST00000376634 CRACR2BQ8N4Y2 399 aaPredicted RBP14.45□□□□□ -0.1
VPS13A-204ENST00000376634 PLEKHH2Q8IVE3 1493 aa14.45□□□□□ -0.1
VPS13A-204ENST00000376634 TSR2Q969E8 191 aaKnown RBP14.45□□□□□ -0.1
VPS13A-204ENST00000376634 BCCIPQ9P287 314 aaKnown RBP eCLIP14.45□□□□□ -0.1
VPS13A-204ENST00000376634 CEP126Q9P2H0 1117 aa14.45□□□□□ -0.1
VPS13A-204ENST00000376634 EPRSP07814 1512 aaKnown RBP14.45□□□□□ -0.1
VPS13A-204ENST00000376634 EFCAB5A4FU69 1503 aa14.45□□□□□ -0.1
VPS13A-204ENST00000376634 CIZ1Q9ULV3 898 aaPredicted RBP14.45□□□□□ -0.1
VPS13A-204ENST00000376634 CCDC83Q8IWF9 413 aa14.45□□□□□ -0.1
VPS13A-204ENST00000376634 TSNARE1Q96NA8 513 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 PSMD1Q99460 953 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 A0A087WZG4 1122 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 ITSN2Q9NZM3 1697 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 C9orf84Q5VXU9 1444 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 EXOSC9Q06265 439 aaKnown RBP14.44□□□□□ -0.1
VPS13A-204ENST00000376634 RNF187Q5TA31 235 aaPredicted RBP14.44□□□□□ -0.1
VPS13A-204ENST00000376634 IKBKGQ9Y6K9 419 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 CCDC183Q5T5S1 534 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 SULT6B1Q6IMI4 303 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 OSCARQ8IYS5 282 aa14.44□□□□□ -0.1
VPS13A-204ENST00000376634 FSD2A1L4K1 749 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 USO1O60763 962 aaKnown RBP14.43□□□□□ -0.1
VPS13A-204ENST00000376634 TOP1P11387 765 aaKnown RBP14.43□□□□□ -0.1
VPS13A-204ENST00000376634 CC2D2AQ9P2K1 1620 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 PRAM1Q96QH2 718 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 POLR3DP05423 398 aaPredicted RBP14.43□□□□□ -0.1
VPS13A-204ENST00000376634 NAA15Q9BXJ9 866 aaKnown RBP14.43□□□□□ -0.1
VPS13A-204ENST00000376634 ZPR1O75312 459 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 BCAR3O75815 825 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 MVPQ14764 893 aaKnown RBP14.43□□□□□ -0.1
VPS13A-204ENST00000376634 SSX2IPQ9Y2D8 614 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 ATF7IPQ6VMQ6 1270 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 AKAP2Q9Y2D5 859 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 STARD3NLO95772 234 aa14.43□□□□□ -0.1
VPS13A-204ENST00000376634 PPP2R1AP30153 589 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 DZIP1Q86YF9 867 aaKnown RBP14.42□□□□□ -0.1
VPS13A-204ENST00000376634 CAVIN4Q5BKX8 364 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 CTR9Q6PD62 1173 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 CCDC96Q2M329 555 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 SPECC1LQ69YQ0 1117 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 PROSER2Q86WR7 435 aaPredicted RBP14.42□□□□□ -0.1
VPS13A-204ENST00000376634 ERBINQ96RT1 1412 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 POTEB2H3BUK9 544 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 MRPS9P82933 396 aaKnown RBP14.42□□□□□ -0.1
VPS13A-204ENST00000376634 METTL24Q5JXM2 366 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 CGNQ9P2M7 1197 aaKnown RBP14.42□□□□□ -0.1
VPS13A-204ENST00000376634 ANO10Q9NW15 660 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 ABCF2Q9UG63 623 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 TTC21AQ8NDW8 1320 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 GPATCH11Q8N954 259 aa14.42□□□□□ -0.1
VPS13A-204ENST00000376634 MKNK2Q9HBH9 465 aa14.41□□□□□ -0.1
VPS13A-204ENST00000376634 DNA2P51530 1060 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms