RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MCCP23508 829 aa25.73■■□□□ 1.71
UPF3A-202ENST00000375299 ESYT1Q9BSJ8 1104 aa25.73■■□□□ 1.71
UPF3A-202ENST00000375299 FAM13BQ9NYF5 915 aa25.73■■□□□ 1.71
UPF3A-202ENST00000375299 EIF4A2Q14240 407 aaKnown RBP25.72■■□□□ 1.71
UPF3A-202ENST00000375299 RNF214Q8ND24 703 aa25.72■■□□□ 1.71
UPF3A-202ENST00000375299 INTS4Q96HW7 963 aaKnown RBP25.72■■□□□ 1.71
UPF3A-202ENST00000375299 SLC4A2P04920 1241 aa25.71■■□□□ 1.71
UPF3A-202ENST00000375299 TSPY26PQ9H489 355 aa25.71■■□□□ 1.71
UPF3A-202ENST00000375299 SALL3Q9BXA9 1300 aa25.71■■□□□ 1.71
UPF3A-202ENST00000375299 HDGFP51858 240 aaKnown RBP25.7■■□□□ 1.71
UPF3A-202ENST00000375299 SYAP1Q96A49 352 aaPredicted RBP25.7■■□□□ 1.71
UPF3A-202ENST00000375299 ESF1Q9H501 851 aaKnown RBP25.7■■□□□ 1.71
UPF3A-202ENST00000375299 ANAPC15P60006 121 aa25.7■■□□□ 1.7
UPF3A-202ENST00000375299 PRR36Q9H6K5 1346 aa25.69■■□□□ 1.7
UPF3A-202ENST00000375299 CCT4P50991 539 aaKnown RBP25.69■■□□□ 1.7
UPF3A-202ENST00000375299 CRB1P82279 1406 aa25.69■■□□□ 1.7
UPF3A-202ENST00000375299 DYNC1I1O14576 645 aa25.69■■□□□ 1.7
UPF3A-202ENST00000375299 SASS6Q6UVJ0 657 aa25.69■■□□□ 1.7
UPF3A-202ENST00000375299 PALD1Q9ULE6 856 aa25.69■■□□□ 1.7
UPF3A-202ENST00000375299 SSH2Q76I76 1423 aa25.68■■□□□ 1.7
UPF3A-202ENST00000375299 SLC4A10Q6U841 1118 aa25.67■■□□□ 1.7
UPF3A-202ENST00000375299 EXOC6BQ9Y2D4 811 aa25.67■■□□□ 1.7
UPF3A-202ENST00000375299 RGPD1P0DJD0 1748 aa25.66■■□□□ 1.7
UPF3A-202ENST00000375299 TSHZ3Q63HK5 1081 aa25.66■■□□□ 1.7
UPF3A-202ENST00000375299 GNAI2P04899 355 aa25.66■■□□□ 1.7
UPF3A-202ENST00000375299 G2E3Q7L622 706 aa25.66■■□□□ 1.7
UPF3A-202ENST00000375299 TNRQ92752 1358 aa25.65■■□□□ 1.7
UPF3A-202ENST00000375299 F6X3S4 739 aa25.65■■□□□ 1.7
UPF3A-202ENST00000375299 ROBO2Q9HCK4 1378 aa25.65■■□□□ 1.7
UPF3A-202ENST00000375299 PTMAP06454 111 aaKnown RBP25.64■■□□□ 1.7
UPF3A-202ENST00000375299 MX1P20591 662 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 IL17RAQ96F46 866 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 LRRCC1Q9C099 1032 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 ANO2Q9NQ90 1003 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 PHF14O94880 888 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 CHMLP26374 656 aa25.64■■□□□ 1.7
UPF3A-202ENST00000375299 NOL8Q76FK4 1167 aaKnown RBP25.64■■□□□ 1.7
UPF3A-202ENST00000375299 MTERF4Q7Z6M4 381 aaKnown RBP25.64■■□□□ 1.7
UPF3A-202ENST00000375299 TMEM2Q9UHN6 1383 aa25.64■■□□□ 1.69
UPF3A-202ENST00000375299 KIAA2012Q0VF49 1180 aa25.63■■□□□ 1.69
UPF3A-202ENST00000375299 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.62■■□□□ 1.69
UPF3A-202ENST00000375299 UBR1Q8IWV7 1749 aa25.62■■□□□ 1.69
UPF3A-202ENST00000375299 PEAK1Q9H792 1746 aa25.61■■□□□ 1.69
UPF3A-202ENST00000375299 RILPL2Q969X0 211 aa25.61■■□□□ 1.69
UPF3A-202ENST00000375299 TRIM6-TRIM34B2RNG4 842 aa25.6■■□□□ 1.69
UPF3A-202ENST00000375299 GADD45BO75293 160 aaPredicted RBP25.6■■□□□ 1.69
UPF3A-202ENST00000375299 ADAMTS13Q76LX8 1427 aa25.6■■□□□ 1.69
UPF3A-202ENST00000375299 ARHGEF10O15013 1369 aa25.6■■□□□ 1.69
UPF3A-202ENST00000375299 TTC21BQ7Z4L5 1316 aa25.6■■□□□ 1.69
UPF3A-202ENST00000375299 WDR33Q9C0J8 1336 aaKnown RBP25.6■■□□□ 1.69
UPF3A-202ENST00000375299 MIS18AQ9NYP9 233 aa25.6■■□□□ 1.69
UPF3A-202ENST00000375299 UVSSAQ2YD98 709 aa25.59■■□□□ 1.69
UPF3A-202ENST00000375299 USP48Q86UV5 1035 aa25.59■■□□□ 1.69
UPF3A-202ENST00000375299 FAM184AQ8NB25 1140 aa25.59■■□□□ 1.69
UPF3A-202ENST00000375299 STAP2Q9UGK3 403 aa25.59■■□□□ 1.69
UPF3A-202ENST00000375299 TSPYL4Q9UJ04 414 aa25.59■■□□□ 1.69
UPF3A-202ENST00000375299 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.59■■□□□ 1.69
UPF3A-202ENST00000375299 TCHHQ07283 1943 aa25.58■■□□□ 1.69
UPF3A-202ENST00000375299 GDPD2Q9HCC8 539 aa25.58■■□□□ 1.69
UPF3A-202ENST00000375299 OVOS2A0A0J9YW53 1432 aa25.58■■□□□ 1.69
UPF3A-202ENST00000375299 OVOS2Q6IE36 1432 aa25.58■■□□□ 1.69
UPF3A-202ENST00000375299 UPF3BQ9BZI7 483 aaKnown RBP25.58■■□□□ 1.68
UPF3A-202ENST00000375299 SRCIN1Q9C0H9 1055 aa25.58■■□□□ 1.68
UPF3A-202ENST00000375299 NALCNQ8IZF0 1738 aa25.57■■□□□ 1.68
UPF3A-202ENST00000375299 XRN1Q8IZH2 1706 aaKnown RBP25.57■■□□□ 1.68
UPF3A-202ENST00000375299 TOPAZ1Q8N9V7 1692 aa25.57■■□□□ 1.68
UPF3A-202ENST00000375299 KIF13AQ9H1H9 1805 aa25.57■■□□□ 1.68
UPF3A-202ENST00000375299 ACEP12821 1306 aa25.57■■□□□ 1.68
UPF3A-202ENST00000375299 GNAI3P08754 354 aa25.56■■□□□ 1.68
UPF3A-202ENST00000375299 ATP8B2P98198 1209 aa25.56■■□□□ 1.68
UPF3A-202ENST00000375299 FOXD4L6Q3SYB3 417 aaPredicted RBP25.56■■□□□ 1.68
UPF3A-202ENST00000375299 FOXD4L3Q6VB84 417 aaPredicted RBP25.56■■□□□ 1.68
UPF3A-202ENST00000375299 PNMA6EA0A0J9YXQ4 647 aa25.56■■□□□ 1.68
UPF3A-202ENST00000375299 EPB41L2O43491 1005 aaKnown RBP25.56■■□□□ 1.68
UPF3A-202ENST00000375299 TMEM87AQ8NBN3 555 aa25.56■■□□□ 1.68
UPF3A-202ENST00000375299 HSP90AB2PQ58FF8 381 aa25.55■■□□□ 1.68
UPF3A-202ENST00000375299 FAM208AQ9UK61 1670 aaKnown RBP25.55■■□□□ 1.68
UPF3A-202ENST00000375299 PLEKHG3A1L390 1219 aa25.54■■□□□ 1.68
UPF3A-202ENST00000375299 RIMS1Q86UR5 1692 aaKnown RBP25.54■■□□□ 1.68
UPF3A-202ENST00000375299 AOX1Q06278 1338 aa25.54■■□□□ 1.68
UPF3A-202ENST00000375299 PLEKHG5O94827 1062 aa25.54■■□□□ 1.68
UPF3A-202ENST00000375299 UNC5CLQ8IV45 518 aa25.54■■□□□ 1.68
UPF3A-202ENST00000375299 STK31Q9BXU1 1019 aa25.54■■□□□ 1.68
UPF3A-202ENST00000375299 RPAP1Q9BWH6 1393 aaPredicted RBP25.54■■□□□ 1.68
UPF3A-202ENST00000375299 N4BP2Q86UW6 1770 aaPredicted RBP25.54■■□□□ 1.68
UPF3A-202ENST00000375299 RTF1Q92541 710 aaKnown RBP25.53■■□□□ 1.68
UPF3A-202ENST00000375299 HSPA4P34932 840 aa25.53■■□□□ 1.68
UPF3A-202ENST00000375299 CCDC183Q5T5S1 534 aa25.53■■□□□ 1.68
UPF3A-202ENST00000375299 USP6P35125 1406 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 FOXO3O43524 673 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 MYRIPQ8NFW9 859 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 FMN2Q9NZ56 1722 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 NUTM2FA1L443 756 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 PIBF1Q8WXW3 757 aa25.52■■□□□ 1.68
UPF3A-202ENST00000375299 PLEKHG1Q9ULL1 1385 aa25.51■■□□□ 1.67
UPF3A-202ENST00000375299 MTHFSDQ2M296 383 aaKnown RBP25.51■■□□□ 1.67
UPF3A-202ENST00000375299 LTKP29376 864 aa25.51■■□□□ 1.67
UPF3A-202ENST00000375299 FLIIQ13045 1269 aa25.51■■□□□ 1.67
UPF3A-202ENST00000375299 USP25Q9UHP3 1055 aa25.51■■□□□ 1.67
UPF3A-202ENST00000375299 MAP3K19Q56UN5 1328 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms