RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 A0A1W2PRG0 241 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 TUBB4BP68371 445 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 GRIPAP1Q4V328 841 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 OPA1O60313 960 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC114Q96M63 670 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 JADE2Q9NQC1 790 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 LARP1Q6PKG0 1096 aaKnown RBP17.69■□□□□ 0.42
COL5A1-201ENST00000371817 STIM2Q9P246 746 aa17.69■□□□□ 0.42
COL5A1-201ENST00000371817 MPHOSPH10O00566 681 aaKnown RBP17.69■□□□□ 0.42
COL5A1-201ENST00000371817 HMGB1P09429 215 aaKnown RBP17.69■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC150Q8NCX0 1101 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 CAVIN2O95810 425 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 CKAP4Q07065 602 aaKnown RBP17.68■□□□□ 0.42
COL5A1-201ENST00000371817 DDX12PQ92771 950 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 YEATS4O95619 227 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 MXRA7P84157 204 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC57Q2TAC2 916 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 FGFR1OPO95684 399 aaKnown RBP17.68■□□□□ 0.42
COL5A1-201ENST00000371817 PDRG1Q9NUG6 133 aa17.68■□□□□ 0.42
COL5A1-201ENST00000371817 CTNNBL1Q8WYA6 563 aaPredicted RBP17.68■□□□□ 0.42
COL5A1-201ENST00000371817 RIC3Q7Z5B4 369 aa17.67■□□□□ 0.42
COL5A1-201ENST00000371817 GNAI2P04899 355 aa17.67■□□□□ 0.42
COL5A1-201ENST00000371817 TRAK1Q9UPV9 953 aa17.67■□□□□ 0.42
COL5A1-201ENST00000371817 TMX1Q9H3N1 280 aa17.67■□□□□ 0.42
COL5A1-201ENST00000371817 SREK1Q8WXA9 508 aaKnown RBP17.67■□□□□ 0.42
COL5A1-201ENST00000371817 DNA2P51530 1060 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 STX1AQ16623 288 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 STMN4Q9H169 189 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 OGFRQ9NZT2 677 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 FEZ2Q9UHY8 353 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 PPP1R14CQ8TAE6 165 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC12Q8WUD4 166 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 IKBKGQ9Y6K9 419 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 KRT32Q14532 448 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 CHD1LQ86WJ1 897 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 CWC25Q9NXE8 425 aaPredicted RBP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 LUC7L2Q9Y383 392 aaKnown RBP17.66■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC7Q96M83 1385 aa17.66■□□□□ 0.42
COL5A1-201ENST00000371817 TMC6Q7Z403 805 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 CEP120Q8N960 986 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.65■□□□□ 0.42
COL5A1-201ENST00000371817 KLHL10Q6JEL2 608 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 SMC6Q96SB8 1091 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 UVSSAQ2YD98 709 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 TRIM21P19474 475 aaKnown RBP17.65■□□□□ 0.42
COL5A1-201ENST00000371817 GNG11P61952 73 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 MLECQ14165 292 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 WASF1Q92558 559 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 TTC14Q96N46 770 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 B4GALNT4Q76KP1 1039 aa17.65■□□□□ 0.42
COL5A1-201ENST00000371817 KRBA2Q6ZNG9 492 aa17.64■□□□□ 0.42
COL5A1-201ENST00000371817 CCDC50Q8IVM0 306 aa17.64■□□□□ 0.42
COL5A1-201ENST00000371817 ATP11AP98196 1134 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 SH2D4BQ5SQS7 431 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 VGLL3A8MV65 326 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 NBPF11Q86T75 865 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 VPS18Q9P253 973 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 NOLC1Q14978 699 aaKnown RBP eCLIP17.64■□□□□ 0.41
COL5A1-201ENST00000371817 CASTP20810 708 aaKnown RBP17.64■□□□□ 0.41
COL5A1-201ENST00000371817 TACC1O75410 805 aa17.64■□□□□ 0.41
COL5A1-201ENST00000371817 CLNS1AP54105 237 aaKnown RBP17.64■□□□□ 0.41
COL5A1-201ENST00000371817 LACTBP83111 547 aaPredicted RBP17.64■□□□□ 0.41
COL5A1-201ENST00000371817 SMG6Q86US8 1419 aaKnown RBP17.63■□□□□ 0.41
COL5A1-201ENST00000371817 ZSWIM4Q9H7M6 989 aa17.63■□□□□ 0.41
COL5A1-201ENST00000371817 GBP7Q8N8V2 638 aaPredicted RBP17.63■□□□□ 0.41
COL5A1-201ENST00000371817 DZIP1Q86YF9 867 aaKnown RBP17.62■□□□□ 0.41
COL5A1-201ENST00000371817 JAKMIP1Q96N16 626 aaKnown RBP17.62■□□□□ 0.41
COL5A1-201ENST00000371817 TNPO1Q92973 898 aaKnown RBP17.62■□□□□ 0.41
COL5A1-201ENST00000371817 MACROD2A1Z1Q3 448 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 LMNTD2Q8IXW0 634 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 MRVI1Q9Y6F6 885 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 PIP4K2BP78356 416 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 C1orf115Q9H7X2 142 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 LRCH2Q5VUJ6 765 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 WDR63Q8IWG1 891 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 TSG101Q99816 390 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 ZBTB16Q05516 673 aa17.62■□□□□ 0.41
COL5A1-201ENST00000371817 CARMIL1Q5VZK9 1371 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 ANAPC4Q9UJX5 808 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 ZNF853P0CG23 659 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 FMNL3Q8IVF7 1028 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 DRC1Q96MC2 740 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 CTAGE9A4FU28 777 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 SSBP05455 408 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL5A1-201ENST00000371817 GOLGA1Q92805 767 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 CTNNA2P26232 953 aa17.61■□□□□ 0.41
COL5A1-201ENST00000371817 GOLIM4O00461 696 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 CPLX4Q7Z7G2 160 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 CCDC30Q5VVM6 783 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 PCK1P35558 622 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 DDX19AQ9NUU7 478 aaKnown RBP17.6■□□□□ 0.41
COL5A1-201ENST00000371817 SOGA1O94964 1423 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 TDRD12Q587J7 1177 aaKnown RBP17.6■□□□□ 0.41
COL5A1-201ENST00000371817 CFAP58Q5T655 872 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 BUB1BO60566 1050 aaPredicted RBP17.6■□□□□ 0.41
COL5A1-201ENST00000371817 SEPT14Q6ZU15 432 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 NACAP1Q9BZK3 213 aa17.6■□□□□ 0.41
COL5A1-201ENST00000371817 MATR3P43243 847 aaKnown RBP eCLIP17.59■□□□□ 0.41
COL5A1-201ENST00000371817 TUBB4AP04350 444 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms