RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 GAS2L2Q8NHY3 880 aa9.6□□□□□ -0.87
RNU4-39P-201ENST00000362455 PURBQ96QR8 312 aaKnown RBP9.6□□□□□ -0.87
RNU4-39P-201ENST00000362455 MKNK1Q9BUB5 465 aa9.6□□□□□ -0.87
RNU4-39P-201ENST00000362455 PKD2L1Q9P0L9 805 aa9.6□□□□□ -0.87
RNU4-39P-201ENST00000362455 GNRH1P01148 92 aa9.59□□□□□ -0.87
RNU4-39P-201ENST00000362455 FOXD4L5Q5VV16 416 aaPredicted RBP9.59□□□□□ -0.87
RNU4-39P-201ENST00000362455 FOXD4L4Q8WXT5 416 aaPredicted RBP9.59□□□□□ -0.87
RNU4-39P-201ENST00000362455 WASF2Q9Y6W5 498 aa9.59□□□□□ -0.87
RNU4-39P-201ENST00000362455 IGFBP4P22692 258 aa9.58□□□□□ -0.88
RNU4-39P-201ENST00000362455 EPHA4P54764 986 aa9.58□□□□□ -0.88
RNU4-39P-201ENST00000362455 RAB6BQ9NRW1 208 aa9.58□□□□□ -0.88
RNU4-39P-201ENST00000362455 ABL1P00519 1130 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 ESCO1Q5FWF5 840 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 CAPN12Q6ZSI9 719 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 SCG3Q8WXD2 468 aaKnown RBP9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 SLC4A9Q96Q91 983 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 ARHGEF10LQ9HCE6 1279 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 SEPT3Q9UH03 358 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 CECR2Q9BXF3 1484 aa9.57□□□□□ -0.88
RNU4-39P-201ENST00000362455 RANGAP1P46060 587 aaPredicted RBP9.56□□□□□ -0.88
RNU4-39P-201ENST00000362455 ZNF211Q13398 564 aaPredicted RBP9.56□□□□□ -0.88
RNU4-39P-201ENST00000362455 SNIP1Q8TAD8 396 aaKnown RBP9.56□□□□□ -0.88
RNU4-39P-201ENST00000362455 TSPAN10Q9H1Z9 355 aaPredicted RBP9.56□□□□□ -0.88
RNU4-39P-201ENST00000362455 EGFL7Q9UHF1 273 aa9.56□□□□□ -0.88
RNU4-39P-201ENST00000362455 FOXO3O43524 673 aa9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 C21orf2O43822 256 aa9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 ADH1AP07327 375 aa9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 GTF3C2Q8WUA4 911 aaPredicted RBP9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 ANO2Q9NQ90 1003 aa9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 BIN2Q9UBW5 565 aaPredicted RBP9.55□□□□□ -0.88
RNU4-39P-201ENST00000362455 ZCCHC6Q5VYS8 1495 aaKnown RBP9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 ATAD2Q6PL18 1390 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 GDF9O60383 454 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 PTCD1O75127 700 aaKnown RBP9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 IL2RAP01589 272 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 CBLBQ13191 982 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 CYP4X1Q8N118 509 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 XAGE2Q96GT9 111 aa9.54□□□□□ -0.88
RNU4-39P-201ENST00000362455 TTC24A2A3L6 582 aaPredicted RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 A6NJY4 79 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 H3BRB1 525 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 J3QL48 77 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 SMTNP53814 917 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 FOXK2Q01167 660 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 TBCELQ5QJ74 424 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 KDF1Q8NAX2 398 aaPredicted RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 CHMP7Q8WUX9 453 aaPredicted RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 COL26A1Q96A83 441 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 ITPKCQ96DU7 683 aa9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 TUT1Q9H6E5 874 aaKnown RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 SCHIP1Q9P0W5 487 aaPredicted RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 DNMT3AQ9Y6K1 912 aaPredicted RBP9.53□□□□□ -0.88
RNU4-39P-201ENST00000362455 TNFRSF10AO00220 468 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 ICMTO60725 284 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 ZIC2O95409 532 aaPredicted RBP9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 PRR20EP86478 221 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 PRR20CP86479 221 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 PRR20DP86480 221 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 PRR20BP86481 221 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 PRR20AP86496 221 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 MTFR1Q15390 333 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 Q6ZVU0 165 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 SLC9A9Q8IVB4 645 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 CNKSR1Q969H4 720 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 KLF16Q9BXK1 252 aaPredicted RBP9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 CC2D2AQ9P2K1 1620 aa9.52□□□□□ -0.89
RNU4-39P-201ENST00000362455 A0A1W2PRU2 124 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 PPP1R12BO60237 982 aaPredicted RBP9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 WDR4P57081 412 aaKnown RBP9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 NAA30Q147X3 362 aaPredicted RBP9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 TLR1Q15399 786 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 GLYCTKQ8IVS8 523 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 ESYT1Q9BSJ8 1104 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 ZFAND3Q9H8U3 227 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 DCAF1Q9Y4B6 1507 aa9.51□□□□□ -0.89
RNU4-39P-201ENST00000362455 CLN3Q13286 438 aa9.5□□□□□ -0.89
RNU4-39P-201ENST00000362455 MTMR3Q13615 1198 aa9.5□□□□□ -0.89
RNU4-39P-201ENST00000362455 VTI1AQ96AJ9 217 aa9.5□□□□□ -0.89
RNU4-39P-201ENST00000362455 AGBL1Q96MI9 1066 aa9.5□□□□□ -0.89
RNU4-39P-201ENST00000362455 HRH3Q9Y5N1 445 aa9.5□□□□□ -0.89
RNU4-39P-201ENST00000362455 SHROOM4Q9ULL8 1493 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 TIMP2P16035 220 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 PTGIRP43119 386 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 MARSP56192 900 aaKnown RBP9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 TRIM67Q6ZTA4 783 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 ZNF428Q96B54 188 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 TOR4AQ9NXH8 423 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 USP3Q9Y6I4 520 aa9.49□□□□□ -0.89
RNU4-39P-201ENST00000362455 CDK2AP1O14519 115 aa9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 FKBP4Q02790 459 aaKnown RBP eCLIP9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 SF3B2Q13435 895 aaKnown RBP9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 DNAJC14Q6Y2X3 702 aaPredicted RBP9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 STAG2Q8N3U4 1231 aa9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 HELQQ8TDG4 1101 aa9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 C2orf49Q9BVC5 232 aaPredicted RBP9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 IQSEC3Q9UPP2 1182 aaPredicted RBP9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 PDZRN3Q9UPQ7 1066 aa9.48□□□□□ -0.89
RNU4-39P-201ENST00000362455 MEN1O00255 615 aa9.47□□□□□ -0.89
RNU4-39P-201ENST00000362455 SMPD1P17405 629 aa9.47□□□□□ -0.89
RNU4-39P-201ENST00000362455 RBM25P49756 843 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms