RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 NFE2L2Q16236 605 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 EPRSP07814 1512 aaKnown RBP12.84□□□□□ -0.35
CLIP1-203ENST00000361654 KIF20AO95235 890 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 BAG3O95817 575 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 KRT28Q7Z3Y7 464 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 TSR2Q969E8 191 aaKnown RBP12.84□□□□□ -0.35
CLIP1-203ENST00000361654 CFAP45Q9UL16 551 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 FIBPO43427 364 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 SSR1P43307 286 aaKnown RBP12.84□□□□□ -0.35
CLIP1-203ENST00000361654 ZNF771Q7L3S4 317 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC39Q9UFE4 941 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 TAF7Q15545 349 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-203ENST00000361654 TMEM266Q2M3C6 531 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 LARP1BQ659C4 914 aaKnown RBP12.83□□□□□ -0.36
CLIP1-203ENST00000361654 JAKMIP3Q5VZ66 844 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 LRRC9Q6ZRR7 1453 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 PIBF1Q8WXW3 757 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 MSH6P52701 1360 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 WDR33Q9C0J8 1336 aaKnown RBP12.83□□□□□ -0.36
CLIP1-203ENST00000361654 TRAF1Q13077 416 aa12.83□□□□□ -0.36
CLIP1-203ENST00000361654 PHAXQ9H814 394 aaKnown RBP12.83□□□□□ -0.36
CLIP1-203ENST00000361654 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-203ENST00000361654 MYD88Q99836 296 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 GBP2P32456 591 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-203ENST00000361654 KIF21BO75037 1637 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 BAG4O95429 457 aaKnown RBP12.82□□□□□ -0.36
CLIP1-203ENST00000361654 PDRG1Q9NUG6 133 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 ANAPC15P60006 121 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 NBPF1Q3BBV0 1214 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 KIF1BPQ96EK5 621 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 TSG101Q99816 390 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 KIAA1107Q9UPP5 1409 aa12.82□□□□□ -0.36
CLIP1-203ENST00000361654 RAB11FIP3O75154 756 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 AKNAQ7Z591 1439 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 PPP4R3BQ5MIZ7 849 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 IFNL2Q8IZJ0 200 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 HYPKQ9NX55 129 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 PDZRN3Q9UPQ7 1066 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 EPB41L2O43491 1005 aaKnown RBP12.81□□□□□ -0.36
CLIP1-203ENST00000361654 SKIDA1Q1XH10 827 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 FAM43AQ8N2R8 423 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 CCDC12Q8WUD4 166 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-203ENST00000361654 SMARCC1Q92922 1105 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-203ENST00000361654 TAF4BQ92750 862 aa12.81□□□□□ -0.36
CLIP1-203ENST00000361654 CCDC192P0DO97 292 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 IQCEQ6IPM2 695 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 OGFOD1Q8N543 542 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 CCDC112Q8NEF3 446 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 EIF5P55010 431 aaKnown RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 MAP7D2Q96T17 732 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 TSPY26PQ9H489 355 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 SNAPC4Q5SXM2 1469 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 MAP4K4O95819 1239 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 TNMDQ9H2S6 317 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 B4DLN1 442 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 RANBP6O60518 1105 aaKnown RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 GLRX3O76003 335 aaKnown RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 MRPL12P52815 198 aaKnown RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 GSTO1P78417 241 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 GRM1Q13255 1194 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 DUSP27Q5VZP5 1158 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 JAKMIP1Q96N16 626 aaKnown RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 ZNF397Q8NF99 534 aaPredicted RBP12.8□□□□□ -0.36
CLIP1-203ENST00000361654 VTI1AQ96AJ9 217 aa12.8□□□□□ -0.36
CLIP1-203ENST00000361654 FGFR1OPO95684 399 aaKnown RBP12.79□□□□□ -0.36
CLIP1-203ENST00000361654 NBPF6Q5VWK0 638 aa12.79□□□□□ -0.36
CLIP1-203ENST00000361654 VPS36Q86VN1 386 aa12.79□□□□□ -0.36
CLIP1-203ENST00000361654 NBPF5PQ86XG9 351 aaPredicted RBP12.79□□□□□ -0.36
CLIP1-203ENST00000361654 NBPF4Q96M43 638 aa12.79□□□□□ -0.36
CLIP1-203ENST00000361654 BCAR3O75815 825 aa12.79□□□□□ -0.36
CLIP1-203ENST00000361654 ENOX2Q16206 610 aaKnown RBP12.79□□□□□ -0.36
CLIP1-203ENST00000361654 CWC27Q6UX04 472 aaKnown RBP12.79□□□□□ -0.36
CLIP1-203ENST00000361654 TTC21AQ8NDW8 1320 aa12.79□□□□□ -0.36
CLIP1-203ENST00000361654 H0YHG0 523 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 CETN1Q12798 172 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 IL1RAPL2Q9NP60 686 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 TTF1Q15361 905 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-203ENST00000361654 AXDND1Q5T1B0 1012 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-203ENST00000361654 STXBP4Q6ZWJ1 553 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 UBE2Q2Q8WVN8 375 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 DBF4Q9UBU7 674 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-203ENST00000361654 CCDC194A0A1B0GVG4 234 aa12.78□□□□□ -0.36
CLIP1-203ENST00000361654 PDE4BQ07343 736 aa12.77□□□□□ -0.36
CLIP1-203ENST00000361654 RNF214Q8ND24 703 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 SPATA32Q96LK8 384 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 KIF5BP33176 963 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 MAP3K9P80192 1104 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 WAPLQ7Z5K2 1190 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 SMTNL1A8MU46 457 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 CATIPQ7Z7H3 387 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 JDP2Q8WYK2 163 aa12.77□□□□□ -0.37
CLIP1-203ENST00000361654 PRPF40AO75400 957 aaKnown RBP12.76□□□□□ -0.37
CLIP1-203ENST00000361654 HMGB1P09429 215 aaKnown RBP12.76□□□□□ -0.37
CLIP1-203ENST00000361654 CA8P35219 290 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 UBA5Q9GZZ9 404 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 NASPP49321 788 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-203ENST00000361654 FERMT2Q96AC1 680 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 GOLGA6L7A0A1B0GV03 622 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 PABPN1LA6NDY0 278 aaKnown RBP12.76□□□□□ -0.37
CLIP1-203ENST00000361654 GPTP24298 496 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms