RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 RAB3IL1Q8TBN0 382 aa10.77□□□□□ -0.68
VPS13A-203ENST00000360280 PUS7Q96PZ0 661 aaKnown RBP10.77□□□□□ -0.68
VPS13A-203ENST00000360280 IQCGQ9H095 443 aaKnown RBP10.77□□□□□ -0.68
VPS13A-203ENST00000360280 HSF2BPO75031 334 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 PDRG1Q9NUG6 133 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 MACROD2A1Z1Q3 448 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 YEATS4O95619 227 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 SEC63Q9UGP8 760 aaKnown RBP10.77□□□□□ -0.69
VPS13A-203ENST00000360280 CAVIN2O95810 425 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 NUP133Q8WUM0 1156 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 TOP2AP11388 1531 aaKnown RBP10.77□□□□□ -0.69
VPS13A-203ENST00000360280 KIF21BO75037 1637 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 CTAGE5O15320 804 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 CTNNBL1Q8WYA6 563 aaPredicted RBP10.77□□□□□ -0.69
VPS13A-203ENST00000360280 FHOD3Q2V2M9 1422 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 C16orf45Q96MC5 204 aaPredicted RBP10.77□□□□□ -0.69
VPS13A-203ENST00000360280 TTC14Q96N46 770 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 MAATS1Q7Z4T9 603 aa10.77□□□□□ -0.69
VPS13A-203ENST00000360280 IRX3P78415 501 aaPredicted RBP10.76□□□□□ -0.69
VPS13A-203ENST00000360280 PPP4R3BQ5MIZ7 849 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 TNNT1P13805 278 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 CETN1Q12798 172 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 JADE2Q9NQC1 790 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS13A-203ENST00000360280 IFI16Q16666 785 aaKnown RBP10.76□□□□□ -0.69
VPS13A-203ENST00000360280 SSX2IPQ9Y2D8 614 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 CCDC155Q8N6L0 562 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 MCM4P33991 863 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 CCDC88BA6NC98 1476 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 TMCO5BA8MYB1 307 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 PRIMPOLQ96LW4 560 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 NBPF1Q3BBV0 1214 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 HMOX1P09601 288 aa10.76□□□□□ -0.69
VPS13A-203ENST00000360280 A0A1W2PRG0 241 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 STAC3Q96MF2 364 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 SWAP70Q9UH65 585 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 TDRD12Q587J7 1177 aaKnown RBP10.75□□□□□ -0.69
VPS13A-203ENST00000360280 TDO2P48775 406 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 SETSIPP0DME0 302 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 CCDC171Q6TFL3 1326 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 CCDC196A0A1B0GTZ2 297 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 TUBB4BP68371 445 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 KRT222Q8N1A0 295 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 PDS5BQ9NTI5 1447 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 CASTP20810 708 aaKnown RBP10.75□□□□□ -0.69
VPS13A-203ENST00000360280 SNW1Q13573 536 aaKnown RBP10.75□□□□□ -0.69
VPS13A-203ENST00000360280 GAS2L2Q8NHY3 880 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 SMC6Q96SB8 1091 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 BACH2Q9BYV9 841 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 MPNDQ8N594 471 aa10.75□□□□□ -0.69
VPS13A-203ENST00000360280 KIF4AO95239 1232 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 MXRA7P84157 204 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 LRRC45Q96CN5 670 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 AKNAQ7Z591 1439 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 ZFYP08048 801 aaPredicted RBP10.74□□□□□ -0.69
VPS13A-203ENST00000360280 ARFGAP3Q9NP61 516 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 MKRN1Q9UHC7 482 aaKnown RBP10.74□□□□□ -0.69
VPS13A-203ENST00000360280 PDZRN3Q9UPQ7 1066 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 PPM1FP49593 454 aaPredicted RBP10.74□□□□□ -0.69
VPS13A-203ENST00000360280 ANAPC4Q9UJX5 808 aa10.74□□□□□ -0.69
VPS13A-203ENST00000360280 RSRC1Q96IZ7 334 aaKnown RBP10.74□□□□□ -0.69
VPS13A-203ENST00000360280 ZHX1Q9UKY1 873 aaPredicted RBP10.74□□□□□ -0.69
VPS13A-203ENST00000360280 CAMK4Q16566 473 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 CHD1LQ86WJ1 897 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 PYM1Q9BRP8 204 aaKnown RBP10.73□□□□□ -0.69
VPS13A-203ENST00000360280 TMEM266Q2M3C6 531 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 KIAA0753Q2KHM9 967 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 CFAP58Q5T655 872 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 MYOM3Q5VTT5 1437 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 HMGB1P1B2RPK0 211 aaPredicted RBP10.73□□□□□ -0.69
VPS13A-203ENST00000360280 RASAL2Q9UJF2 1139 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 CCDC172P0C7W6 258 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 PIBF1Q8WXW3 757 aa10.73□□□□□ -0.69
VPS13A-203ENST00000360280 DCAF8L1A6NGE4 600 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 ACTN2P35609 894 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 STX1AQ16623 288 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 AEBP2Q6ZN18 517 aaPredicted RBP10.72□□□□□ -0.69
VPS13A-203ENST00000360280 MAP7D1Q3KQU3 841 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 FERMT2Q96AC1 680 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 TTC12Q9H892 705 aaPredicted RBP10.72□□□□□ -0.69
VPS13A-203ENST00000360280 U3KPZ7 1027 aaPredicted RBP10.72□□□□□ -0.69
VPS13A-203ENST00000360280 JAKMIP1Q96N16 626 aaKnown RBP10.72□□□□□ -0.69
VPS13A-203ENST00000360280 GOLIM4O00461 696 aa10.72□□□□□ -0.69
VPS13A-203ENST00000360280 TWISTNBQ3B726 338 aaPredicted RBP10.72□□□□□ -0.69
VPS13A-203ENST00000360280 GTPBP4Q9BZE4 634 aaKnown RBP10.71□□□□□ -0.69
VPS13A-203ENST00000360280 MPHOSPH8Q99549 860 aa10.71□□□□□ -0.69
VPS13A-203ENST00000360280 HYPKQ9NX55 129 aa10.71□□□□□ -0.69
VPS13A-203ENST00000360280 KIF5BP33176 963 aa10.71□□□□□ -0.69
VPS13A-203ENST00000360280 FKBP4Q02790 459 aaKnown RBP eCLIP10.71□□□□□ -0.7
VPS13A-203ENST00000360280 TTC31Q49AM3 519 aaPredicted RBP10.71□□□□□ -0.7
VPS13A-203ENST00000360280 GPRASP1Q5JY77 1395 aa10.71□□□□□ -0.7
VPS13A-203ENST00000360280 KLHL10Q6JEL2 608 aa10.71□□□□□ -0.7
VPS13A-203ENST00000360280 SERPINA10Q9UK55 444 aa10.71□□□□□ -0.7
VPS13A-203ENST00000360280 UBE2Q2Q8WVN8 375 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 DDX19AQ9NUU7 478 aaKnown RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 CWC25Q9NXE8 425 aaPredicted RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 STIM2Q9P246 746 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 PRPF4BQ13523 1007 aaKnown RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 KLHL34Q8N239 644 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 HMGB1P09429 215 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms