RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 ARHGAP5Q13017 1502 aa17.32■□□□□ 0.36
LMX1B-201ENST00000355497 ZNF287Q9HBT7 754 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 RUSC2Q8N2Y8 1516 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 FGFR1OPO95684 399 aaKnown RBP17.31■□□□□ 0.36
LMX1B-201ENST00000355497 U3KPZ7 1027 aaPredicted RBP17.31■□□□□ 0.36
LMX1B-201ENST00000355497 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 PPP4R3AQ6IN85 833 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 TXNDC2Q86VQ3 553 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 CLIP2Q9UDT6 1046 aa17.31■□□□□ 0.36
LMX1B-201ENST00000355497 CBX1P83916 185 aa17.3■□□□□ 0.36
LMX1B-201ENST00000355497 ANKRD30BQ9BXX2 1392 aa17.3■□□□□ 0.36
LMX1B-201ENST00000355497 USO1O60763 962 aaKnown RBP17.3■□□□□ 0.36
LMX1B-201ENST00000355497 KLHL10Q6JEL2 608 aa17.3■□□□□ 0.36
LMX1B-201ENST00000355497 RNF187Q5TA31 235 aaPredicted RBP17.3■□□□□ 0.36
LMX1B-201ENST00000355497 SCAND2PQ9GZW5 306 aaPredicted RBP17.3■□□□□ 0.36
LMX1B-201ENST00000355497 FERMT3Q86UX7 667 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 BCCIPQ9P287 314 aaKnown RBP eCLIP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 IBSPP21815 317 aaPredicted RBP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 CABP1Q9NZU7 370 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 PLEKHH1Q9ULM0 1364 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 PAFAH1B1P43034 410 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 PRPF40BQ6NWY9 871 aaKnown RBP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 LARP1Q6PKG0 1096 aaKnown RBP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 CTNNBL1Q8WYA6 563 aaPredicted RBP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 FAM107BQ9H098 131 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 POTEB2H3BUK9 544 aa17.29■□□□□ 0.36
LMX1B-201ENST00000355497 NUP88Q99567 741 aaPredicted RBP17.29■□□□□ 0.36
LMX1B-201ENST00000355497 SF3B2Q13435 895 aaKnown RBP17.28■□□□□ 0.36
LMX1B-201ENST00000355497 RAB11FIP3O75154 756 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 YEATS4O95619 227 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 UBE4AQ14139 1066 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 HOOK3Q86VS8 718 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 OSCARQ8IYS5 282 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 AKAP2Q9Y2D5 859 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 AEBP2Q6ZN18 517 aaPredicted RBP17.28■□□□□ 0.36
LMX1B-201ENST00000355497 SLC12A5Q9H2X9 1139 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 TMOD2Q9NZR1 351 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 UBA5Q9GZZ9 404 aa17.28■□□□□ 0.36
LMX1B-201ENST00000355497 MX1P20591 662 aa17.27■□□□□ 0.36
LMX1B-201ENST00000355497 PPM1EQ8WY54 764 aa17.27■□□□□ 0.36
LMX1B-201ENST00000355497 LRRC9Q6ZRR7 1453 aa17.27■□□□□ 0.36
LMX1B-201ENST00000355497 SCLT1Q96NL6 688 aa17.27■□□□□ 0.36
LMX1B-201ENST00000355497 SH2B1Q9NRF2 756 aaPredicted RBP17.27■□□□□ 0.36
LMX1B-201ENST00000355497 CCDC196A0A1B0GTZ2 297 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 CTAGE5O15320 804 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 CCDC150Q8NCX0 1101 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 METTL24Q5JXM2 366 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 KIF1BPQ96EK5 621 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 CALCOCO1Q9P1Z2 691 aa17.27■□□□□ 0.35
LMX1B-201ENST00000355497 NCOA2Q15596 1464 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 TMEM266Q2M3C6 531 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 C8orf76Q96K31 380 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.26■□□□□ 0.35
LMX1B-201ENST00000355497 RAB34Q9BZG1 259 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 TAOK3Q9H2K8 898 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 PRDM10Q9NQV6 1147 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 POLR3DP05423 398 aaPredicted RBP17.26■□□□□ 0.35
LMX1B-201ENST00000355497 HFM1A2PYH4 1435 aa17.26■□□□□ 0.35
LMX1B-201ENST00000355497 GLRX3O76003 335 aaKnown RBP17.25■□□□□ 0.35
LMX1B-201ENST00000355497 KIF20AO95235 890 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 ALS2CR12Q96Q35 445 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 ABCF2Q9UG63 623 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 NEMFO60524 1076 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 DNA2P51530 1060 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 TMEM57Q8N5G2 664 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 RTEL1-TNFRSF6BF6WH68 1400 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 ERBINQ96RT1 1412 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 POLR3GO15318 223 aaPredicted RBP17.25■□□□□ 0.35
LMX1B-201ENST00000355497 CCDC175P0C221 793 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 GIGYF2Q6Y7W6 1299 aaKnown RBP17.25■□□□□ 0.35
LMX1B-201ENST00000355497 NAA15Q9BXJ9 866 aaKnown RBP17.25■□□□□ 0.35
LMX1B-201ENST00000355497 TDRD12Q587J7 1177 aaKnown RBP17.25■□□□□ 0.35
LMX1B-201ENST00000355497 TNNT1P13805 278 aa17.25■□□□□ 0.35
LMX1B-201ENST00000355497 GAPVD1Q14C86 1478 aa17.24■□□□□ 0.35
LMX1B-201ENST00000355497 HMGB1P09429 215 aaKnown RBP17.24■□□□□ 0.35
LMX1B-201ENST00000355497 MKNK2Q9HBH9 465 aa17.24■□□□□ 0.35
LMX1B-201ENST00000355497 NBPF1Q3BBV0 1214 aa17.24■□□□□ 0.35
LMX1B-201ENST00000355497 BICDL1Q6ZP65 573 aa17.24■□□□□ 0.35
LMX1B-201ENST00000355497 CCDC85AQ96PX6 553 aaPredicted RBP17.24■□□□□ 0.35
LMX1B-201ENST00000355497 EXOC6BQ9Y2D4 811 aa17.24■□□□□ 0.35
LMX1B-201ENST00000355497 MINDY4BA8MYZ0 360 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 FCHSD2O94868 740 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CTCFLQ8NI51 663 aaPredicted RBP17.23■□□□□ 0.35
LMX1B-201ENST00000355497 SMARCC1Q92922 1105 aaPredicted RBP17.23■□□□□ 0.35
LMX1B-201ENST00000355497 TMX1Q9H3N1 280 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CRACR2BQ8N4Y2 399 aaPredicted RBP17.23■□□□□ 0.35
LMX1B-201ENST00000355497 SSRP1Q08945 709 aaKnown RBP17.23■□□□□ 0.35
LMX1B-201ENST00000355497 MACROD2A1Z1Q3 448 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 GNAT3A8MTJ3 354 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CTNNA2P26232 953 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 GSDMDP57764 484 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 NFE2L2Q16236 605 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CAVIN4Q5BKX8 364 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CNNM3Q8NE01 707 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CPLX3Q8WVH0 158 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 CUL5Q93034 780 aa17.23■□□□□ 0.35
LMX1B-201ENST00000355497 SPECC1Q5M775 1068 aa17.22■□□□□ 0.35
LMX1B-201ENST00000355497 NAPBQ9H115 298 aa17.22■□□□□ 0.35
LMX1B-201ENST00000355497 ANKRD18BA2A2Z9 1011 aa17.22■□□□□ 0.35
LMX1B-201ENST00000355497 CTR9Q6PD62 1173 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms