RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 TWISTNBQ3B726 338 aaPredicted RBP18.93■□□□□ 0.62
CXCL12-201ENST00000343575 DDX54Q8TDD1 881 aaKnown RBP18.93■□□□□ 0.62
CXCL12-201ENST00000343575 SSH1Q8WYL5 1049 aa18.93■□□□□ 0.62
CXCL12-201ENST00000343575 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.93■□□□□ 0.62
CXCL12-201ENST00000343575 KDM3BQ7LBC6 1761 aa18.93■□□□□ 0.62
CXCL12-201ENST00000343575 MRC1P22897 1456 aa18.93■□□□□ 0.62
CXCL12-201ENST00000343575 BARGINQ6ZT62 677 aa18.92■□□□□ 0.62
CXCL12-201ENST00000343575 SLC52A2Q9HAB3 445 aa18.92■□□□□ 0.62
CXCL12-201ENST00000343575 USP21Q9UK80 565 aa18.92■□□□□ 0.62
CXCL12-201ENST00000343575 PPP4R2Q9NY27 417 aa18.92■□□□□ 0.62
CXCL12-201ENST00000343575 HSP90AB1P08238 724 aaKnown RBP18.91■□□□□ 0.62
CXCL12-201ENST00000343575 C20orf194Q5TEA3 1177 aa18.91■□□□□ 0.62
CXCL12-201ENST00000343575 NFATC2IPQ8NCF5 419 aa18.91■□□□□ 0.62
CXCL12-201ENST00000343575 BTBD11A6QL63 1104 aa18.9■□□□□ 0.62
CXCL12-201ENST00000343575 AFF2P51816 1311 aa18.9■□□□□ 0.62
CXCL12-201ENST00000343575 MSH5O43196 834 aa18.9■□□□□ 0.62
CXCL12-201ENST00000343575 MEX3CQ5U5Q3 659 aaKnown RBP18.9■□□□□ 0.62
CXCL12-201ENST00000343575 CDCA7Q9BWT1 371 aaPredicted RBP18.9■□□□□ 0.62
CXCL12-201ENST00000343575 CCDC9Q9Y3X0 531 aaKnown RBP18.9■□□□□ 0.62
CXCL12-201ENST00000343575 TNS2Q63HR2 1409 aa18.89■□□□□ 0.61
CXCL12-201ENST00000343575 EIF4A1P60842 406 aaKnown RBP18.89■□□□□ 0.61
CXCL12-201ENST00000343575 ZNF428Q96B54 188 aa18.89■□□□□ 0.61
CXCL12-201ENST00000343575 TOGARAM1Q9Y4F4 1720 aa18.89■□□□□ 0.61
CXCL12-201ENST00000343575 EXOC5O00471 708 aa18.88■□□□□ 0.61
CXCL12-201ENST00000343575 ALDH1L2Q3SY69 923 aa18.88■□□□□ 0.61
CXCL12-201ENST00000343575 HEG1Q9ULI3 1381 aa18.87■□□□□ 0.61
CXCL12-201ENST00000343575 BRPF1P55201 1214 aaPredicted RBP18.87■□□□□ 0.61
CXCL12-201ENST00000343575 SMC4Q9NTJ3 1288 aa18.87■□□□□ 0.61
CXCL12-201ENST00000343575 TCERG1O14776 1098 aaKnown RBP18.86■□□□□ 0.61
CXCL12-201ENST00000343575 SLC39A6Q13433 755 aa18.86■□□□□ 0.61
CXCL12-201ENST00000343575 FAM98CQ17RN3 349 aaKnown RBP18.86■□□□□ 0.61
CXCL12-201ENST00000343575 TNNQ9UQP3 1299 aa18.86■□□□□ 0.61
CXCL12-201ENST00000343575 GLI3P10071 1580 aa18.86■□□□□ 0.61
CXCL12-201ENST00000343575 ERVV-2B6SEH9 535 aa18.86■□□□□ 0.61
CXCL12-201ENST00000343575 MRPL50Q8N5N7 158 aaKnown RBP18.86■□□□□ 0.61
CXCL12-201ENST00000343575 CABP4P57796 275 aa18.85■□□□□ 0.61
CXCL12-201ENST00000343575 DDB1Q16531 1140 aa18.85■□□□□ 0.61
CXCL12-201ENST00000343575 ZNF790Q6PG37 636 aa18.85■□□□□ 0.61
CXCL12-201ENST00000343575 ATRNO75882 1429 aa18.85■□□□□ 0.61
CXCL12-201ENST00000343575 MARCH10Q8NA82 808 aaPredicted RBP18.84■□□□□ 0.61
CXCL12-201ENST00000343575 FRAT1Q92837 279 aaPredicted RBP18.84■□□□□ 0.61
CXCL12-201ENST00000343575 FBXO41Q8TF61 875 aa18.84■□□□□ 0.61
CXCL12-201ENST00000343575 GJD4Q96KN9 370 aaPredicted RBP18.83■□□□□ 0.6
CXCL12-201ENST00000343575 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.82■□□□□ 0.6
CXCL12-201ENST00000343575 NOB1Q9ULX3 412 aaKnown RBP18.82■□□□□ 0.6
CXCL12-201ENST00000343575 THSD7AQ9UPZ6 1657 aa18.82■□□□□ 0.6
CXCL12-201ENST00000343575 RLBP1P12271 317 aa18.82■□□□□ 0.6
CXCL12-201ENST00000343575 EXOC6Q8TAG9 804 aa18.82■□□□□ 0.6
CXCL12-201ENST00000343575 PRAMEF22A3QJZ6 481 aa18.81■□□□□ 0.6
CXCL12-201ENST00000343575 GIGYF1O75420 1035 aaPredicted RBP18.81■□□□□ 0.6
CXCL12-201ENST00000343575 SOS1Q07889 1333 aaPredicted RBP18.81■□□□□ 0.6
CXCL12-201ENST00000343575 ITGB4P16144 1822 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 ONECUT3O60422 494 aaPredicted RBP18.8■□□□□ 0.6
CXCL12-201ENST00000343575 TRIM27P14373 513 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 ZNF496Q96IT1 587 aaPredicted RBP18.8■□□□□ 0.6
CXCL12-201ENST00000343575 CRBNQ96SW2 442 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 TRPC5Q9UL62 973 aaPredicted RBP18.8■□□□□ 0.6
CXCL12-201ENST00000343575 PDE3AQ14432 1141 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 PANK1Q8TE04 598 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 PIGBQ92521 554 aa18.8■□□□□ 0.6
CXCL12-201ENST00000343575 PAPPAQ13219 1627 aa18.79■□□□□ 0.6
CXCL12-201ENST00000343575 HOXB7P09629 217 aa18.79■□□□□ 0.6
CXCL12-201ENST00000343575 ZKSCAN2Q63HK3 967 aa18.79■□□□□ 0.6
CXCL12-201ENST00000343575 KIF16BQ96L93 1317 aa18.79■□□□□ 0.6
CXCL12-201ENST00000343575 ATF7IPQ6VMQ6 1270 aa18.78■□□□□ 0.6
CXCL12-201ENST00000343575 NECTIN2Q92692 538 aa18.78■□□□□ 0.6
CXCL12-201ENST00000343575 QTRT2Q9H974 415 aaKnown RBP18.78■□□□□ 0.6
CXCL12-201ENST00000343575 CLUAP1Q96AJ1 413 aa18.77■□□□□ 0.6
CXCL12-201ENST00000343575 UBR2Q8IWV8 1755 aa18.77■□□□□ 0.6
CXCL12-201ENST00000343575 BCL9O00512 1426 aa18.77■□□□□ 0.6
CXCL12-201ENST00000343575 SLC4A2P04920 1241 aa18.77■□□□□ 0.6
CXCL12-201ENST00000343575 KCPQ6ZWJ8 1503 aa18.77■□□□□ 0.59
CXCL12-201ENST00000343575 DOT1LQ8TEK3 1739 aa18.76■□□□□ 0.59
CXCL12-201ENST00000343575 CANXP27824 592 aaKnown RBP18.76■□□□□ 0.59
CXCL12-201ENST00000343575 HDGFL1Q5TGJ6 251 aa18.76■□□□□ 0.59
CXCL12-201ENST00000343575 G2E3Q7L622 706 aa18.76■□□□□ 0.59
CXCL12-201ENST00000343575 TMOD3Q9NYL9 352 aa18.76■□□□□ 0.59
CXCL12-201ENST00000343575 C5P01031 1676 aa18.76■□□□□ 0.59
CXCL12-201ENST00000343575 CCDC30Q5VVM6 783 aa18.75■□□□□ 0.59
CXCL12-201ENST00000343575 ARHGAP45Q92619 1136 aa18.75■□□□□ 0.59
CXCL12-201ENST00000343575 KAT6BQ8WYB5 2073 aa18.75■□□□□ 0.59
CXCL12-201ENST00000343575 EIF2S2P20042 333 aaKnown RBP18.75■□□□□ 0.59
CXCL12-201ENST00000343575 PRIM1P49642 420 aaKnown RBP18.75■□□□□ 0.59
CXCL12-201ENST00000343575 ASAP1Q9ULH1 1129 aa18.75■□□□□ 0.59
CXCL12-201ENST00000343575 RGS12O14924 1447 aa18.75■□□□□ 0.59
CXCL12-201ENST00000343575 TTC5Q8N0Z6 440 aa18.74■□□□□ 0.59
CXCL12-201ENST00000343575 COG6Q9Y2V7 657 aa18.74■□□□□ 0.59
CXCL12-201ENST00000343575 IPO8O15397 1037 aaKnown RBP18.73■□□□□ 0.59
CXCL12-201ENST00000343575 DZIP1LQ8IYY4 767 aaKnown RBP18.73■□□□□ 0.59
CXCL12-201ENST00000343575 ATG3Q9NT62 314 aa18.73■□□□□ 0.59
CXCL12-201ENST00000343575 USP16Q9Y5T5 823 aa18.73■□□□□ 0.59
CXCL12-201ENST00000343575 FMNL2Q96PY5 1086 aa18.73■□□□□ 0.59
CXCL12-201ENST00000343575 CACNA1FO60840 1977 aa18.72■□□□□ 0.59
CXCL12-201ENST00000343575 ACSBG1Q96GR2 724 aa18.72■□□□□ 0.59
CXCL12-201ENST00000343575 CHPF2Q9P2E5 772 aa18.72■□□□□ 0.59
CXCL12-201ENST00000343575 A0A0G2JS52 829 aa18.71■□□□□ 0.59
CXCL12-201ENST00000343575 SNRPA1P09661 255 aaKnown RBP18.71■□□□□ 0.59
CXCL12-201ENST00000343575 PDIA6Q15084 440 aa18.71■□□□□ 0.59
CXCL12-201ENST00000343575 SEPT12Q8IYM1 358 aa18.71■□□□□ 0.59
CXCL12-201ENST00000343575 KCNQ2O43526 872 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms