RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 SLC26A8Q96RN1 970 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 FAM53CQ9NYF3 392 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 SPATA31D1Q6ZQQ2 1576 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 NOL10Q9BSC4 688 aaKnown RBP14.28□□□□□ -0.12
SHMT2-201ENST00000328923 TNNQ9UQP3 1299 aa14.28□□□□□ -0.12
SHMT2-201ENST00000328923 PHF14O94880 888 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 ADCY5O95622 1261 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 CASQ1P31415 396 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 KMT5BQ4FZB7 885 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 DZIP1LQ8IYY4 767 aaKnown RBP14.27□□□□□ -0.13
SHMT2-201ENST00000328923 LCMT1Q9UIC8 334 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 TMEM131LA2VDJ0 1609 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 KIF16BQ96L93 1317 aa14.27□□□□□ -0.13
SHMT2-201ENST00000328923 IRF6O14896 467 aa14.26□□□□□ -0.13
SHMT2-201ENST00000328923 CYP2E1P05181 493 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-201ENST00000328923 TCP11L2Q8N4U5 519 aa14.26□□□□□ -0.13
SHMT2-201ENST00000328923 DRC1Q96MC2 740 aa14.26□□□□□ -0.13
SHMT2-201ENST00000328923 CARD14Q9BXL6 1004 aa14.26□□□□□ -0.13
SHMT2-201ENST00000328923 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-201ENST00000328923 MYO1CO00159 1063 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 REC8O95072 547 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 CEBPAP49715 358 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-201ENST00000328923 DNAJC21Q5F1R6 531 aaKnown RBP14.25□□□□□ -0.13
SHMT2-201ENST00000328923 NUTM2DQ5VT03 806 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-201ENST00000328923 CREBRFQ8IUR6 639 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 NEK11Q8NG66 645 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 KCNF1Q9H3M0 494 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 BRMS1Q9HCU9 246 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 STK26Q9P289 416 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 DDX19BQ9UMR2 479 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 TNNT1P13805 278 aa14.25□□□□□ -0.13
SHMT2-201ENST00000328923 RBM6P78332 1123 aaKnown RBP14.25□□□□□ -0.13
SHMT2-201ENST00000328923 FBXO31Q5XUX0 539 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-201ENST00000328923 NUCB2P80303 420 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 SATB1Q01826 763 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 SART3Q15020 963 aaKnown RBP14.24□□□□□ -0.13
SHMT2-201ENST00000328923 ZFYVE9O95405 1425 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 TSGA10IPQ3SY00 556 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 TMEM132EQ6IEE7 984 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 TRAK1Q9UPV9 953 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 QRICH2Q9H0J4 1663 aa14.24□□□□□ -0.13
SHMT2-201ENST00000328923 SETD1BQ9UPS6 1966 aaKnown RBP14.24□□□□□ -0.13
SHMT2-201ENST00000328923 ZNF397Q8NF99 534 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-201ENST00000328923 C3P01024 1663 aa14.22□□□□□ -0.13
SHMT2-201ENST00000328923 KIF1BPQ96EK5 621 aa14.22□□□□□ -0.13
SHMT2-201ENST00000328923 JRKLQ9Y4A0 524 aa14.22□□□□□ -0.13
SHMT2-201ENST00000328923 SMTNL1A8MU46 457 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 GOLGA6L6A8MZA4 724 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 BMP2KLQ5H9B9 411 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 KRBA2Q6ZNG9 492 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 BCL2L13Q9BXK5 485 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 NUCB1Q02818 461 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 MUM1L1Q5H9M0 696 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 RNF217Q8TC41 542 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 ATG3Q9NT62 314 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 DONSONQ9NYP3 566 aa14.21□□□□□ -0.13
SHMT2-201ENST00000328923 ARHGEF28Q8N1W1 1705 aaKnown RBP14.2□□□□□ -0.14
SHMT2-201ENST00000328923 CEP120Q8N960 986 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 GTF3C6Q969F1 213 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 STRCQ7RTU9 1775 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 FBXO38Q6PIJ6 1188 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 C16orf45Q96MC5 204 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-201ENST00000328923 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.2□□□□□ -0.14
SHMT2-201ENST00000328923 V9GYY5 206 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-201ENST00000328923 ABCC11Q96J66 1382 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 NSD3Q9BZ95 1437 aa14.2□□□□□ -0.14
SHMT2-201ENST00000328923 HSP90AB3PQ58FF7 597 aa14.19□□□□□ -0.14
SHMT2-201ENST00000328923 GOLIM4O00461 696 aa14.19□□□□□ -0.14
SHMT2-201ENST00000328923 ESF1Q9H501 851 aaKnown RBP14.19□□□□□ -0.14
SHMT2-201ENST00000328923 ZDHHC9Q9Y397 364 aa14.19□□□□□ -0.14
SHMT2-201ENST00000328923 RRP7AQ9Y3A4 280 aaKnown RBP14.19□□□□□ -0.14
SHMT2-201ENST00000328923 TRIM27P14373 513 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 NEUROD2Q15784 382 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 FOXD4L5Q5VV16 416 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-201ENST00000328923 ATF7IPQ6VMQ6 1270 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 MORC1Q86VD1 984 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 FOXD4L4Q8WXT5 416 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-201ENST00000328923 RTF1Q92541 710 aaKnown RBP14.18□□□□□ -0.14
SHMT2-201ENST00000328923 CFAP53Q96M91 514 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 CXorf56Q9H5V9 222 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 PLCB2Q00722 1185 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 UVSSAQ2YD98 709 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 CCDC191Q8NCU4 936 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 CCDC112Q8NEF3 446 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 CERKQ8TCT0 537 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 FAM212AQ96EL1 285 aa14.18□□□□□ -0.14
SHMT2-201ENST00000328923 MBD3O95983 291 aa14.17□□□□□ -0.14
SHMT2-201ENST00000328923 ZBTB40Q9NUA8 1239 aa14.17□□□□□ -0.14
SHMT2-201ENST00000328923 SUFUQ9UMX1 484 aa14.17□□□□□ -0.14
SHMT2-201ENST00000328923 E2F4Q16254 413 aa14.17□□□□□ -0.14
SHMT2-201ENST00000328923 SPC24Q8NBT2 197 aa14.17□□□□□ -0.14
SHMT2-201ENST00000328923 NSD2O96028 1365 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 MCCP23508 829 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 SEMA3FQ13275 785 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 NBPF20Q3BBV1 942 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 SGSM3Q96HU1 749 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 MED14O60244 1454 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 IL16Q14005 1332 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 BMS1Q14692 1282 aaKnown RBP14.16□□□□□ -0.14
SHMT2-201ENST00000328923 PACS2Q86VP3 889 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms