RNA–Protein interactions for RNA: ENST00000322344.7

PNKP-201, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PNKP, Length 2,041 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-201ENST00000322344 ATP8B2P98198 1209 aa27.57■■■□□ 2
PNKP-201ENST00000322344 ESCO1Q5FWF5 840 aa27.57■■■□□ 2
PNKP-201ENST00000322344 L1TD1Q5T7N2 865 aaKnown RBP27.57■■■□□ 2
PNKP-201ENST00000322344 HSP90AA1P07900 732 aaKnown RBP27.57■■■□□ 2
PNKP-201ENST00000322344 HOXB7P09629 217 aa27.57■■■□□ 2
PNKP-201ENST00000322344 USHBP1Q8N6Y0 703 aa27.57■■■□□ 2
PNKP-201ENST00000322344 REC8O95072 547 aa27.55■■■□□ 2
PNKP-201ENST00000322344 PDE1AP54750 535 aa27.55■■■□□ 2
PNKP-201ENST00000322344 HDGFL1Q5TGJ6 251 aa27.55■■■□□ 2
PNKP-201ENST00000322344 IL27Q8NEV9 243 aa27.55■■■□□ 2
PNKP-201ENST00000322344 CD2BP2O95400 341 aaKnown RBP27.55■■■□□ 2
PNKP-201ENST00000322344 NBPF6Q5VWK0 638 aa27.55■■■□□ 2
PNKP-201ENST00000322344 NBPF4Q96M43 638 aa27.55■■■□□ 2
PNKP-201ENST00000322344 RAB3GAP1Q15042 981 aa27.54■■■□□ 2
PNKP-201ENST00000322344 RBM42Q9BTD8 480 aaKnown RBP27.54■■■□□ 2
PNKP-201ENST00000322344 LRRCC1Q9C099 1032 aa27.54■■■□□ 2
PNKP-201ENST00000322344 BRPF3Q9ULD4 1205 aa27.54■■■□□ 2
PNKP-201ENST00000322344 NECTIN2Q92692 538 aa27.53■■■□□ 2
PNKP-201ENST00000322344 GBP4Q96PP9 640 aa27.53■■■□□ 2
PNKP-201ENST00000322344 NPHP4O75161 1426 aaPredicted RBP27.53■■■□□ 2
PNKP-201ENST00000322344 TRAK2O60296 914 aa27.52■■■□□ 2
PNKP-201ENST00000322344 PTMSP20962 102 aa27.52■■■□□ 2
PNKP-201ENST00000322344 SALL3Q9BXA9 1300 aa27.51■■□□□ 1.99
PNKP-201ENST00000322344 IBTKQ9P2D0 1353 aaPredicted RBP27.51■■□□□ 1.99
PNKP-201ENST00000322344 ADAMTSL3P82987 1691 aa27.51■■□□□ 1.99
PNKP-201ENST00000322344 ERC2O15083 957 aa27.51■■□□□ 1.99
PNKP-201ENST00000322344 TNPO1Q92973 898 aaKnown RBP27.51■■□□□ 1.99
PNKP-201ENST00000322344 AKAP4Q5JQC9 854 aa27.5■■□□□ 1.99
PNKP-201ENST00000322344 EXOC6BQ9Y2D4 811 aa27.5■■□□□ 1.99
PNKP-201ENST00000322344 EIF4A1P60842 406 aaKnown RBP27.5■■□□□ 1.99
PNKP-201ENST00000322344 PLEKHO1Q53GL0 409 aaPredicted RBP27.5■■□□□ 1.99
PNKP-201ENST00000322344 LMO7Q8WWI1 1683 aa27.5■■□□□ 1.99
PNKP-201ENST00000322344 SLIT3O75094 1523 aa27.49■■□□□ 1.99
PNKP-201ENST00000322344 AMOTQ4VCS5 1084 aa27.49■■□□□ 1.99
PNKP-201ENST00000322344 KDM3BQ7LBC6 1761 aa27.49■■□□□ 1.99
PNKP-201ENST00000322344 NCAPD2Q15021 1401 aa27.49■■□□□ 1.99
PNKP-201ENST00000322344 UBTFL1P0CB47 393 aaPredicted RBP27.48■■□□□ 1.99
PNKP-201ENST00000322344 RBM33Q96EV2 1170 aaKnown RBP27.48■■□□□ 1.99
PNKP-201ENST00000322344 SRCIN1Q9C0H9 1055 aa27.48■■□□□ 1.99
PNKP-201ENST00000322344 USP44Q9H0E7 712 aa27.48■■□□□ 1.99
PNKP-201ENST00000322344 LRRFIP2Q9Y608 721 aaKnown RBP27.48■■□□□ 1.99
PNKP-201ENST00000322344 PNMA6EA0A0J9YXQ4 647 aa27.48■■□□□ 1.99
PNKP-201ENST00000322344 SETD1BQ9UPS6 1966 aaKnown RBP27.47■■□□□ 1.99
PNKP-201ENST00000322344 OVOS2A0A0G2JMS6 1433 aa27.46■■□□□ 1.99
PNKP-201ENST00000322344 MX1P20591 662 aa27.46■■□□□ 1.99
PNKP-201ENST00000322344 AOX1Q06278 1338 aa27.45■■□□□ 1.99
PNKP-201ENST00000322344 TEFQ10587 303 aa27.45■■□□□ 1.99
PNKP-201ENST00000322344 ZNF530Q6P9A1 599 aaPredicted RBP27.45■■□□□ 1.99
PNKP-201ENST00000322344 ARHGEF25Q86VW2 580 aa27.45■■□□□ 1.99
PNKP-201ENST00000322344 LGR6Q9HBX8 967 aa27.45■■□□□ 1.99
PNKP-201ENST00000322344 STAP2Q9UGK3 403 aa27.45■■□□□ 1.99
PNKP-201ENST00000322344 GCP02774 474 aa27.45■■□□□ 1.98
PNKP-201ENST00000322344 ST18O60284 1047 aa27.44■■□□□ 1.98
PNKP-201ENST00000322344 SSH3Q8TE77 659 aa27.44■■□□□ 1.98
PNKP-201ENST00000322344 PHAXQ9H814 394 aaKnown RBP27.44■■□□□ 1.98
PNKP-201ENST00000322344 ZBTB7CA1YPR0 619 aa27.43■■□□□ 1.98
PNKP-201ENST00000322344 FSD2A1L4K1 749 aa27.43■■□□□ 1.98
PNKP-201ENST00000322344 GOLGA6L3A6NEY3 463 aa27.43■■□□□ 1.98
PNKP-201ENST00000322344 RAB11FIP3O75154 756 aa27.43■■□□□ 1.98
PNKP-201ENST00000322344 SKOR2Q2VWA4 1001 aaPredicted RBP27.42■■□□□ 1.98
PNKP-201ENST00000322344 CLEC17AQ6ZS10 378 aa27.41■■□□□ 1.98
PNKP-201ENST00000322344 BTBD11A6QL63 1104 aa27.41■■□□□ 1.98
PNKP-201ENST00000322344 EIF2S2P20042 333 aaKnown RBP27.41■■□□□ 1.98
PNKP-201ENST00000322344 LRRC59Q96AG4 307 aaKnown RBP27.41■■□□□ 1.98
PNKP-201ENST00000322344 FOXD4L1Q9NU39 408 aa27.41■■□□□ 1.98
PNKP-201ENST00000322344 C1orf141Q5JVX7 400 aa27.4■■□□□ 1.98
PNKP-201ENST00000322344 ORAI2Q96SN7 254 aa27.4■■□□□ 1.98
PNKP-201ENST00000322344 TUBGCP6Q96RT7 1819 aa27.4■■□□□ 1.98
PNKP-201ENST00000322344 ISY1Q9ULR0 285 aaKnown RBP27.4■■□□□ 1.98
PNKP-201ENST00000322344 RGPD2P0DJD1 1756 aa27.39■■□□□ 1.98
PNKP-201ENST00000322344 CAMTA1Q9Y6Y1 1673 aa27.39■■□□□ 1.98
PNKP-201ENST00000322344 POLA2Q14181 598 aa27.39■■□□□ 1.98
PNKP-201ENST00000322344 LMTK3Q96Q04 1460 aa27.39■■□□□ 1.97
PNKP-201ENST00000322344 RNMTO43148 476 aaKnown RBP27.38■■□□□ 1.97
PNKP-201ENST00000322344 DNAAF4Q8WXU2 420 aa27.38■■□□□ 1.97
PNKP-201ENST00000322344 CWC22Q9HCG8 908 aaKnown RBP27.38■■□□□ 1.97
PNKP-201ENST00000322344 CHPF2Q9P2E5 772 aa27.38■■□□□ 1.97
PNKP-201ENST00000322344 NUCB2P80303 420 aa27.38■■□□□ 1.97
PNKP-201ENST00000322344 ANKRD24Q8TF21 1146 aa27.38■■□□□ 1.97
PNKP-201ENST00000322344 ESYT1Q9BSJ8 1104 aa27.38■■□□□ 1.97
PNKP-201ENST00000322344 KIF1AQ12756 1690 aa27.37■■□□□ 1.97
PNKP-201ENST00000322344 GZF1Q9H116 711 aaPredicted RBP27.37■■□□□ 1.97
PNKP-201ENST00000322344 TRPM3Q9HCF6 1732 aaPredicted RBP27.36■■□□□ 1.97
PNKP-201ENST00000322344 BEND3Q5T5X7 828 aa27.36■■□□□ 1.97
PNKP-201ENST00000322344 MST1RQ04912 1400 aa27.36■■□□□ 1.97
PNKP-201ENST00000322344 GOLGA6L22H0YM25 854 aa27.36■■□□□ 1.97
PNKP-201ENST00000322344 MCCP23508 829 aa27.36■■□□□ 1.97
PNKP-201ENST00000322344 MPRIPQ6WCQ1 1025 aa27.35■■□□□ 1.97
PNKP-201ENST00000322344 PPP1R42Q7Z4L9 355 aa27.35■■□□□ 1.97
PNKP-201ENST00000322344 DBF4Q9UBU7 674 aaPredicted RBP27.35■■□□□ 1.97
PNKP-201ENST00000322344 KCNQ3O43525 872 aa27.34■■□□□ 1.97
PNKP-201ENST00000322344 EPB41L2O43491 1005 aaKnown RBP27.34■■□□□ 1.97
PNKP-201ENST00000322344 CHMLP26374 656 aa27.34■■□□□ 1.97
PNKP-201ENST00000322344 SSFA2P28290 1259 aa27.34■■□□□ 1.97
PNKP-201ENST00000322344 PXDNQ92626 1479 aa27.33■■□□□ 1.97
PNKP-201ENST00000322344 PI4KAP2A4QPH2 592 aa27.33■■□□□ 1.97
PNKP-201ENST00000322344 TRIM6-TRIM34B2RNG4 842 aa27.33■■□□□ 1.97
PNKP-201ENST00000322344 TSHZ3Q63HK5 1081 aa27.33■■□□□ 1.97
PNKP-201ENST00000322344 PI4KAP1Q8N8J0 262 aa27.33■■□□□ 1.97
PNKP-201ENST00000322344 ANAPC15P60006 121 aa27.33■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms