RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 PDCL2Q8N4E4 241 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 DDX11Q96FC9 970 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 GOLGA6L19H0YKK7 550 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 ABCA8O94911 1581 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 ZSCAN23Q3MJ62 389 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 EYA1Q99502 592 aa18.25■□□□□ 0.51
VARS2-201ENST00000321897 ATP5J2-PTCD1G3V325 749 aa18.24■□□□□ 0.51
VARS2-201ENST00000321897 GTF2E1P29083 439 aaPredicted RBP18.24■□□□□ 0.51
VARS2-201ENST00000321897 PA2G4Q9UQ80 394 aaKnown RBP18.24■□□□□ 0.51
VARS2-201ENST00000321897 PPP4R3BQ5MIZ7 849 aa18.24■□□□□ 0.51
VARS2-201ENST00000321897 PHF8Q9UPP1 1060 aa18.24■□□□□ 0.51
VARS2-201ENST00000321897 ERVK-7P63135 1459 aa18.24■□□□□ 0.51
VARS2-201ENST00000321897 MAP3K19Q56UN5 1328 aa18.24■□□□□ 0.51
VARS2-201ENST00000321897 CPA1P15085 419 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 FMNL2Q96PY5 1086 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 TRIM5Q9C035 493 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 ATP7AQ04656 1500 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 PLEKHM2Q8IWE5 1019 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 CHPF2Q9P2E5 772 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 NSD2O96028 1365 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 KLHL40Q2TBA0 621 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 HSP90AB4PQ58FF6 505 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 TRMT2AQ8IZ69 625 aaKnown RBP18.23■□□□□ 0.51
VARS2-201ENST00000321897 ATP6V1DQ9Y5K8 247 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 YTHDC2Q9H6S0 1430 aaKnown RBP18.23■□□□□ 0.51
VARS2-201ENST00000321897 IL13P35225 146 aa18.23■□□□□ 0.51
VARS2-201ENST00000321897 ATP2B1P20020 1258 aa18.22■□□□□ 0.51
VARS2-201ENST00000321897 OFD1O75665 1012 aa18.22■□□□□ 0.51
VARS2-201ENST00000321897 CEP85Q6P2H3 762 aa18.22■□□□□ 0.51
VARS2-201ENST00000321897 TTC12Q9H892 705 aaPredicted RBP18.22■□□□□ 0.51
VARS2-201ENST00000321897 IL16Q14005 1332 aa18.22■□□□□ 0.51
VARS2-201ENST00000321897 PDE1AP54750 535 aa18.21■□□□□ 0.51
VARS2-201ENST00000321897 CAMK4Q16566 473 aa18.21■□□□□ 0.51
VARS2-201ENST00000321897 TPD52L1Q16890 204 aaPredicted RBP18.21■□□□□ 0.51
VARS2-201ENST00000321897 CABLES1Q8TDN4 633 aa18.21■□□□□ 0.51
VARS2-201ENST00000321897 ANKRD44Q8N8A2 993 aa18.21■□□□□ 0.51
VARS2-201ENST00000321897 EIF2AK4Q9P2K8 1649 aaKnown RBP18.21■□□□□ 0.51
VARS2-201ENST00000321897 RNF20Q5VTR2 975 aa18.2■□□□□ 0.5
VARS2-201ENST00000321897 YEATS2Q9ULM3 1422 aa18.2■□□□□ 0.5
VARS2-201ENST00000321897 FKBP4Q02790 459 aaKnown RBP eCLIP18.2■□□□□ 0.5
VARS2-201ENST00000321897 RIMS2Q9UQ26 1411 aa18.2■□□□□ 0.5
VARS2-201ENST00000321897 KDM5DQ9BY66 1539 aa18.2■□□□□ 0.5
VARS2-201ENST00000321897 CPLX1O14810 134 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 ANKLE2Q86XL3 938 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 DNAAF4Q8WXU2 420 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 ADGBQ8N7X0 1667 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 CWF19L2Q2TBE0 894 aaKnown RBP18.19■□□□□ 0.5
VARS2-201ENST00000321897 TOM1L2Q6ZVM7 507 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 MYD88Q99836 296 aa18.19■□□□□ 0.5
VARS2-201ENST00000321897 KCNA6P17658 529 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 MTMR7Q9Y216 660 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 MAP3K2Q9Y2U5 619 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 LARP1BQ659C4 914 aaKnown RBP18.18■□□□□ 0.5
VARS2-201ENST00000321897 C17orf53Q8N3J3 647 aaPredicted RBP18.18■□□□□ 0.5
VARS2-201ENST00000321897 HOMER1Q86YM7 354 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 NECAB1Q8N987 351 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 CYP46A1Q9Y6A2 500 aa18.18■□□□□ 0.5
VARS2-201ENST00000321897 TFIP11Q9UBB9 837 aaKnown RBP18.18■□□□□ 0.5
VARS2-201ENST00000321897 ERBB4Q15303 1308 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 CD2BP2O95400 341 aaKnown RBP18.17■□□□□ 0.5
VARS2-201ENST00000321897 TATP17735 454 aaPredicted RBP18.17■□□□□ 0.5
VARS2-201ENST00000321897 GUCY1B3Q02153 619 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 RAB11FIP4Q86YS3 637 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 TMX3Q96JJ7 454 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 RBSNQ9H1K0 784 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.17■□□□□ 0.5
VARS2-201ENST00000321897 NPC1L1Q9UHC9 1359 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 CABP4P57796 275 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 BBXQ8WY36 941 aaPredicted RBP18.17■□□□□ 0.5
VARS2-201ENST00000321897 KIF1BPQ96EK5 621 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 DCTPP1Q9H773 170 aa18.17■□□□□ 0.5
VARS2-201ENST00000321897 LRRC2Q9BYS8 371 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 PNMA6EA0A0J9YXQ4 647 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 PLEKHF1Q96S99 279 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 CWC22Q9HCG8 908 aaKnown RBP18.16■□□□□ 0.5
VARS2-201ENST00000321897 PDRG1Q9NUG6 133 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 ZKSCAN5Q9Y2L8 839 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 PKP1Q13835 747 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 MSH6P52701 1360 aa18.16■□□□□ 0.5
VARS2-201ENST00000321897 DYNC1I1O14576 645 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 RAB3GAP1Q15042 981 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 HCLS1P14317 486 aaPredicted RBP18.15■□□□□ 0.5
VARS2-201ENST00000321897 KLHDC4Q8TBB5 520 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 CDC42BPAQ5VT25 1732 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 ABCC1P33527 1531 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 PRDM11Q9NQV5 511 aa18.15■□□□□ 0.5
VARS2-201ENST00000321897 HTATSF1O43719 755 aaKnown RBP18.14■□□□□ 0.5
VARS2-201ENST00000321897 ARHGAP45Q92619 1136 aa18.14■□□□□ 0.5
VARS2-201ENST00000321897 LGR6Q9HBX8 967 aa18.14■□□□□ 0.5
VARS2-201ENST00000321897 SNRKQ9NRH2 765 aa18.14■□□□□ 0.5
VARS2-201ENST00000321897 C16orf45Q96MC5 204 aaPredicted RBP18.14■□□□□ 0.49
VARS2-201ENST00000321897 ZBTB3Q9H5J0 574 aa18.14■□□□□ 0.49
VARS2-201ENST00000321897 INSRP06213 1382 aa18.14■□□□□ 0.49
VARS2-201ENST00000321897 BLOC1S2Q6QNY1 142 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 RHPN1Q8TCX5 695 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 RAB11FIP3O75154 756 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 NDUFB9Q9Y6M9 179 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 LTKP29376 864 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 UBE3BQ7Z3V4 1068 aa18.13■□□□□ 0.49
VARS2-201ENST00000321897 GSPT1P15170 499 aaKnown RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms