RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 LARP1Q6PKG0 1096 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 ERC1Q8IUD2 1116 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 TMOD3Q9NYL9 352 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 NRXN3Q9Y4C0 1643 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 THUMPD2Q9BTF0 503 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 ERBB3P21860 1342 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 GOLGA6L22H0YM25 854 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 SNRPA1P09661 255 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 FBXW7Q969H0 707 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 RBM42Q9BTD8 480 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 KIF1AQ12756 1690 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 NBPF14Q5TI25 921 aa10.54□□□□□ -0.72
PDLIM5-201ENST00000317968 KDRP35968 1356 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 RNMTO43148 476 aaKnown RBP10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 USHBP1Q8N6Y0 703 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 CARD10Q9BWT7 1032 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 ERBB4Q15303 1308 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 XRN1Q8IZH2 1706 aaKnown RBP10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 DCTN1Q14203 1278 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 CHRNA2Q15822 529 aa10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 SMARCC1Q92922 1105 aaPredicted RBP10.53□□□□□ -0.72
PDLIM5-201ENST00000317968 LRRC7Q96NW7 1537 aa10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 ADAMTS2O95450 1211 aa10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 HSP90AB3PQ58FF7 597 aa10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 NBPF6Q5VWK0 638 aa10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 MRPL50Q8N5N7 158 aaKnown RBP10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 NBPF4Q96M43 638 aa10.52□□□□□ -0.72
PDLIM5-201ENST00000317968 WDR17Q8IZU2 1322 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 KDM4FA0A1W2PPD8 638 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 TRIM27P14373 513 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 SSH2Q76I76 1423 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 ZNF853P0CG23 659 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 MST1RQ04912 1400 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 ALDH1L1O75891 902 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 MPRIPQ6WCQ1 1025 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 DDX54Q8TDD1 881 aaKnown RBP10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 CHMP4CQ96CF2 233 aa10.52□□□□□ -0.73
PDLIM5-201ENST00000317968 TULP1O00294 542 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 WDHD1O75717 1129 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 FLIIQ13045 1269 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 KIF20BQ96Q89 1820 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 ERVV-2B6SEH9 535 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 HDAC1Q13547 482 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 GNL2Q13823 731 aaKnown RBP10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 TMEM57Q8N5G2 664 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 CPDO75976 1380 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 ANKRD45Q5TZF3 282 aa10.51□□□□□ -0.73
PDLIM5-201ENST00000317968 SOS2Q07890 1332 aaPredicted RBP10.5□□□□□ -0.73
PDLIM5-201ENST00000317968 FAM83GA6ND36 823 aa10.5□□□□□ -0.73
PDLIM5-201ENST00000317968 G3BP1Q13283 466 aaKnown RBP eCLIP10.5□□□□□ -0.738e-6■□□□□ 9
PDLIM5-201ENST00000317968 DNAAF4Q8WXU2 420 aa10.5□□□□□ -0.73
PDLIM5-201ENST00000317968 IL27Q8NEV9 243 aa10.5□□□□□ -0.73
PDLIM5-201ENST00000317968 ERC2O15083 957 aa10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 NWD1Q149M9 1564 aa10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 ZNF652Q9Y2D9 606 aa10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 RAB11FIP3O75154 756 aa10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 CLSTN1O94985 981 aa10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 THRAP3Q9Y2W1 955 aaKnown RBP10.49□□□□□ -0.73
PDLIM5-201ENST00000317968 PDE4AP27815 886 aa10.48□□□□□ -0.73
PDLIM5-201ENST00000317968 CABLES1Q8TDN4 633 aa10.48□□□□□ -0.73
PDLIM5-201ENST00000317968 C8orf58Q8NAV2 365 aa10.48□□□□□ -0.73
PDLIM5-201ENST00000317968 ANKRD26Q9UPS8 1709 aa10.48□□□□□ -0.73
PDLIM5-201ENST00000317968 COL3A1P02461 1466 aaPredicted RBP10.48□□□□□ -0.73
PDLIM5-201ENST00000317968 RUFY2Q8WXA3 655 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 DDB1Q16531 1140 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 INTS3Q68E01 1043 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 DDX21Q9NR30 783 aaKnown RBP eCLIP10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 A0A087WZG4 1122 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 REC8O95072 547 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 SLC52A2Q9HAB3 445 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 FMN2Q9NZ56 1722 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 CLASRPQ8N2M8 674 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 SPINK5Q9NQ38 1064 aaPredicted RBP10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 ANP32EQ9BTT0 268 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 BTG4Q9NY30 223 aa10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 RBM19Q9Y4C8 960 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-201ENST00000317968 NECTIN2Q92692 538 aa10.46□□□□□ -0.73
PDLIM5-201ENST00000317968 IQSEC2Q5JU85 1478 aa10.46□□□□□ -0.73
PDLIM5-201ENST00000317968 PHKG2P15735 406 aa10.46□□□□□ -0.73
PDLIM5-201ENST00000317968 KSR2Q6VAB6 950 aa10.46□□□□□ -0.73
PDLIM5-201ENST00000317968 OVOS2A0A0G2JMS6 1433 aa10.46□□□□□ -0.74
PDLIM5-201ENST00000317968 MON2Q7Z3U7 1717 aa10.46□□□□□ -0.74
PDLIM5-201ENST00000317968 POLD1P28340 1107 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 LINS1Q8NG48 757 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 PDZRN3Q9UPQ7 1066 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 ZNF790Q6PG37 636 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 CCAR1Q8IX12 1150 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 IFIT2P09913 472 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 CCDC34Q96HJ3 373 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 ZPR1O75312 459 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 TSHZ2Q9NRE2 1034 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 CHD2O14647 1828 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 AIMP1Q12904 312 aaKnown RBP10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 TCEAL9Q9UHQ7 104 aa10.45□□□□□ -0.74
PDLIM5-201ENST00000317968 HIP1O00291 1037 aa10.44□□□□□ -0.74
PDLIM5-201ENST00000317968 IL17REQ8NFR9 667 aa10.44□□□□□ -0.74
PDLIM5-201ENST00000317968 BCL11BQ9C0K0 894 aaPredicted RBP10.44□□□□□ -0.74
PDLIM5-201ENST00000317968 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.44□□□□□ -0.74
PDLIM5-201ENST00000317968 SETD1AO15047 1707 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms