RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.97■■□□□ 1.43
TPM1-203ENST00000317516 PHF14O94880 888 aa23.97■■□□□ 1.43
TPM1-203ENST00000317516 ITPK1Q13572 414 aa23.97■■□□□ 1.43
TPM1-203ENST00000317516 AKAP4Q5JQC9 854 aa23.97■■□□□ 1.43
TPM1-203ENST00000317516 MSL1Q68DK7 614 aa23.97■■□□□ 1.43
TPM1-203ENST00000317516 ITGB4P16144 1822 aa23.96■■□□□ 1.43
TPM1-203ENST00000317516 HMOX1P09601 288 aa23.96■■□□□ 1.43
TPM1-203ENST00000317516 GNPATO15228 680 aa23.95■■□□□ 1.42
TPM1-203ENST00000317516 GPR162Q16538 588 aa23.95■■□□□ 1.42
TPM1-203ENST00000317516 NFATC2IPQ8NCF5 419 aa23.95■■□□□ 1.42
TPM1-203ENST00000317516 C5P01031 1676 aa23.94■■□□□ 1.42
TPM1-203ENST00000317516 KDM6AO15550 1401 aaPredicted RBP23.93■■□□□ 1.42
TPM1-203ENST00000317516 RC3H1Q5TC82 1133 aaKnown RBP23.92■■□□□ 1.42
TPM1-203ENST00000317516 RTCBQ9Y3I0 505 aaKnown RBP23.92■■□□□ 1.42
TPM1-203ENST00000317516 C4BP0C0L5 1744 aa23.91■■□□□ 1.42
TPM1-203ENST00000317516 TRAPPC3LQ5T215 181 aa23.91■■□□□ 1.42
TPM1-203ENST00000317516 AMIGO3Q86WK7 504 aa23.91■■□□□ 1.42
TPM1-203ENST00000317516 U2SURPO15042 1029 aaKnown RBP23.9■■□□□ 1.42
TPM1-203ENST00000317516 PTCD1O75127 700 aaKnown RBP23.9■■□□□ 1.42
TPM1-203ENST00000317516 CFAP53Q96M91 514 aa23.9■■□□□ 1.42
TPM1-203ENST00000317516 CD2APQ9Y5K6 639 aa23.9■■□□□ 1.42
TPM1-203ENST00000317516 SMIM5Q71RC9 77 aa23.89■■□□□ 1.41
TPM1-203ENST00000317516 PELP1Q8IZL8 1130 aaKnown RBP23.89■■□□□ 1.41
TPM1-203ENST00000317516 SLC4A9Q96Q91 983 aa23.89■■□□□ 1.41
TPM1-203ENST00000317516 TUBGCP6Q96RT7 1819 aa23.89■■□□□ 1.41
TPM1-203ENST00000317516 ADRA2BP18089 450 aa23.88■■□□□ 1.41
TPM1-203ENST00000317516 MTHFSDQ2M296 383 aaKnown RBP23.88■■□□□ 1.41
TPM1-203ENST00000317516 NLGN2Q8NFZ4 835 aa23.88■■□□□ 1.41
TPM1-203ENST00000317516 SLC52A2Q9HAB3 445 aa23.88■■□□□ 1.41
TPM1-203ENST00000317516 LGR6Q9HBX8 967 aa23.87■■□□□ 1.41
TPM1-203ENST00000317516 TAF1LQ8IZX4 1826 aa23.87■■□□□ 1.41
TPM1-203ENST00000317516 CNTNAP4Q9C0A0 1308 aa23.86■■□□□ 1.41
TPM1-203ENST00000317516 RNMTO43148 476 aaKnown RBP23.86■■□□□ 1.41
TPM1-203ENST00000317516 RPS6KA4O75676 772 aa23.86■■□□□ 1.41
TPM1-203ENST00000317516 COL24A1Q17RW2 1714 aa23.86■■□□□ 1.41
TPM1-203ENST00000317516 NUDCQ9Y266 331 aa23.85■■□□□ 1.41
TPM1-203ENST00000317516 GRIN3BO60391 1043 aa23.84■■□□□ 1.41
TPM1-203ENST00000317516 NLGN1Q8N2Q7 840 aa23.84■■□□□ 1.41
TPM1-203ENST00000317516 RFC4P35249 363 aa23.83■■□□□ 1.41
TPM1-203ENST00000317516 GAS2L2Q8NHY3 880 aa23.83■■□□□ 1.41
TPM1-203ENST00000317516 ARHGEF1Q92888 912 aaKnown RBP23.82■■□□□ 1.4
TPM1-203ENST00000317516 CRKLP46109 303 aaKnown RBP23.8■■□□□ 1.4
TPM1-203ENST00000317516 MMP10P09238 476 aa23.79■■□□□ 1.4
TPM1-203ENST00000317516 PPP2R1AP30153 589 aa23.79■■□□□ 1.4
TPM1-203ENST00000317516 GNAT3A8MTJ3 354 aa23.78■■□□□ 1.4
TPM1-203ENST00000317516 COL3A1P02461 1466 aaPredicted RBP23.78■■□□□ 1.4
TPM1-203ENST00000317516 UBR3Q6ZT12 1888 aa23.78■■□□□ 1.4
TPM1-203ENST00000317516 ZNF831Q5JPB2 1677 aa23.77■■□□□ 1.4
TPM1-203ENST00000317516 SLC39A6Q13433 755 aa23.77■■□□□ 1.4
TPM1-203ENST00000317516 TEFQ10587 303 aa23.76■■□□□ 1.39
TPM1-203ENST00000317516 ZNF784Q8NCA9 323 aaPredicted RBP23.76■■□□□ 1.39
TPM1-203ENST00000317516 U2AF1L5P0DN76 240 aaPredicted RBP23.75■■□□□ 1.39
TPM1-203ENST00000317516 GYS1P13807 737 aa23.75■■□□□ 1.39
TPM1-203ENST00000317516 YBX3P16989 372 aaKnown RBP eCLIP23.75■■□□□ 1.39
TPM1-203ENST00000317516 U2AF1Q01081 240 aaKnown RBP eCLIP23.75■■□□□ 1.396e-9■■■■□ 21.7
TPM1-203ENST00000317516 DNAJC10Q8IXB1 793 aa23.75■■□□□ 1.39
TPM1-203ENST00000317516 TTC5Q8N0Z6 440 aa23.75■■□□□ 1.39
TPM1-203ENST00000317516 VSIG10Q8N0Z9 540 aa23.75■■□□□ 1.39
TPM1-203ENST00000317516 PRKAR2BP31323 418 aa23.74■■□□□ 1.39
TPM1-203ENST00000317516 CCDC87Q9NVE4 849 aa23.74■■□□□ 1.39
TPM1-203ENST00000317516 INTS5Q6P9B9 1019 aaKnown RBP23.73■■□□□ 1.39
TPM1-203ENST00000317516 IL17REQ8NFR9 667 aa23.73■■□□□ 1.39
TPM1-203ENST00000317516 RSPH6AQ9H0K4 717 aa23.73■■□□□ 1.39
TPM1-203ENST00000317516 PARP3Q9Y6F1 533 aa23.73■■□□□ 1.39
TPM1-203ENST00000317516 FCHSD2O94868 740 aa23.72■■□□□ 1.39
TPM1-203ENST00000317516 MRC1P22897 1456 aa23.71■■□□□ 1.39
TPM1-203ENST00000317516 CYP19A1P11511 503 aaPredicted RBP23.71■■□□□ 1.39
TPM1-203ENST00000317516 PHACTR3Q96KR7 559 aa23.71■■□□□ 1.39
TPM1-203ENST00000317516 SCN11AQ9UI33 1791 aa23.7■■□□□ 1.39
TPM1-203ENST00000317516 ZPR1O75312 459 aa23.7■■□□□ 1.38
TPM1-203ENST00000317516 TGFB2P61812 414 aa23.7■■□□□ 1.38
TPM1-203ENST00000317516 USP42Q9H9J4 1324 aaKnown RBP23.69■■□□□ 1.38
TPM1-203ENST00000317516 STARD3NLO95772 234 aa23.69■■□□□ 1.38
TPM1-203ENST00000317516 TEX13AQ9BXU3 409 aaPredicted RBP23.69■■□□□ 1.38
TPM1-203ENST00000317516 UTRNP46939 3433 aa23.68■■□□□ 1.38
TPM1-203ENST00000317516 ZNF790Q6PG37 636 aa23.68■■□□□ 1.38
TPM1-203ENST00000317516 RTF1Q92541 710 aaKnown RBP23.68■■□□□ 1.38
TPM1-203ENST00000317516 NEFMP07197 916 aa23.67■■□□□ 1.38
TPM1-203ENST00000317516 SRP68Q9UHB9 627 aaKnown RBP23.67■■□□□ 1.38
TPM1-203ENST00000317516 SOS1Q07889 1333 aaPredicted RBP23.65■■□□□ 1.38
TPM1-203ENST00000317516 COL5A3P25940 1745 aaPredicted RBP23.65■■□□□ 1.38
TPM1-203ENST00000317516 FKBP8Q14318 412 aa23.65■■□□□ 1.38
TPM1-203ENST00000317516 BTBD11A6QL63 1104 aa23.64■■□□□ 1.37
TPM1-203ENST00000317516 ZNF496Q96IT1 587 aaPredicted RBP23.64■■□□□ 1.37
TPM1-203ENST00000317516 FMNL2Q96PY5 1086 aa23.64■■□□□ 1.37
TPM1-203ENST00000317516 CEMIPQ8WUJ3 1361 aa23.64■■□□□ 1.37
TPM1-203ENST00000317516 HTATSF1O43719 755 aaKnown RBP23.63■■□□□ 1.37
TPM1-203ENST00000317516 USPL1Q5W0Q7 1092 aa23.63■■□□□ 1.37
TPM1-203ENST00000317516 NARFQ9UHQ1 456 aa23.63■■□□□ 1.37
TPM1-203ENST00000317516 WWC3Q9ULE0 1092 aa23.63■■□□□ 1.37
TPM1-203ENST00000317516 ZBTB1Q9Y2K1 713 aa23.63■■□□□ 1.37
TPM1-203ENST00000317516 CHD4Q14839 1912 aa23.63■■□□□ 1.37
TPM1-203ENST00000317516 CANXP27824 592 aaKnown RBP23.62■■□□□ 1.37
TPM1-203ENST00000317516 ADAMTS7Q9UKP4 1686 aa23.62■■□□□ 1.37
TPM1-203ENST00000317516 KCPQ6ZWJ8 1503 aa23.62■■□□□ 1.37
TPM1-203ENST00000317516 MYH14Q7Z406 1995 aaKnown RBP23.61■■□□□ 1.37
TPM1-203ENST00000317516 A0A087WZG4 1122 aa23.61■■□□□ 1.37
TPM1-203ENST00000317516 A0A0G2JLW4 131 aa23.61■■□□□ 1.37
TPM1-203ENST00000317516 NPM2Q86SE8 214 aaKnown RBP23.61■■□□□ 1.37
TPM1-203ENST00000317516 PNNQ9H307 717 aaKnown RBP23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms